Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu060080.1 Olea europaea HOM05D003394 ORTHO05D287472 1.5e-90 336.3 188 100.0
Oeu029424.1 Olea europaea HOM05D003394 ORTHO05D004183 1.7e-20 103.6 59 91.5
Glyma.13G136200 Glycine max HOM05D003394 ORTHO05D004183 6.4e-20 101.7 59 88.1
RcHm_v2.0_Chr3g0468431 Rosa chinensis HOM05D003394 ORTHO05D004183 4.2e-19 99.0 59 88.1
FvH4_6g15130 Fragaria vesca HOM05D003394 ORTHO05D004183 9.3e-19 97.8 59 88.1
FAN14G5170 Fragaria x ananassa HOM05D003394 ORTHO05D004183 9.3e-19 97.8 59 88.1
QL07p045546 Quercus lobata HOM05D003394 ORTHO05D004183 9.3e-19 97.8 57 89.5
FAN09G2519 Fragaria x ananassa HOM05D003394 ORTHO05D004183 1.6e-18 97.1 59 86.4
Glyma.10G048400 Glycine max HOM05D003394 ORTHO05D004183 1.6e-18 97.1 60 86.7
Glyma.03G177100 Glycine max HOM05D003394 ORTHO05D004183 2.7e-18 96.3 57 87.7
unitig_8.g4664 Utricularia gibba HOM05D003394 ORTHO05D004183 3.5e-18 95.9 59 84.7
Dinv35697 Davidia involucrata HOM05D003394 ORTHO05D004183 7.8e-18 94.7 59 86.4
Migut.L01654 Erythranthe guttata HOM05D003394 ORTHO05D004183 1.3e-17 94.0 59 78.0
Manes.09G070600 Manihot esculenta HOM05D003394 ORTHO05D004183 1.7e-17 93.6 53 90.6
Actinidia03017 Actinidia chinensis HOM05D003394 ORTHO05D057896 2.3e-17 93.2 226 35.8
Potri.016G084100 Populus trichocarpa HOM05D003394 ORTHO05D004183 2.3e-17 93.2 57 84.2
Cpa.g.sc1.277 Carica papaya HOM05D003394 ORTHO05D004183 3.0e-17 92.8 59 81.4
Cpa.g.sc2216.1 Carica papaya HOM05D003394 ORTHO05D004183 3.0e-17 92.8 59 81.4
Duzib093G0661 Durio zibethinus HOM05D003394 ORTHO05D004183 5.1e-17 92.0 59 81.4
Thecc.05G052300 Theobroma cacao HOM05D003394 ORTHO05D004183 6.6e-17 91.7 57 82.5
MD12G1126400 Malus domestica HOM05D003394 ORTHO05D004183 1.1e-16 90.9 59 83.1
Duzib128G1992 Durio zibethinus HOM05D003394 ORTHO05D004183 1.5e-16 90.5 54 85.2
Hma1.2p1_0111F.1_g053750 Hydrangea macrophylla HOM05D003394 ORTHO05D004183 1.5e-16 90.5 59 79.7
Atru.chr8.2539 Acer truncatum HOM05D003394 ORTHO05D004183 1.9e-16 90.1 57 82.5
COL.COLO4_27101 Corchorus olitorius HOM05D003394 ORTHO05D004183 1.9e-16 90.1 59 79.7
PGR142G1653 Punica granatum HOM05D003394 ORTHO05D004183 2.5e-16 89.7 59 81.4
Potri.006G132800 Populus trichocarpa HOM05D003394 ORTHO05D004183 3.3e-16 89.4 54 87.0
AL3G47810 Arabidopsis lyrata HOM05D003394 ORTHO05D004183 4.3e-16 89.0 53 86.8
AT2G20280 Arabidopsis thaliana HOM05D003394 ORTHO05D004183 4.3e-16 89.0 53 86.8
Glyma.19G177767 Glycine max HOM05D003394 ORTHO05D046728 4.3e-16 89.0 59 79.7
CiPaw.02G177300 Carya illinoinensis HOM05D003394 ORTHO05D004183 5.6e-16 88.6 53 83.0
C09p15140 Brassica napus HOM05D003394 ORTHO05D004183 1.3e-15 87.4 53 86.8
BolC9t54420H Brassica oleracea HOM05D003394 ORTHO05D004183 1.3e-15 87.4 53 86.8
BraA09t36921Z Brassica rapa HOM05D003394 ORTHO05D004183 1.3e-15 87.4 53 86.8
Carub.0003s3461 Capsella rubella HOM05D003394 ORTHO05D004183 1.3e-15 87.4 53 86.8
Thhalv10002021m.g Eutrema salsugineum HOM05D003394 ORTHO05D004183 1.3e-15 87.4 53 86.8
