Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.7e-296 1021.9 519 100.0
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 7.1e-77 292.4 542 39.7
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 4.6e-68 263.1 534 39.1
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 9.6e-66 255.4 527 38.1
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 5.6e-58 229.6 529 35.9
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 4.9e-54 216.5 552 34.4
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 1.4e-53 214.9 537 34.3
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 1.9e-53 214.5 551 35.4
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 6.0e-52 209.5 553 34.5
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.0e-51 208.8 548 33.4
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.0e-51 208.8 529 33.5
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 5.1e-51 206.5 547 35.5
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 9.6e-50 202.2 537 34.6
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 4.8e-49 199.9 531 34.5
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 6.2e-49 199.5 453 36.6
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 8.2e-49 199.1 540 33.3
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 8.2e-49 199.1 549 33.5
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 9.0e-48 195.7 542 33.2
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 1.5e-47 194.9 554 32.5
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 1.5e-47 194.9 179 62.0
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 2.0e-47 194.5 605 32.1
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 2.6e-47 194.1 323 40.9
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.4e-47 193.7 533 33.4
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 4.5e-47 193.4 536 33.4
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 7.6e-47 192.6 530 32.6
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 2.9e-46 190.7 559 33.3
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 8.4e-46 189.1 564 32.3
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.4e-45 188.3 541 32.9
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 5.5e-45 186.4 177 57.6
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.2e-44 185.3 545 31.7
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.7e-44 184.1 524 31.9
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 2.7e-44 184.1 523 32.1
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.3e-43 181.8 540 32.4
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 1.8e-43 181.4 555 31.7
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 2.3e-43 181.0 437 37.5
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 6.7e-43 179.5 539 33.2
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 6.7e-43 179.5 538 31.4
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 6.7e-43 179.5 540 32.2
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.5e-42 178.3 545 31.4
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.5e-42 178.3 545 31.4
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.9e-42 177.9 549 31.0
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 2.5e-42 177.6 541 31.2
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 3.3e-42 177.2 159 59.1
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 4.3e-42 176.8 544 31.1
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 9.6e-42 175.6 163 58.3
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.1e-41 174.5 537 33.0
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 4.8e-41 173.3 543 32.0
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 6.3e-41 172.9 540 30.6
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 8.2e-41 172.6 536 31.0
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.1e-40 172.2 535 32.7
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.4e-40 171.8 553 31.8
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 4.1e-40 170.2 148 64.2
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 5.3e-40 169.9 173 55.5
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 6.9e-40 169.5 159 58.5
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 2.6e-39 167.5 214 48.6
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 3.4e-39 167.2 151 62.3
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 3.4e-39 167.2 235 45.5
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 4.5e-39 166.8 157 59.9
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 7.6e-39 166.0 157 60.5
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 7.6e-39 166.0 150 62.7
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 1.0e-38 165.6 148 62.2
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 1.3e-38 165.2 158 60.8
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 5.0e-38 163.3 555 32.3
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 5.0e-38 163.3 206 48.1
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 2.5e-37 161.0 113 69.0
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 2.5e-37 161.0 172 52.9
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 5.5e-37 159.8 536 31.0
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 9.3e-37 159.1 115 69.6
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 9.3e-37 159.1 209 48.8
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 2.1e-36 157.9 533 31.3
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 2.7e-36 157.5 210 47.6
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 4.6e-36 156.8 114 68.4
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 4.6e-36 156.8 541 31.1
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 6.1e-36 156.4 114 68.4
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 7.9e-36 156.0 113 68.1
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 7.9e-36 156.0 549 28.1
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 7.9e-36 156.0 134 62.7
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 6.7e-35 152.9 148 58.8
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.3e-33 148.7 230 45.2
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 2.8e-33 147.5 149 57.7
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 3.7e-33 147.1 257 42.4
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 6.3e-33 146.4 106 67.9
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 4.1e-32 143.7 548 29.6
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 4.5e-31 140.2 500 30.2
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 1.0e-30 139.0 117 63.2
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.3e-30 138.7 558 28.3
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.7e-30 138.3 554 29.2
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 5.0e-30 136.7 531 27.1
