Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-170 603.2 408 100.0
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 1.5e-90 337.4 417 58.5
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 2.0e-42 177.6 408 38.0
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 3.2e-40 170.2 407 36.1
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 6.6e-38 162.5 409 38.6
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 9.6e-37 158.7 443 35.4
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 2.4e-35 154.1 403 36.0
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 5.3e-35 152.9 422 34.4
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.2e-34 151.8 423 35.5
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.2e-33 147.5 416 35.3
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.8e-33 146.7 416 34.6
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 3.8e-33 146.7 426 36.6
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 2.1e-31 141.0 403 34.5
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 3.5e-31 140.2 404 32.4
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.3e-30 138.3 430 33.0
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.8e-30 137.9 429 36.1
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 8.7e-30 135.6 427 33.0
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 8.7e-30 135.6 425 31.5
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.1e-29 135.2 415 32.8
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.1e-29 135.2 407 31.9
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 1.1e-29 135.2 410 34.9
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.5e-29 134.8 407 31.9
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.5e-29 134.8 415 32.3
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.9e-29 134.4 427 35.8
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 2.5e-29 134.0 391 33.2
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.3e-29 133.7 428 32.7
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 4.3e-29 133.3 420 32.1
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 7.4e-29 132.5 407 31.7
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.3e-28 131.7 433 31.6
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.3e-28 131.7 392 32.7
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.8e-28 130.6 428 31.8
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.1e-27 128.6 445 32.6
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 3.1e-27 127.1 405 32.3
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.5e-26 124.8 422 31.8
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.5e-26 124.8 441 29.7
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 2.6e-26 124.0 396 37.9
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 5.8e-26 122.9 424 31.1
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.3e-25 121.7 391 32.2
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.3e-25 121.7 433 31.6
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.9e-25 120.6 428 30.8
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 6.5e-25 119.4 414 30.9
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 8.4e-25 119.0 387 30.7
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 1.1e-24 118.6 401 30.9
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 1.4e-24 118.2 406 35.2
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.4e-24 118.2 431 30.4
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 1.4e-24 118.2 426 31.0
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 9.3e-24 115.5 433 33.5
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.6e-23 114.8 124 57.3
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.1e-23 114.4 420 30.5
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 4.6e-23 113.2 411 31.1
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 1.0e-22 112.1 391 31.5
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.3e-22 111.7 434 29.3
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 1.3e-22 111.7 438 33.1
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 1.3e-22 111.7 430 32.6
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 2.3e-22 110.9 147 51.0
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.3e-22 110.9 427 30.4
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 5.1e-22 109.8 430 32.6
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 6.7e-22 109.4 430 32.6
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.1e-21 108.6 429 32.4
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.1e-21 108.6 435 30.6
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.5e-21 108.2 416 30.0
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 3.3e-21 107.1 405 30.4
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 7.4e-21 105.9 153 45.1
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.6e-20 104.8 406 30.3
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.1e-20 104.4 427 30.2
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.4e-19 101.7 147 46.3
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.8e-19 101.3 435 28.0
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.8e-19 101.3 443 29.6
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 6.9e-19 99.4 402 30.3
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 2.0e-18 97.8 421 33.5
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 2.0e-18 97.8 421 29.7
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.6e-18 97.4 394 34.3
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 4.5e-18 96.7 403 28.3
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.3e-17 95.1 402 29.4
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 2.2e-17 94.4 418 28.5
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.2e-17 94.4 417 30.0
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 2.9e-17 94.0 319 31.0
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 2.9e-17 94.0 319 31.0
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.4e-16 91.7 439 27.3
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-16 90.9 319 31.0
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 2.5e-16 90.9 319 31.0
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 3.2e-16 90.5 398 30.7
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 5.5e-16 89.7 320 31.2
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 7.1e-16 89.4 319 30.7
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 7.1e-16 89.4 319 30.7
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.2e-15 88.6 395 27.3
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.6e-15 88.2 411 29.2
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.7e-15 87.4 407 29.2
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.7e-15 87.4 398 32.2
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.7e-15 87.4 394 31.5
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 4.6e-15 86.7 395 27.1
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 4.6e-15 86.7 395 27.1
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 4.6e-15 86.7 162 41.4
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 7.9e-15 85.9 438 26.3
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 7.9e-15 85.9 391 27.4
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.3e-14 85.1 396 31.1
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 1.3e-14 85.1 400 26.5
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.3e-14 85.1 335 30.1
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.8e-14 84.7 397 29.7
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 3.9e-14 83.6 187 39.0
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 8.7e-14 82.4 398 30.9
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.1e-13 82.0 390 26.4
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.5e-13 81.6 372 27.4
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.5e-13 81.6 393 30.5
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.9e-13 81.3 130 46.2
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.9e-13 81.3 412 32.0
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 2.5e-13 80.9 390 30.8
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 4.3e-13 80.1 88 53.4
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 5.7e-13 79.7 406 30.0
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 5.7e-13 79.7 406 30.0
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 7.4e-13 79.3 394 28.4
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 7.4e-13 79.3 184 39.1
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 7.4e-13 79.3 411 30.4
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 9.7e-13 79.0 141 45.4
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 9.7e-13 79.0 390 28.5
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 9.7e-13 79.0 416 26.2
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-12 78.2 184 39.1
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 1.6e-12 78.2 84 60.7
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 2.2e-12 77.8 94 53.2
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.2e-12 77.8 396 27.0
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 2.8e-12 77.4 405 32.6
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 2.8e-12 77.4 142 43.7
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 6.3e-12 76.3 141 39.0
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 8.2e-12 75.9 406 30.3
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.1e-11 75.5 82 56.1
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.1e-11 75.5 184 38.6
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.4e-11 74.3 155 41.3
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 3.1e-11 73.9 413 26.4
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 4.1e-11 73.6 389 32.4
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 9.0e-11 72.4 409 28.4
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.2e-10 72.0 96 49.0
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 2.0e-10 71.2 153 36.6
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 2.6e-10 70.9 448 26.6
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 2.6e-10 70.9 145 44.8
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 3.4e-10 70.5 124 44.4
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.0e-09 68.9 405 27.4
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.0e-09 68.9 407 27.8
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 1.3e-09 68.6 157 42.7
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.7e-09 68.2 406 29.3
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.1e-08 65.5 157 39.5
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.2e-08 63.9 86 51.2
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 5.5e-08 63.2 124 39.5
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 7.2e-08 62.8 86 50.0
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.2e-07 62.0 84 50.0
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.2e-07 62.0 142 34.5
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 6.1e-07 59.7 166 31.3
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 6.1e-07 59.7 82 48.8
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 2.3e-06 57.8 141 33.3
Nitab4.5_0006156g0060 Nicotiana tabacum HOM05D004499 ORTHO05D004928 3.0e-06 57.4 73 50.7
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 3.0e-06 57.4 396 27.8
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 3.0e-06 57.4 76 43.4


User provided reference genes

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