MBI14_g24892_MAGBIO Magnolia biondii HOM05D003394 ORTHO05D004183 1.3e-15 87.4 54 87.0
Sp3g33510 Schrenkiella parvula HOM05D003394 ORTHO05D004183 1.3e-15 87.4 53 86.8
Thecc.10G065500 Theobroma cacao HOM05D003394 ORTHO05D004183 1.3e-15 87.4 59 81.4
Nitab4.5_0000848g0130 Nicotiana tabacum HOM05D003394 ORTHO05D004183 1.6e-15 87.0 57 80.7
Nitab4.5_0006316g0020 Nicotiana tabacum HOM05D003394 ORTHO05D004183 1.6e-15 87.0 57 80.7
QL08p057203 Quercus lobata HOM05D003394 ORTHO05D004183 2.1e-15 86.7 54 85.2
HanXRQChr15g0496801 Helianthus annuus HOM05D003394 ORTHO05D004183 4.8e-15 85.5 57 80.7
PGSC0003DMG400027902 Solanum tuberosum HOM05D003394 ORTHO05D004183 4.8e-15 85.5 59 76.3
CsaV3_5G006370 Cucumis sativus L. HOM05D003394 ORTHO05D004183 6.2e-15 85.1 57 77.2
Migut.J00405 Erythranthe guttata HOM05D003394 ORTHO05D004183 1.1e-14 84.3 74 66.2
SalBow3G4124 Salvia bowleyana HOM05D003394 ORTHO05D004183 1.1e-14 84.3 56 80.4
HanXRQChr08g0219711 Helianthus annuus HOM05D003394 ORTHO05D004183 1.4e-14 84.0 59 76.3
Actinidia38239 Actinidia chinensis HOM05D003394 ORTHO05D004183 3.1e-14 82.8 59 76.3
HanXRQChr12g0370391 Helianthus annuus HOM05D003394 ORTHO05D004183 4.0e-14 82.4 57 77.2
Zm00001eb148820 Zea mays HOM05D003394 ORTHO05D004183 6.9e-14 81.6 59 74.6
Atru.chr12.617 Acer truncatum HOM05D003394 ORTHO05D004183 1.5e-13 80.5 59 71.2
Os01g0834700 Oryza sativa ssp. japonica HOM05D003394 ORTHO05D004183 2.0e-13 80.1 55 78.2
Lsat_1_v5_gn_8_20961 Lactuca sativa HOM05D003394 ORTHO05D004183 7.6e-13 78.2 59 71.2
Cc06_g03410 Coffea canephora HOM05D003394 ORTHO05D004183 1.3e-12 77.4 57 71.9
ECA233G1391 Erigeron canadensis HOM05D003394 ORTHO05D004183 1.7e-12 77.0 59 69.5
HanXRQChr17g0559121 Helianthus annuus HOM05D003394 ORTHO05D046728 2.2e-12 76.6 55 70.9
PSO339G1296 Papaver somniferum HOM05D003394 ORTHO05D004183 3.8e-12 75.9 59 69.5
PSO384G0969 Papaver somniferum HOM05D003394 ORTHO05D004183 3.8e-12 75.9 59 69.5
MD04G1114100 Malus domestica HOM05D003394 ORTHO05D004183 8.4e-12 74.7 48 83.3
Hma1.2p1_0348F.1_g131920 Hydrangea macrophylla HOM05D003394 ORTHO05D004183 1.1e-11 74.3 59 66.1
DCAR_019147 Daucus carota HOM05D003394 ORTHO05D004183 1.4e-11 73.9 62 66.1
BcaB03g16817 Brassica carinata HOM05D003394 ORTHO05D004183 1.9e-11 73.6 57 70.2
BcaB08g34902 Brassica carinata HOM05D003394 ORTHO05D004183 1.9e-11 73.6 57 70.2
BcaC06g36708 Brassica carinata HOM05D003394 ORTHO05D004183 1.9e-11 73.6 57 70.2
BcaC07g41222 Brassica carinata HOM05D003394 ORTHO05D004183 1.9e-11 73.6 57 70.2
BcaNung04098 Brassica carinata HOM05D003394 ORTHO05D004183 1.9e-11 73.6 57 70.2
A09p12770 Brassica napus HOM05D003394 ORTHO05D004183 1.9e-11 73.6 57 70.2
C07p00860 Brassica napus HOM05D003394 ORTHO05D004183 1.9e-11 73.6 57 70.2
BolC7t40525H Brassica oleracea HOM05D003394 ORTHO05D004183 1.9e-11 73.6 57 70.2
BolC8t51787H Brassica oleracea HOM05D003394 ORTHO05D004183 1.9e-11 73.6 57 70.2