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.0e-27 129.0 560 27.7
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 1.4e-27 128.6 135 50.4
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 3.9e-27 127.1 533 28.7
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 5.1e-27 126.7 119 56.3
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 5.1e-27 126.7 408 31.1
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 6.7e-27 126.3 540 28.9
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 2.0e-26 124.8 529 29.3
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 2.0e-26 124.8 529 29.3
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.0e-26 124.8 121 56.2
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.7e-25 121.7 206 40.3
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.1e-24 119.0 107 57.9
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.8e-24 118.2 538 28.8
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 6.9e-24 116.3 92 65.2
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.5e-23 115.2 497 27.4
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 2.0e-23 114.8 538 26.6
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 3.4e-23 114.0 211 37.9
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 7.7e-23 112.8 100 57.0
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 2.9e-22 110.9 192 39.6
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 4.2e-21 107.1 496 27.8
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 1.6e-20 105.1 550 25.8
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 3.6e-20 104.0 109 56.0
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 1.4e-19 102.1 186 38.2
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 3.0e-19 100.9 128 48.4
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 3.9e-19 100.5 64 76.6
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 1.5e-18 98.6 87 58.6
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 1.5e-18 98.6 64 75.0
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 5.0e-14 83.6 75 56.0
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.4e-11 75.5 174 31.6
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 2.3e-11 74.7 94 46.8
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 3.0e-11 74.3 72 47.2
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 3.0e-11 74.3 94 44.7
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 3.0e-11 74.3 82 42.7
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 6.7e-11 73.2 94 45.7
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 8.8e-11 72.8 78 42.3
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.5e-10 72.0 77 41.6
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 3.3e-10 70.9 85 41.2
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 7.5e-10 69.7 82 40.2
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 7.5e-10 69.7 529 22.9
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 9.7e-10 69.3 181 29.3
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.3e-09 68.9 79 40.5
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 1.3e-09 68.9 101 34.7
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.7e-09 68.6 144 32.6
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 1.7e-09 68.6 73 46.6
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 2.2e-09 68.2 78 43.6
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.8e-09 67.8 249 25.7
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 2.8e-09 67.8 82 39.0
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 3.7e-09 67.4 85 38.8
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 8.2e-09 66.2 82 37.8
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.1e-08 65.9 77 41.6
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.8e-08 65.1 180 26.7
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 2.4e-08 64.7 79 39.2
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.4e-08 64.7 148 27.7
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 2.4e-08 64.7 74 39.2
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 2.4e-08 64.7 230 27.8
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 2.4e-08 64.7 59 50.8
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 3.1e-08 64.3 95 34.7
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 3.1e-08 64.3 218 28.0
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 4.1e-08 63.9 70 47.1
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 5.3e-08 63.5 299 23.1
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 7.0e-08 63.2 54 50.0
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 7.0e-08 63.2 61 49.2
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.2e-07 62.4 91 40.7
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.6e-07 62.0 63 47.6
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 2.0e-07 61.6 71 42.3
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.0e-07 61.6 77 36.4
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 2.7e-07 61.2 85 32.9
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 3.5e-07 60.8 63 47.6
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 3.5e-07 60.8 67 40.3
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 5.9e-07 60.1 63 46.0
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 5.9e-07 60.1 56 46.4
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 5.9e-07 60.1 220 23.2
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 1.0e-06 59.3 84 38.1
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 1.0e-06 59.3 63 44.4
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 1.0e-06 59.3 78 37.2
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.0e-06 59.3 78 34.6
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 1.3e-06 58.9 63 44.4
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 1.3e-06 58.9 85 38.8
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 1.7e-06 58.5 217 24.9
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 2.2e-06 58.2 247 24.3
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 2.9e-06 57.8 63 42.9
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 2.9e-06 57.8 63 42.9
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 2.9e-06 57.8 84 34.5
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 3.8e-06 57.4 92 38.0
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 5.0e-06 57.0 54 48.1
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 5.0e-06 57.0 65 41.5
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 5.0e-06 57.0 274 24.1
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea HOM05D008057 ORTHO05D003476 8.5e-06 56.2 84 36.9
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 8.5e-06 56.2 85 37.6


User provided reference genes

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