Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu061044.1 Olea europaea HOM05D003018 ORTHO05D003402 1.7e-35 152.1 75 100.0
SGA_v2.0_scaffold165G38214 Striga asiatica HOM05D003018 ORTHO05D003402 1.7e-19 99.0 68 75.0
CANSAT21G0709 Cannabis sativa HOM05D003018 ORTHO05D003402 2.8e-19 98.2 73 68.5
MSTRG.26952 Avicennia marina HOM05D003018 ORTHO05D003402 8.2e-19 96.7 68 72.1
Migut.F00968 Erythranthe guttata HOM05D003018 ORTHO05D003402 8.2e-19 96.7 68 72.1
Cc02_g00590 Coffea canephora HOM05D003018 ORTHO05D003402 1.4e-18 95.9 71 71.8
Eucgr.K00480 Eucalyptus grandis HOM05D003018 ORTHO05D003402 1.4e-18 95.9 68 72.1
Eucgr.K00528 Eucalyptus grandis HOM05D003018 ORTHO05D003402 1.4e-18 95.9 68 72.1
Gohir.A12G244400 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.4e-18 95.9 68 69.1
Gohir.D12G245300 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.4e-18 95.9 68 69.1
Gorai.008G262900 Gossypium raimondii HOM05D003018 ORTHO05D003402 1.4e-18 95.9 68 69.1
Manes.05G197500 Manihot esculenta HOM05D003018 ORTHO05D003402 1.4e-18 95.9 68 67.6
MELO3C005915.2 Cucumis melo HOM05D003018 ORTHO05D003402 1.8e-18 95.5 68 70.6
CsaV3_5G000150 Cucumis sativus L. HOM05D003018 ORTHO05D003402 1.8e-18 95.5 68 70.6
Duzib084G0455 Durio zibethinus HOM05D003018 ORTHO05D003402 1.8e-18 95.5 68 70.6
Prupe.2G322200 Prunus persica HOM05D003018 ORTHO05D003402 1.8e-18 95.5 73 65.8
MD07G1303500 Malus domestica HOM05D003018 ORTHO05D003402 2.4e-18 95.1 73 65.8
Dinv17276 Davidia involucrata HOM05D003018 ORTHO05D003402 3.1e-18 94.7 68 70.6
MD01G1231500 Malus domestica HOM05D003018 ORTHO05D003402 3.1e-18 94.7 73 64.4
PGR142G0210 Punica granatum HOM05D003018 ORTHO05D003402 3.1e-18 94.7 68 69.1
arahy.Tifrunner.gnm1.ann1.KA8TW6 Arachis hypogaea HOM05D003018 ORTHO05D003402 4.1e-18 94.4 68 69.1
arahy.Tifrunner.gnm1.ann1.SR3247 Arachis hypogaea HOM05D003018 ORTHO05D003402 4.1e-18 94.4 68 69.1
ClCG00G004180 Citrullus lanatus HOM05D003018 ORTHO05D003402 4.1e-18 94.4 68 69.1
Duzib068G0518 Durio zibethinus HOM05D003018 ORTHO05D003402 4.1e-18 94.4 68 69.1
Dinv29191 Davidia involucrata HOM05D003018 ORTHO05D003402 5.3e-18 94.0 68 69.1
Gohir.A11G017100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 5.3e-18 94.0 68 70.6
Lalb_Chr23g0272051 Lupinus albus HOM05D003018 ORTHO05D003402 5.3e-18 94.0 73 65.8
Ca_16839_v3 Cicer arietinum L. HOM05D003018 ORTHO05D003402 7.0e-18 93.6 73 64.4
Duzib205G1477 Durio zibethinus HOM05D003018 ORTHO05D003402 7.0e-18 93.6 68 69.1
CSS0041512 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 9.1e-18 93.2 68 69.1
Migut.F00122 Erythranthe guttata HOM05D003018 ORTHO05D003402 9.1e-18 93.2 68 69.1
Oeu017358.1 Olea europaea HOM05D003018 ORTHO05D003402 9.1e-18 93.2 68 69.1
