Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.0e-192 675.6 355 100.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.0e-87 327.8 358 54.5
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 4.4e-86 322.4 362 53.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 4.4e-86 322.4 363 53.2
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 6.3e-85 318.5 373 52.8
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 6.3e-85 318.5 351 55.6
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.1e-84 315.8 358 54.7
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 2.6e-83 313.2 326 56.7
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.5e-83 312.8 358 54.2
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.5e-81 307.4 378 52.4
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 1.7e-74 283.9 326 53.1
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 5.0e-74 282.3 345 50.4
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.2e-73 279.3 356 49.7
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 9.4e-73 278.1 360 48.6
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 2.1e-72 276.9 328 53.4
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 6.1e-72 275.4 347 49.0
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 5.7e-70 268.9 346 49.4
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 9.8e-70 268.1 342 49.4
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 6.3e-69 265.4 346 47.7
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.1e-68 264.6 328 48.8
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.1e-68 264.6 335 47.5
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.1e-68 264.6 325 51.1
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 3.1e-68 263.1 342 48.8
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.1e-68 262.7 346 48.8
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 7.0e-68 261.9 317 51.4
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 2.0e-67 260.4 326 51.5
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.7e-67 260.0 339 46.3
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 3.5e-67 259.6 344 48.5
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 2.3e-66 256.9 338 49.4
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.9e-66 256.5 326 48.5
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 5.0e-66 255.8 341 49.0
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 6.6e-66 255.4 331 50.2
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 3.3e-65 253.1 323 48.6
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.3e-65 253.1 347 47.8
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 5.5e-65 252.3 317 49.5
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 7.2e-65 251.9 342 47.4
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-64 251.1 323 48.6
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 2.8e-64 250.0 347 46.4
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.8e-63 247.3 361 47.1
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.8e-63 247.3 324 48.5
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 5.2e-63 245.7 324 48.1
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 8.9e-63 245.0 352 45.5
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 1.5e-62 244.2 335 46.9
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.0e-62 243.8 317 47.6
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.6e-62 243.4 337 47.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.4e-62 242.7 323 47.4
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.4e-62 242.7 310 51.0
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 4.4e-62 242.7 344 44.8
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.3e-61 241.1 363 46.6
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.2e-61 240.4 331 45.6
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 6.3e-61 238.8 369 45.8
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.1e-60 238.0 347 45.5
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.8e-60 237.3 354 45.8
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 2.4e-60 236.9 283 54.1
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 2.4e-60 236.9 348 45.7
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.7e-59 233.4 316 47.8
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 3.5e-59 233.0 337 44.2
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.0e-58 231.5 301 51.2
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.7e-58 230.7 322 46.0
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 3.9e-58 229.6 318 47.5
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 5.0e-58 229.2 329 45.0
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 8.6e-58 228.4 333 46.5
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.5e-57 227.6 290 50.3
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.5e-57 227.6 329 48.3
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.5e-57 227.6 329 48.3
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.5e-57 226.9 330 45.2
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.6e-57 225.7 331 48.0
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 5.6e-57 225.7 332 46.1
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 7.3e-57 225.3 323 47.4
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 3.6e-56 223.0 319 46.1
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.6e-56 223.0 338 44.1
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 8.0e-56 221.9 337 45.4
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 1.0e-55 221.5 360 41.4
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.4e-55 221.1 400 41.0
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.8e-55 220.7 362 42.5
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.1e-55 219.9 365 39.7
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.2e-54 218.0 402 39.1
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.6e-54 216.9 337 43.9
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.2e-53 213.8 328 43.6
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.2e-52 209.9 321 42.7
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 4.1e-52 209.5 185 59.5
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.6e-51 207.6 342 40.9
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.7e-51 206.8 348 42.8
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 7.8e-51 205.3 326 42.0
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.0e-50 204.9 341 43.7
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.0e-50 204.9 330 43.9
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 6.6e-50 202.2 336 40.5
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 6.6e-50 202.2 368 37.0
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 8.6e-50 201.8 355 40.8
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.1e-49 201.4 337 42.1
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 3.6e-48 196.4 322 43.5
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 4.7e-48 196.1 306 43.1
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 4.7e-48 196.1 339 39.5
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 6.2e-48 195.7 330 39.7
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.1e-47 194.9 344 39.5
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.4e-47 194.5 344 39.0
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 4.0e-47 193.0 352 40.9
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 6.8e-47 192.2 344 38.7
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 6.8e-47 192.2 333 39.3
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.2e-46 191.4 343 39.9
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.5e-46 191.0 351 39.3
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.0e-46 190.7 341 38.4
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.2e-45 187.2 350 38.3
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 2.9e-45 186.8 125 72.0
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 4.9e-45 186.0 403 37.7
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 2.4e-44 183.7 234 48.3
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 4.1e-44 183.0 326 39.9
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 4.1e-44 183.0 368 39.1
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.1e-43 180.6 316 40.5
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.6e-43 179.5 339 38.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 7.8e-43 178.7 326 38.7
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.3e-42 177.9 327 37.6
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.3e-42 177.9 140 62.1
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.3e-42 177.2 140 62.1
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 3.0e-42 176.8 321 40.2
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.6e-41 172.6 146 61.0
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 9.5e-41 171.8 347 37.5
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.4e-39 167.9 167 55.1
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 3.1e-39 166.8 322 37.0
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.7e-37 159.8 332 39.2
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 6.0e-35 152.5 295 38.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 6.6e-34 149.1 170 47.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.5e-33 147.1 323 35.0
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.6e-32 144.4 289 36.3
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 4.7e-32 142.9 304 35.9
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 6.2e-32 142.5 366 33.3
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 6.8e-31 139.0 332 33.7
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 2.2e-29 134.0 124 53.2
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 3.5e-27 126.7 333 32.4
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.1e-25 121.7 70 75.7
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 4.3e-25 119.8 346 31.8
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 5.6e-25 119.4 355 29.6
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 4.8e-24 116.3 355 29.3
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 6.2e-24 115.9 347 31.7
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 6.2e-24 115.9 103 49.5
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 6.2e-24 115.9 93 59.1
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.4e-23 114.8 347 31.4
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.4e-23 114.0 377 29.4
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.1e-23 113.6 197 38.6
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 6.9e-23 112.5 352 29.8
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.0e-22 110.9 129 45.0
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.8e-22 109.4 158 38.6
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.7e-21 107.8 124 44.4
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 8.4e-21 105.5 138 41.3
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 4.6e-19 99.8 376 26.3
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 6.0e-19 99.4 362 29.0
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 6.0e-19 99.4 362 29.0
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 8.7e-18 95.5 352 27.0
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 8.7e-18 95.5 352 27.0
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 4.3e-17 93.2 200 33.5
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.1e-15 88.6 65 60.0
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.2e-14 85.1 379 25.6
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.9e-13 80.5 283 31.8
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 5.5e-12 76.3 263 30.4
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.7e-11 73.9 71 46.5
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.5e-11 73.6 56 55.4
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.3e-10 70.9 253 31.2
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.1e-09 68.6 287 30.3
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.1e-09 68.6 74 40.5
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.9e-09 67.8 41 70.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.4e-07 61.6 206 34.0
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 1.8e-07 61.2 198 32.3


User provided reference genes

Program Settings