Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu060884.1 Olea europaea HOM05D002034 ORTHO05D004251 4.8e-76 287.7 143 100.0
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 3.5e-26 122.1 291 33.0
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 4.0e-22 108.6 320 30.0
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 5.2e-22 108.2 185 38.4
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 6.8e-22 107.8 318 29.2
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 1.5e-21 106.7 318 29.2
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 2.6e-21 105.9 318 29.6
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 4.4e-21 105.1 318 29.2
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 5.8e-21 104.8 225 33.8
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 1.3e-20 103.6 211 34.1
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 1.7e-20 103.2 208 34.1
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.2e-20 102.8 319 29.5
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 2.9e-20 102.4 319 29.5
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 2.9e-20 102.4 318 28.3
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 3.7e-20 102.1 206 33.5
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 4.9e-20 101.7 318 28.6
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 4.9e-20 101.7 219 33.8
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 6.4e-20 101.3 218 33.5
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 6.4e-20 101.3 218 32.6
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 6.4e-20 101.3 219 34.2
CSS0015957 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 8.3e-20 100.9 220 34.1
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 1.1e-19 100.5 218 32.6
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 2.4e-19 99.4 218 32.1
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 3.2e-19 99.0 217 33.2
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 4.1e-19 98.6 208 32.7
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 4.1e-19 98.6 217 32.3
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 9.2e-19 97.4 318 29.2
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 1.2e-18 97.1 220 31.8
Cpa.g.sc2.385 Carica papaya HOM05D002034 ORTHO05D004251 1.2e-18 97.1 191 33.5
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 1.2e-18 97.1 318 28.6
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 1.2e-18 97.1 218 32.6
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 1.2e-18 97.1 222 31.5
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 2.1e-18 96.3 219 33.3
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 2.1e-18 96.3 226 31.4
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.1e-18 96.3 219 31.5
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 2.7e-18 95.9 217 32.7
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.7e-18 95.9 217 32.7
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 3.5e-18 95.5 214 34.1
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 3.5e-18 95.5 219 31.5
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 4.6e-18 95.1 212 31.6
CSS0014057 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.6e-18 95.1 206 33.5
CSS0025945 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.6e-18 95.1 206 33.5
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 4.6e-18 95.1 192 33.3
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 4.6e-18 95.1 321 28.0
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 4.6e-18 95.1 222 30.6
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 4.6e-18 95.1 319 27.9
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 6.0e-18 94.7 317 28.1
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 6.0e-18 94.7 213 31.0
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 7.8e-18 94.4 216 33.3
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 7.8e-18 94.4 217 32.3
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.0e-17 94.0 222 31.1
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.0e-17 94.0 222 31.1
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 1.0e-17 94.0 311 27.7
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.0e-17 94.0 208 32.2
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 1.0e-17 94.0 208 32.2
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 1.0e-17 94.0 219 32.0
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 1.0e-17 94.0 219 33.3
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.3e-17 93.6 208 32.2
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.7e-17 93.2 219 32.9
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 1.7e-17 93.2 219 32.9
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 1.7e-17 93.2 219 32.9
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 1.7e-17 93.2 180 33.9
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 1.7e-17 93.2 225 30.7
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 2.3e-17 92.8 222 30.6
Peaxi162Scf00808g00011 Petunia axillaris HOM05D002034 ORTHO05D004251 2.3e-17 92.8 190 34.2
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 3.0e-17 92.4 225 30.2
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.0e-17 92.4 207 33.3
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 3.0e-17 92.4 229 31.0
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 3.0e-17 92.4 217 30.9
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 3.9e-17 92.0 192 32.8
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 3.9e-17 92.0 218 32.6
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 5.0e-17 91.7 219 32.9
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 5.0e-17 91.7 220 30.0
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 5.0e-17 91.7 213 30.0
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 8.6e-17 90.9 192 32.8
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 8.6e-17 90.9 213 31.9
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 8.6e-17 90.9 208 32.7
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 8.6e-17 90.9 213 31.9
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 8.6e-17 90.9 219 31.1
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 1.5e-16 90.1 196 33.7
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 1.9e-16 89.7 192 33.3
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 1.9e-16 89.7 222 31.1
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.5e-16 89.4 208 31.7
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 3.3e-16 89.0 220 30.0
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 7.3e-16 87.8 229 30.1
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 7.3e-16 87.8 226 31.9
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 9.5e-16 87.4 218 30.7
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 1.2e-15 87.0 181 32.0
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.2e-15 87.0 215 30.2
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 1.2e-15 87.0 321 27.1
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 1.6e-15 86.7 218 31.2
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.6e-15 86.7 218 30.7
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 2.1e-15 86.3 218 31.7
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 2.8e-15 85.9 218 30.3
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 2.8e-15 85.9 213 29.6
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 4.7e-15 85.1 218 30.3
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 4.7e-15 85.1 207 31.9
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 4.7e-15 85.1 207 31.9
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 6.2e-15 84.7 181 30.9
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 1.4e-14 83.6 118 43.2
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.8e-14 83.2 86 51.2
Lj1C128T10 Lonicera japonica HOM05D002034 ORTHO05D004251 1.8e-14 83.2 102 46.1
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.3e-14 82.8 87 49.4
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 3.1e-14 82.4 220 30.0
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 8.9e-14 80.9 218 31.2
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 1.5e-13 80.1 90 46.7
FAN21G1045 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.0e-13 79.7 101 45.5
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 2.0e-13 79.7 220 30.0
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 2.6e-13 79.3 97 46.4
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 7.5e-13 77.8 129 37.2
HPP92_012024 Vanilla planifolia HOM05D002034 ORTHO05D004251 1.7e-12 76.6 82 50.0
SEGI_18638 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 6.4e-12 74.7 104 39.4
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 8.3e-12 74.3 87 47.1
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 2.4e-11 72.8 99 41.4
Actinidia32621 Actinidia chinensis HOM05D002034 ORTHO05D004251 3.2e-11 72.4 93 41.9
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.6e-10 68.6 229 25.8
TAR209G0006 Trochodendron aralioides HOM05D002034 ORTHO05D004251 3.9e-09 65.5 108 38.0
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 1.1e-08 63.9 124 31.5
CSS0002014 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.8e-07 59.3 67 49.3
CSS0042911 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.8e-07 59.3 68 47.1
CSS0015510 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.4e-06 56.2 97 38.1
CSS0018399 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.4e-06 56.2 97 38.1
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 3.1e-06 55.8 93 34.4
CiPaw.13G071900 Carya illinoinensis HOM05D002034 ORTHO05D004251 5.2e-06 55.1 162 27.8
HPP92_012415 Vanilla planifolia HOM05D001434 ORTHO05D004586 6.8e-06 54.7 82 40.2


User provided reference genes

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