BraA09t41282Z Brassica rapa HOM05D003394 ORTHO05D004183 2.4e-11 73.2 57 70.2
FvH4_7g20460 Fragaria vesca HOM05D003394 ORTHO05D004183 2.4e-11 73.2 53 73.6
FAN01G1405 Fragaria x ananassa HOM05D003394 ORTHO05D004183 2.4e-11 73.2 53 73.6
RcHm_v2.0_Chr1g0364371 Rosa chinensis HOM05D003394 ORTHO05D004183 2.4e-11 73.2 53 73.6
FAN03G2813 Fragaria x ananassa HOM05D003394 ORTHO05D004183 3.2e-11 72.8 53 73.6
FAN06G0926 Fragaria x ananassa HOM05D003394 ORTHO05D004183 3.2e-11 72.8 53 73.6
FAN06G2221 Fragaria x ananassa HOM05D003394 ORTHO05D004183 3.2e-11 72.8 53 73.6
Pp3c25_2690 Physcomitrium patens HOM05D003394 ORTHO05D004183 3.2e-11 72.8 54 75.9
COL.COLO4_23774 Corchorus olitorius HOM05D003394 ORTHO05D004183 4.2e-11 72.4 61 67.2
Pp3c6_18260 Physcomitrium patens HOM05D003394 ORTHO05D004183 4.2e-11 72.4 43 88.4
AagrBONN_evm.TU.Sc2ySwM_344.1346 Anthoceros agrestis HOM05D003394 ORTHO05D004183 9.3e-11 71.2 45 82.2
SalBow4G2948 Salvia bowleyana HOM05D003394 ORTHO05D004183 9.3e-11 71.2 59 64.4
Mapoly0100s0024 Marchantia polymorpha HOM05D003394 ORTHO05D004183 1.6e-10 70.5 45 82.2
SMO358G0089 Selaginella moellendorffii HOM05D003394 ORTHO05D004183 1.6e-10 70.5 55 72.7
CARHR110770 Cardamine hirsuta HOM05D003394 ORTHO05D004183 3.5e-10 69.3 53 71.7
Ciclev10012046m.g Citrus clementina HOM05D003394 ORTHO05D004183 1.0e-09 67.8 57 64.9
TWI15G1024 Tripterygium wilfordii HOM05D003394 ORTHO05D004183 1.0e-09 67.8 60 63.3
Oeu018422.1 Olea europaea HOM05D003394 ORTHO05D004183 1.3e-09 67.4 79 72.2
Dinv31373 Davidia involucrata HOM05D003394 ORTHO05D004183 1.8e-09 67.0 54 64.8
Manes.08G001802 Manihot esculenta HOM05D003394 ORTHO05D004183 2.3e-09 66.6 59 64.4
GSVIVG01016357001 Vitis vinifera HOM05D003394 ORTHO05D004183 5.1e-09 65.5 59 62.7
Gohir.A01G217900 Gossypium hirsutum HOM05D003394 ORTHO05D004183 6.7e-09 65.1 47 74.5
A07p00440 Brassica napus HOM05D003394 ORTHO05D004183 8.7e-09 64.7 59 61.0
CANSAT56G1215 Cannabis sativa HOM05D003394 ORTHO05D004183 8.7e-09 64.7 57 61.4
Gohir.D01G206800 Gossypium hirsutum HOM05D003394 ORTHO05D004183 1.1e-08 64.3 47 74.5
Gorai.002G251700 Gossypium raimondii HOM05D003394 ORTHO05D004183 1.1e-08 64.3 47 74.5
Sabra06G0104300 Salix brachista HOM05D003394 ORTHO05D004183 1.1e-08 64.3 57 64.9
PGR004G2225 Punica granatum HOM05D003394 ORTHO05D004183 3.3e-08 62.8 60 63.3
BraA07t27835Z Brassica rapa HOM05D003394 ORTHO05D004183 1.3e-07 60.8 54 61.1
CBR_g30214 Chara braunii HOM05D003394 ORTHO05D004183 1.3e-07 60.8 66 56.1
arahy.Tifrunner.gnm1.ann1.TFIN41 Arachis hypogaea HOM05D003394 ORTHO05D004183 1.6e-07 60.5 47 72.3
arahy.Tifrunner.gnm1.ann1.V9C9EC Arachis hypogaea HOM05D003394 ORTHO05D004183 1.6e-07 60.5 47 72.3
CSS0040010 Camellia sinensis var. sinensis HOM05D003394 ORTHO05D004183 3.7e-07 59.3 32 90.6
MSTRG.26735 Avicennia marina HOM05D003394 ORTHO05D004183 4.8e-07 58.9 31 96.8
CiPaw.01G277700 Carya illinoinensis HOM05D003394 ORTHO05D004183 4.8e-07 58.9 31 96.8