ATR0582G341 Amborella trichopoda HOM05D003018 ORTHO05D003402 1.6e-17 92.4 68 66.2
Gohir.D11G016900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.6e-17 92.4 68 69.1
QL09p005993 Quercus lobata HOM05D003018 ORTHO05D003402 1.6e-17 92.4 68 69.1
Sed0009908 Sechium edule HOM05D003018 ORTHO05D003402 1.6e-17 92.4 68 67.6
unitig_62.g23859 Utricularia gibba HOM05D003018 ORTHO05D003402 1.6e-17 92.4 68 69.1
unitig_64.g29776 Utricularia gibba HOM05D000525 ORTHO05D001368 1.6e-17 92.4 68 69.1
GSVIVG01038683001 Vitis vinifera HOM05D003018 ORTHO05D003402 2.0e-17 92.0 68 67.6
Actinidia34288 Actinidia chinensis HOM05D003018 ORTHO05D003402 2.6e-17 91.7 68 66.2
CDE06G0409 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 2.6e-17 91.7 67 65.7
TWI39G0588 Tripterygium wilfordii HOM05D003018 ORTHO05D003402 2.6e-17 91.7 68 69.1
PGR042G2079 Punica granatum HOM05D003018 ORTHO05D003402 3.5e-17 91.3 68 64.7
Sabra15G0000400 Salix brachista HOM05D003018 ORTHO05D003402 3.5e-17 91.3 68 64.7
unitig_52.g16865 Utricularia gibba HOM05D003018 ORTHO05D003402 3.5e-17 91.3 68 66.2
PSO017G1017 Papaver somniferum HOM05D003018 ORTHO05D003402 4.5e-17 90.9 68 66.2
PSO478G2764 Papaver somniferum HOM05D003018 ORTHO05D003402 4.5e-17 90.9 68 66.2
Nitab4.5_0000021g0210 Nicotiana tabacum HOM05D003018 ORTHO05D003402 5.9e-17 90.5 71 62.0
Phvul.009G040400 Phaseolus vulgaris HOM05D003018 ORTHO05D003402 5.9e-17 90.5 68 67.6
Potri.015G000600 Populus trichocarpa HOM05D003018 ORTHO05D003402 5.9e-17 90.5 68 64.7
DCAR_010557 Daucus carota HOM05D003018 ORTHO05D003402 7.7e-17 90.1 68 67.6
SalBow4G0431 Salvia bowleyana HOM05D003018 ORTHO05D003402 7.7e-17 90.1 68 67.6
TAR374G1266 Trochodendron aralioides HOM05D003018 ORTHO05D003402 7.7e-17 90.1 68 63.2
Cpa.g.sc3.188 Carica papaya HOM05D003018 ORTHO05D003402 1.3e-16 89.4 68 66.2
ECA232G4756 Erigeron canadensis HOM05D003018 ORTHO05D003402 1.3e-16 89.4 68 63.2
Eucgr.A00976 Eucalyptus grandis HOM05D003018 ORTHO05D003402 1.3e-16 89.4 68 64.7
Nitab4.5_0007121g0040 Nicotiana tabacum HOM05D003018 ORTHO05D003402 1.3e-16 89.4 68 63.2
TAR375G0624 Trochodendron aralioides HOM05D003018 ORTHO05D003402 1.3e-16 89.4 68 64.7
Gohir.A09G187100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.7e-16 89.0 68 67.6
Lj1g0024936 Lotus japonicus HOM05D003018 ORTHO05D003402 1.7e-16 89.0 68 67.6
Nn2g15903 Nelumbo nucifera HOM05D003018 ORTHO05D003402 1.7e-16 89.0 68 64.7
Actinidia08721 Actinidia chinensis HOM05D003018 ORTHO05D003402 2.2e-16 88.6 68 63.2
CAN.G303.60 Capsicum annuum HOM05D003018 ORTHO05D003402 2.2e-16 88.6 68 63.2
Glyma.04G225600 Glycine max HOM05D003018 ORTHO05D003402 2.2e-16 88.6 68 66.2
Hma1.2p1_0115F.1_g055830 Hydrangea macrophylla HOM05D003018 ORTHO05D003402 2.2e-16 88.6 68 64.7
