Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 2.2e-76 288.9 147 100.0
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 5.2e-41 171.4 159 59.7
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 6.7e-41 171.0 159 57.9
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.5e-40 169.9 150 62.7
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.2e-37 160.2 163 56.4
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 3.5e-37 158.7 149 57.0
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 3.8e-36 155.2 144 58.3
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 8.5e-36 154.1 162 58.0
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 2.3e-33 146.0 156 53.8
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 2.3e-33 146.0 156 53.8
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.0e-33 145.6 153 56.9
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.0e-33 145.6 153 56.9
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 4.0e-33 145.2 155 54.8
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.0e-33 145.2 153 56.9
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 4.0e-33 145.2 155 56.8
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 1.2e-32 143.7 153 55.6
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.2e-32 143.7 170 52.4
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.5e-32 143.3 161 53.4
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 1.5e-32 143.3 150 54.7
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 2.0e-32 142.9 158 52.5
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 5.7e-32 141.4 143 53.8
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 3.7e-31 138.7 163 55.8
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 3.7e-31 138.7 154 55.2
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 3.7e-31 138.7 168 51.2
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 4.8e-31 138.3 155 56.1
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 8.2e-31 137.5 130 56.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 4.1e-30 135.2 161 49.1
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 9.1e-30 134.0 148 52.7
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.1e-30 134.0 153 52.9
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 9.1e-30 134.0 153 52.9
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.2e-29 133.7 143 57.3
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-29 133.7 153 52.9
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.7e-29 132.5 144 57.6
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 2.7e-29 132.5 173 48.6
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.7e-29 132.5 139 56.8
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 2.7e-29 132.5 155 51.6
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.5e-29 132.1 153 54.2
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 3.5e-29 132.1 156 53.8
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 4.5e-29 131.7 166 50.0
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 4.5e-29 131.7 153 52.3
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.7e-29 131.0 171 50.3
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.0e-28 130.6 180 50.0
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.3e-28 130.2 169 48.5
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.3e-28 130.2 160 48.8
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.2e-28 129.4 153 52.9
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.2e-28 129.4 142 54.2
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 2.9e-28 129.0 159 49.7
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.9e-28 129.0 149 52.3
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 5.0e-28 128.3 155 51.0
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 6.5e-28 127.9 160 52.5
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 8.5e-28 127.5 173 45.7
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.5e-27 126.7 165 49.7
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.5e-27 126.7 181 44.8
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 3.2e-27 125.6 150 50.7
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.2e-27 125.2 156 51.3
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 4.2e-27 125.2 163 50.3
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 5.5e-27 124.8 150 49.3
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 5.5e-27 124.8 150 49.3
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 5.5e-27 124.8 163 49.7
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 7.2e-27 124.4 162 51.9
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.6e-26 123.2 178 48.3
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.7e-26 122.5 147 49.7
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.7e-26 122.5 147 49.7
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 4.7e-26 121.7 177 45.2
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 6.1e-26 121.3 169 43.2
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.4e-25 120.2 147 49.0
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 2.3e-25 119.4 148 50.7
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.5e-24 116.7 151 50.3
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 1.5e-24 116.7 145 53.8
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.5e-24 116.7 149 50.3
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.0e-24 116.3 168 46.4
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.0e-24 116.3 168 46.4
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 2.6e-24 115.9 139 48.2
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 7.5e-24 114.4 167 47.3
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 9.8e-24 114.0 168 47.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.7e-23 113.2 170 46.5
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 2.2e-23 112.8 180 43.9
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 2.8e-23 112.5 171 44.4
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 3.7e-23 112.1 175 41.7
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 8.3e-23 110.9 169 43.8
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 8.3e-23 110.9 169 43.8
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 8.3e-23 110.9 169 43.8
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 8.3e-23 110.9 191 39.3
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.4e-22 110.2 178 42.7
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 1.8e-22 109.8 169 43.8
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.8e-22 109.8 158 47.5
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 2.4e-22 109.4 171 43.3
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 3.1e-22 109.0 170 43.5
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.1e-22 108.6 169 43.2
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 5.4e-22 108.2 171 43.9
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 5.4e-22 108.2 145 47.6
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 5.4e-22 108.2 184 42.9
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 5.4e-22 108.2 183 40.4
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 7.0e-22 107.8 163 44.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.6e-21 106.7 171 42.7
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.6e-21 106.7 166 42.2
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.5e-21 105.1 154 46.1
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.3e-20 103.6 129 52.7
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.3e-20 103.6 142 47.9
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.9e-20 102.4 173 40.5
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 2.9e-20 102.4 179 41.3
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 2.9e-20 102.4 153 45.8
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 6.6e-20 101.3 158 45.6
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 1.1e-19 100.5 173 42.2
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.9e-19 99.8 138 47.8
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 1.6e-18 96.7 154 42.2
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 6.1e-18 94.7 133 45.1
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 6.1e-18 94.7 133 45.1
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 1.0e-17 94.0 149 42.3
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.4e-17 93.6 133 44.4
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.4e-17 93.6 149 42.3
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 4.0e-17 92.0 160 41.9
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 5.2e-17 91.7 169 38.5
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 1.2e-16 90.5 96 50.0
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 1.5e-16 90.1 96 50.0
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.4e-16 89.0 166 40.4
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 7.5e-16 87.8 134 46.3
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 9.8e-16 87.4 136 41.2
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 9.8e-16 87.4 154 39.0
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.3e-15 87.0 154 39.6
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 6.3e-15 84.7 157 40.8
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 8.3e-15 84.3 153 39.2
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 1.8e-14 83.2 100 44.0
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.4e-14 82.8 153 41.8
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.1e-14 82.0 105 45.7
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.7e-12 76.6 148 39.2
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.3e-12 76.3 126 42.9
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 8.6e-12 74.3 90 52.2
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 8.6e-12 74.3 90 52.2
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 8.6e-12 74.3 90 52.2
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-11 73.2 89 50.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.9e-11 73.2 79 51.9
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 2.5e-11 72.8 81 53.1
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 1.0e-09 67.4 101 41.6
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 2.3e-09 66.2 133 41.4
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 4.0e-09 65.5 113 44.2
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 4.0e-09 65.5 61 55.7
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.8e-09 64.7 129 39.5
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 4.4e-08 62.0 104 45.2
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 4.4e-08 62.0 104 45.2
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 4.4e-08 62.0 147 34.0
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.3e-07 60.5 122 42.6
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.3e-07 60.5 122 42.6
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.7e-07 60.1 116 42.2
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.2e-07 59.7 132 37.9
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 2.9e-07 59.3 143 35.0
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 6.4e-07 58.2 114 38.6
Ah.12g052340 Amaranthus hybridus HOM05D005006 ORTHO05D005903 8.3e-07 57.8 127 35.4
AUR62019816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 8.3e-07 57.8 51 56.9


User provided reference genes

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