Ca_02310_v3 Cicer arietinum L. HOM05D003394 ORTHO05D004183 4.8e-07 58.9 32 90.6
Prupe.6G243000 Prunus persica HOM05D003394 ORTHO05D004183 4.8e-07 58.9 31 96.8
Hund20140 Selenicereus undatus HOM05D003394 ORTHO05D004183 4.8e-07 58.9 31 96.8
VMungo0720G1327 Vigna mungo HOM05D003394 ORTHO05D004183 4.8e-07 58.9 31 96.8
Actinidia05277 Actinidia chinensis HOM05D003394 ORTHO05D004183 6.2e-07 58.5 31 93.5
SGA_v2.0_scaffold35G14175 Striga asiatica HOM05D003394 ORTHO05D004183 6.2e-07 58.5 31 93.5
SGA_v2.0_scaffold94G28659 Striga asiatica HOM05D003394 ORTHO05D004183 6.2e-07 58.5 31 93.5
CSS0037704 Camellia sinensis var. sinensis HOM05D003394 ORTHO05D004183 8.1e-07 58.2 31 93.5
HPP92_001029 Vanilla planifolia HOM05D003394 ORTHO05D004183 8.1e-07 58.2 31 96.8
Haze_20669 Corylus avellana HOM05D003394 ORTHO05D004183 1.1e-06 57.8 31 96.8
DCAR_009274 Daucus carota HOM05D003394 ORTHO05D004183 1.1e-06 57.8 34 82.4
Eucgr.G02789 Eucalyptus grandis HOM05D003394 ORTHO05D004183 1.1e-06 57.8 54 57.4
Lj5g0004676 Lotus japonicus HOM05D003394 ORTHO05D004183 1.1e-06 57.8 37 83.8
TAR636G1733 Trochodendron aralioides HOM05D003394 ORTHO05D004183 1.1e-06 57.8 59 59.3
Lalb_Chr02g0153591 Lupinus albus HOM05D003394 ORTHO05D004183 1.4e-06 57.4 31 90.3
Lalb_Chr25g0288441 Lupinus albus HOM05D003394 ORTHO05D004183 1.4e-06 57.4 31 90.3
Sc01g0003650 Simmondsia chinensis HOM05D003394 ORTHO05D004183 1.4e-06 57.4 31 90.3
THA.LOC104799363 Tarenaya hassleriana HOM05D003394 ORTHO05D004183 1.4e-06 57.4 31 90.3
MELO3C011721.2 Cucumis melo HOM05D003394 ORTHO05D004183 1.8e-06 57.0 31 90.3
Aqoxy4G03149 Aquilegia oxysepala HOM05D003394 ORTHO05D004183 2.4e-06 56.6 59 57.6
CDE02G0377 Ceratophyllum demersum HOM05D003394 ORTHO05D004183 2.4e-06 56.6 59 57.6
Medtr1g067020 Medicago truncatula HOM05D003394 ORTHO05D004183 2.4e-06 56.6 36 86.1
EL10Ac7g17330 Beta vulgaris HOM05D003394 ORTHO05D004183 3.1e-06 56.2 31 90.3
vmacro07093 Vaccinium macrocarpon HOM05D003394 ORTHO05D004183 3.1e-06 56.2 31 90.3
Ah.08g211990 Amaranthus hybridus HOM05D003394 ORTHO05D004183 4.0e-06 55.8 31 90.3
Sed0009252 Sechium edule HOM05D003394 ORTHO05D004183 4.0e-06 55.8 35 85.7
Haze_16950 Corylus avellana HOM05D003394 ORTHO05D004183 5.3e-06 55.5 31 87.1
Duzib128G0237 Durio zibethinus HOM05D003394 ORTHO05D004183 5.3e-06 55.5 59 55.9
TAR633G2643 Trochodendron aralioides HOM05D003394 ORTHO05D004183 5.3e-06 55.5 31 90.3
Psat0ss6317g0120 Pisum sativum HOM05D003394 ORTHO05D004183 6.9e-06 55.1 35 85.7
TPR.G35662 Trifolium pratense HOM05D003394 ORTHO05D004183 6.9e-06 55.1 35 85.7
CDE09G0715 Ceratophyllum demersum HOM05D003394 ORTHO05D004183 9.0e-06 54.7 31 87.1
ClCG02G013800 Citrullus lanatus HOM05D003394 ORTHO05D004183 9.0e-06 54.7 31 87.1
Solyc09g007230.3 Solanum lycopersicum HOM05D003394 ORTHO05D004183 9.0e-06 54.7 57 56.1
Sopen09g002100 Solanum pennellii HOM05D003394 ORTHO05D004183 9.0e-06 54.7 57 56.1


User provided reference genes

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