Rhsim03G0218500 Rhododendron simsii HOM05D003018 ORTHO05D003402 2.2e-16 88.6 71 63.4
Solyc03g079940.3 Solanum lycopersicum HOM05D003018 ORTHO05D003402 2.2e-16 88.6 68 63.2
Sopen03g027480 Solanum pennellii HOM05D003018 ORTHO05D003402 2.2e-16 88.6 68 63.2
PGSC0003DMG400000572 Solanum tuberosum HOM05D003018 ORTHO05D003402 2.2e-16 88.6 68 63.2
Thecc.03G212100 Theobroma cacao HOM05D003018 ORTHO05D003402 2.2e-16 88.6 68 64.7
HPP92_007053 Vanilla planifolia HOM05D003018 ORTHO05D003402 2.2e-16 88.6 68 63.2
Glyma.06G139200 Glycine max HOM05D003018 ORTHO05D003402 2.9e-16 88.2 68 64.7
VMungo1309G0595 Vigna mungo HOM05D003018 ORTHO05D003402 2.9e-16 88.2 68 66.2
Gorai.006G203900 Gossypium raimondii HOM05D003018 ORTHO05D003402 5.0e-16 87.4 68 67.6
Haze_00335 Corylus avellana HOM05D003018 ORTHO05D003402 6.5e-16 87.0 68 66.2
Medtr3g093380 Medicago truncatula HOM05D003018 ORTHO05D003402 6.5e-16 87.0 72 63.9
Psat5g071120 Pisum sativum HOM05D003018 ORTHO05D003402 6.5e-16 87.0 74 62.2
vmacro06475 Vaccinium macrocarpon HOM05D003018 ORTHO05D003402 8.5e-16 86.7 68 63.2
MBI07_g11061_MAGBIO Magnolia biondii HOM05D003018 ORTHO05D003402 1.1e-15 86.3 68 63.2
Peaxi162Scf01026g00260 Petunia axillaris HOM05D003018 ORTHO05D003402 1.1e-15 86.3 68 64.7
Lalb_Chr11g0067561 Lupinus albus HOM05D003018 ORTHO05D003402 1.5e-15 85.9 68 63.2
CDE02G1662 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 2.5e-15 85.1 68 61.8
CiPaw.06G038200 Carya illinoinensis HOM05D003018 ORTHO05D003402 3.2e-15 84.7 68 63.2
Lj3C891T18 Lonicera japonica HOM05D003018 ORTHO05D003402 3.2e-15 84.7 68 63.2
Lalb_Chr08g0239401 Lupinus albus HOM05D003018 ORTHO05D003402 3.2e-15 84.7 68 63.2
Potri.012G004600 Populus trichocarpa HOM05D003018 ORTHO05D003402 3.2e-15 84.7 68 61.8
TPR.G35918 Trifolium pratense HOM05D003018 ORTHO05D003402 5.5e-15 84.0 73 61.6
Sc19g0000360 Simmondsia chinensis HOM05D003018 ORTHO05D003402 7.2e-15 83.6 67 61.2
CiPaw.05G208700 Carya illinoinensis HOM05D003018 ORTHO05D003402 9.4e-15 83.2 70 61.4
Aqoxy5G02912 Aquilegia oxysepala HOM05D003018 ORTHO05D003402 1.6e-14 82.4 68 61.8
HanXRQChr10g0283991 Helianthus annuus HOM05D003018 ORTHO05D003402 1.6e-14 82.4 68 60.3
HanXRQChr16g0499771 Helianthus annuus HOM05D003018 ORTHO05D003402 1.6e-14 82.4 68 60.3
Lsat_1_v5_gn_0_9661 Lactuca sativa HOM05D003018 ORTHO05D003402 1.6e-14 82.4 71 60.6
Atru.chr12.2500 Acer truncatum HOM05D003018 ORTHO05D003402 4.7e-14 80.9 68 60.3
CiPaw.05G209100 Carya illinoinensis HOM05D003018 ORTHO05D003402 4.7e-14 80.9 70 60.0
SEGI_14341 Sequoiadendron giganteum HOM05D003018 ORTHO05D003402 4.7e-14 80.9 67 59.7
Atru.chr12.2524 Acer truncatum HOM05D003018 ORTHO05D003402 1.0e-13 79.7 68 58.8
Os04g0405100 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 2.3e-13 78.6 68 57.4
