Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 5.8e-89 330.9 169 100.0
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 3.4e-44 182.2 160 65.6
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 3.4e-44 182.2 156 65.4
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 5.7e-44 181.4 160 66.2
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 5.7e-44 181.4 160 66.2
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 7.5e-44 181.0 160 65.6
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.7e-43 179.9 160 65.0
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.7e-43 179.9 160 65.6
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.7e-43 179.9 160 65.6
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.2e-43 179.5 156 65.4
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 2.8e-43 179.1 160 64.4
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.7e-43 178.7 160 65.6
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 3.7e-43 178.7 160 65.6
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.7e-43 178.7 164 65.9
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 3.7e-43 178.7 161 64.6
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 3.7e-43 178.7 160 65.0
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 4.8e-43 178.3 161 64.0
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 4.8e-43 178.3 160 65.6
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 4.8e-43 178.3 160 65.0
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 4.8e-43 178.3 160 65.0
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 6.3e-43 177.9 160 65.0
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 6.3e-43 177.9 160 65.0
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 6.3e-43 177.9 160 65.0
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 6.3e-43 177.9 160 65.0
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 8.3e-43 177.6 160 64.4
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 8.3e-43 177.6 160 64.4
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 8.3e-43 177.6 160 64.4
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 8.3e-43 177.6 161 64.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 8.3e-43 177.6 161 64.0
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.1e-42 177.2 156 63.5
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.1e-42 177.2 160 63.8
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.1e-42 177.2 160 64.4
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.1e-42 177.2 160 64.4
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.1e-42 177.2 160 65.0
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 1.4e-42 176.8 160 64.4
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.4e-42 176.8 160 64.4
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.4e-42 176.8 160 64.4
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.8e-42 176.4 160 64.4
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.8e-42 176.4 160 65.0
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.8e-42 176.4 156 63.5
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.8e-42 176.4 160 65.0
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.4e-42 176.0 160 64.4
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 2.4e-42 176.0 160 65.0
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.4e-42 176.0 156 63.5
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 2.4e-42 176.0 160 64.4
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 2.4e-42 176.0 160 63.8
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 2.4e-42 176.0 160 64.4
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 3.1e-42 175.6 160 63.1
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 3.1e-42 175.6 160 63.1
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 4.1e-42 175.3 160 63.1
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 4.1e-42 175.3 160 64.4
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 4.1e-42 175.3 160 63.8
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 4.1e-42 175.3 160 63.8
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 4.1e-42 175.3 156 62.8
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 5.4e-42 174.9 160 63.1
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.4e-42 174.9 160 63.1
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.4e-42 174.9 160 63.1
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 5.4e-42 174.9 157 63.7
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 5.4e-42 174.9 160 63.1
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 9.1e-42 174.1 160 63.1
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.2e-41 173.7 160 62.5
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.2e-41 173.7 160 62.5
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-41 173.7 160 63.1
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.6e-41 173.3 160 63.1
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.6e-41 173.3 160 63.1
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.6e-41 173.3 160 63.8
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.6e-41 173.3 160 63.1
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.0e-41 172.9 160 62.5
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.0e-41 172.9 160 62.5
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.0e-41 172.9 160 62.5
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 2.0e-41 172.9 156 62.8
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.0e-41 172.9 160 62.5
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 2.7e-41 172.6 160 62.5
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 3.5e-41 172.2 156 63.5
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 3.5e-41 172.2 160 61.9
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 3.5e-41 172.2 160 61.9
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 3.5e-41 172.2 160 62.5
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 4.5e-41 171.8 160 62.5
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.5e-41 171.8 160 62.5
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 4.5e-41 171.8 160 61.9
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 4.5e-41 171.8 160 63.1
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 5.9e-41 171.4 160 62.5
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 5.9e-41 171.4 160 62.5
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 5.9e-41 171.4 160 62.5
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.7e-41 171.0 160 61.9
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 7.7e-41 171.0 156 62.2
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 7.7e-41 171.0 160 61.9
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 7.7e-41 171.0 160 62.5
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 7.7e-41 171.0 160 63.1
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 7.7e-41 171.0 160 62.5
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 7.7e-41 171.0 162 62.3
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.3e-40 170.2 160 61.9
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.3e-40 170.2 160 61.9
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.7e-40 169.9 160 61.2
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.7e-40 169.9 160 61.2
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 2.3e-40 169.5 160 60.6
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 5.0e-40 168.3 160 60.6
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 6.6e-40 167.9 160 61.2
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 6.6e-40 167.9 165 62.4
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.1e-39 167.2 160 60.6
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.5e-39 166.8 156 61.5
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.5e-39 166.8 156 62.2
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 9.5e-39 164.1 157 60.5
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.6e-38 163.3 156 60.9
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 2.8e-38 162.5 170 57.6
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.8e-38 162.5 161 59.6
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 6.1e-38 161.4 161 59.0
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 3.4e-36 155.6 160 59.4
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 7.5e-36 154.5 160 56.9
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 7.5e-36 154.5 160 58.1
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 7.5e-36 154.5 160 58.1
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.8e-35 152.5 160 57.5
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 6.3e-35 151.4 134 62.7
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 6.3e-35 151.4 156 58.3
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 9.2e-34 147.5 139 63.3
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.7e-33 146.0 160 55.0
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.7e-33 146.0 156 53.2
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 3.5e-33 145.6 142 62.0
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 3.5e-33 145.6 158 54.4
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 2.5e-31 139.4 146 56.8
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 6.1e-30 134.8 166 54.2
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 4.4e-28 128.6 160 50.6
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.9e-27 125.9 86 77.9
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 6.4e-27 124.8 161 44.7
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 5.4e-26 121.7 161 43.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 3.5e-25 119.0 151 45.0
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 3.5e-25 119.0 161 42.9
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.7e-24 116.7 124 58.1
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 4.4e-20 102.1 154 46.8
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 5.8e-20 101.7 115 54.8
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 5.8e-20 101.7 156 37.8
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-19 100.5 155 47.1
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 2.3e-16 89.7 160 40.6
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.3e-16 89.7 161 36.0
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 4.7e-14 82.0 105 52.4
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 4.7e-14 82.0 158 36.7
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.4e-13 80.5 162 31.5
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.8e-13 80.1 83 61.4
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.3e-13 79.7 71 62.0
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 8.9e-13 77.8 156 33.3
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.7e-11 73.6 96 51.0
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 2.2e-11 73.2 134 38.8
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 4.1e-10 68.9 65 61.5
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 7.1e-10 68.2 35 91.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 9.2e-10 67.8 84 45.2
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 6.0e-09 65.1 61 57.4
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 7.8e-09 64.7 71 54.9
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 7.8e-09 64.7 35 85.7
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 5.1e-08 62.0 48 62.5
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 2.5e-07 59.7 29 93.1


User provided reference genes

Program Settings