Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.1e-213 746.5 428 100.0
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.1e-58 230.7 322 48.1
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.1e-56 224.9 334 44.3
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 2.5e-51 207.2 218 56.4
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 5.1e-49 199.5 378 41.5
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.4e-46 191.4 327 41.6
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.9e-43 181.0 379 37.5
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.8e-41 174.5 449 35.0
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 2.3e-41 174.1 336 39.6
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 6.7e-41 172.6 356 39.6
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 7.4e-40 169.1 404 35.1
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 2.2e-39 167.5 357 37.5
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 8.2e-39 165.6 369 37.7
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.1e-38 165.2 144 61.8
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.4e-38 164.9 319 38.6
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.4e-38 164.1 253 43.1
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 7.7e-37 159.1 319 37.6
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.1e-35 155.2 323 37.2
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.5e-35 154.1 282 40.1
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.5e-35 154.1 227 45.4
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 5.5e-35 152.9 292 40.1
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.2e-34 151.8 223 44.4
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.2e-34 151.8 354 35.3
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.2e-34 151.8 314 36.9
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.6e-34 151.4 347 35.7
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 2.1e-34 151.0 307 34.9
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.7e-34 149.8 230 41.3
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.0e-34 149.1 163 51.5
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.0e-33 148.7 249 43.0
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.8e-33 147.9 338 33.7
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.0e-33 147.1 316 37.7
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 3.0e-33 147.1 271 42.1
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.2e-33 146.4 320 33.8
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 5.2e-33 146.4 316 37.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 5.2e-33 146.4 352 34.1
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 8.8e-33 145.6 185 48.1
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 8.8e-33 145.6 321 35.2
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.2e-32 145.2 319 36.1
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.0e-32 144.4 176 51.7
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 2.0e-32 144.4 318 38.4
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.3e-31 141.7 301 35.9
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.2e-31 141.0 317 34.7
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.8e-31 140.6 308 34.7
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 6.3e-31 139.4 141 51.1
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 6.3e-31 139.4 138 49.3
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.3e-31 139.4 319 34.2
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.4e-30 138.3 145 49.0
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.8e-30 137.9 334 35.9
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 7.0e-30 136.0 329 35.0
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.0e-30 136.0 179 46.4
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 9.1e-30 135.6 135 51.9
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 9.1e-30 135.6 135 51.9
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.1e-30 135.6 308 35.4
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 9.1e-30 135.6 269 37.9
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.7e-29 134.0 139 49.6
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.7e-29 134.0 391 30.9
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 4.5e-29 133.3 143 47.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 4.5e-29 133.3 303 34.0
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 5.9e-29 132.9 143 51.0
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.0e-28 132.1 235 38.7
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.3e-28 131.7 215 42.8
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.7e-28 131.3 332 35.2
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.7e-28 131.3 174 44.8
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.7e-28 131.3 336 36.6
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.2e-28 131.0 144 48.6
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.0e-28 129.8 320 34.4
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 6.5e-28 129.4 141 50.4
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 8.5e-28 129.0 316 33.2
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.5e-27 128.3 259 36.3
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.9e-27 127.9 346 33.8
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.5e-27 127.5 316 34.2
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.5e-27 127.5 177 43.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 4.2e-27 126.7 315 34.9
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 5.5e-27 126.3 233 37.8
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 5.5e-27 126.3 233 37.8
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 5.5e-27 126.3 327 34.9
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 5.5e-27 126.3 366 32.0
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 9.4e-27 125.6 141 46.1
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 9.4e-27 125.6 182 47.8
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.6e-26 124.8 337 33.2
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.6e-26 124.8 310 33.5
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.7e-26 124.0 324 37.0
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 3.6e-26 123.6 127 50.4
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 8.0e-26 122.5 219 38.8
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 8.0e-26 122.5 280 36.1
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.0e-25 122.1 326 35.9
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.0e-25 122.1 317 33.8
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.0e-25 120.2 306 34.3
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 8.8e-25 119.0 308 31.2
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 8.8e-25 119.0 232 40.5
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.2e-24 118.6 342 33.0
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.2e-24 118.6 323 33.1
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.5e-24 118.2 359 30.9
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.0e-24 117.9 355 31.3
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.0e-24 117.9 380 31.1
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 3.4e-24 117.1 307 34.9
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 3.4e-24 117.1 347 32.3
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.4e-24 117.1 338 33.4
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 4.4e-24 116.7 357 33.9
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 5.7e-24 116.3 170 45.3
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 9.8e-24 115.5 340 32.1
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 4.9e-23 113.2 94 54.3
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 4.9e-23 113.2 235 37.4
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 6.3e-23 112.8 141 44.0
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 6.3e-23 112.8 207 38.2
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 4.1e-22 110.2 202 36.1
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 4.1e-22 110.2 330 30.9
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 5.4e-22 109.8 102 51.0
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 7.7e-21 105.9 283 33.9
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 7.7e-21 105.9 309 31.7
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.0e-20 105.5 240 35.8
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.3e-20 105.1 277 35.7
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.9e-20 104.0 328 31.7
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.9e-20 104.0 173 37.6
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.8e-20 103.6 85 52.9
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.8e-20 103.6 85 52.9
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 6.6e-20 102.8 125 39.2
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.2e-19 100.1 233 35.2
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 7.2e-19 99.4 116 52.6
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 3.6e-18 97.1 266 32.0
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.2e-16 92.0 317 30.6
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 4.4e-16 90.1 234 32.5
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.4e-16 90.1 253 32.8
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 7.5e-16 89.4 266 30.8
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 2.9e-15 87.4 355 29.6
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.9e-15 87.4 82 50.0
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.3e-15 85.9 87 48.3
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.1e-14 85.5 150 40.7
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.8e-14 84.7 241 30.7
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.4e-14 84.3 220 29.1
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 7.0e-14 82.8 317 29.3
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 2.0e-13 81.3 245 27.8
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.0e-12 79.0 267 30.7
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.3e-12 77.8 86 43.0
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 5.0e-12 76.6 271 29.9
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 5.0e-12 76.6 276 27.2
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 6.6e-12 76.3 82 42.7
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 8.6e-12 75.9 61 57.4
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.3e-11 73.6 145 33.8
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.6e-11 73.2 89 44.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.6e-10 71.6 62 53.2
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 2.8e-10 70.9 80 48.8
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 5.2e-09 66.6 138 33.3
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 1.2e-08 65.5 62 50.0
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.2e-08 65.5 205 29.3
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.0e-08 64.7 201 29.9
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 9.8e-08 62.4 136 28.7
Lj4A466T15 Lonicera japonica HOM05D004112 ORTHO05D004739 4.1e-06 57.0 109 40.4


User provided reference genes

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