RcHm_v2.0_Chr1g0383311 Rosa chinensis HOM05D003018 ORTHO05D003402 8.8e-13 76.6 77 53.2
Sed0018717 Sechium edule HOM05D003018 ORTHO05D003402 1.2e-12 76.3 70 60.0
AUR62028118 Chenopodium quinoa HOM05D003018 ORTHO05D003402 2.0e-12 75.5 69 60.9
Zm00001eb242440 Zea mays HOM05D003018 ORTHO05D003402 2.0e-12 75.5 68 57.4
AUR62005947 Chenopodium quinoa HOM05D003018 ORTHO05D003402 3.4e-12 74.7 69 59.4
Mapoly0083s0018 Marchantia polymorpha HOM05D003018 ORTHO05D003402 4.4e-12 74.3 68 54.4
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 5.7e-12 73.9 57 66.7
FvH4_7g33330 Fragaria vesca HOM05D003018 ORTHO05D003402 5.7e-12 73.9 70 55.7
EL10Ac3g05130 Beta vulgaris HOM05D003018 ORTHO05D003402 7.5e-12 73.6 70 57.1
FAN03G3459 Fragaria x ananassa HOM05D003018 ORTHO05D003402 2.2e-11 72.0 70 54.3
Pp3c25_7060 Physcomitrium patens HOM05D003018 ORTHO05D003402 3.7e-11 71.2 68 52.9
FAN01G2324 Fragaria x ananassa HOM05D003018 ORTHO05D003402 4.8e-11 70.9 70 54.3
Zm00001eb181270 Zea mays HOM05D003018 ORTHO05D003402 6.3e-11 70.5 68 52.9
Zm00001eb084410 Zea mays HOM05D003018 ORTHO05D003402 1.4e-10 69.3 68 54.4
Ah.13g071050 Amaranthus hybridus HOM05D003018 ORTHO05D003402 1.8e-10 68.9 70 52.9
FAN10G1538 Fragaria x ananassa HOM05D003018 ORTHO05D003402 1.8e-10 68.9 70 51.4
SMO356G0102 Selaginella moellendorffii HOM05D003018 ORTHO05D003402 4.1e-10 67.8 71 46.5
FAN10G3922 Fragaria x ananassa HOM05D003018 ORTHO05D003402 5.3e-10 67.4 70 50.0
Lsat_1_v5_gn_2_3400 Lactuca sativa HOM05D003018 ORTHO05D003402 9.1e-10 66.6 68 52.9
Ciclev10021773m.g Citrus clementina HOM05D003018 ORTHO05D003402 7.7e-09 63.5 70 48.6
CDE02G1646 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 1.9e-07 58.9 44 65.9
ClCG01G000020 Citrullus lanatus HOM05D003018 ORTHO05D003402 3.2e-07 58.2 35 71.4
BcaNung02005 Brassica carinata HOM05D003018 ORTHO05D003402 2.7e-06 55.1 67 47.8
A06p35470 Brassica napus HOM05D003018 ORTHO05D003402 2.7e-06 55.1 67 47.8
C07p43070 Brassica napus HOM05D003018 ORTHO05D003402 2.7e-06 55.1 67 47.8
BolC7t44834H Brassica oleracea HOM05D003018 ORTHO05D003402 2.7e-06 55.1 67 47.8
BraA06t26470Z Brassica rapa HOM05D003018 ORTHO05D003402 2.7e-06 55.1 67 47.8
Sp2g22740 Schrenkiella parvula HOM05D003018 ORTHO05D003402 2.7e-06 55.1 67 47.8
Aa31LG11G3900 Aethionema arabicum HOM05D003018 ORTHO05D003402 6.1e-06 53.9 67 46.3
AL6G36250 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 6.1e-06 53.9 67 47.8
BcaNung01249 Brassica carinata HOM05D003018 ORTHO05D003402 6.1e-06 53.9 67 46.3
Carub.0006s2250 Capsella rubella HOM05D003018 ORTHO05D003402 8.0e-06 53.5 67 47.8
COL.COLO4_14400 Corchorus olitorius HOM05D003018 ORTHO05D003402 8.0e-06 53.5 45 64.4


User provided reference genes

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