Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 8.3e-154 547.0 270 100.0
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 1.9e-129 466.1 277 84.1
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 1.9e-118 429.5 267 77.5
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 2.9e-114 415.6 253 77.5
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 3.2e-113 412.1 249 77.9
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 4.6e-112 408.3 267 72.3
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 1.1e-110 403.7 270 70.7
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.5e-110 403.3 258 74.4
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.5e-110 403.3 268 71.6
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 1.6e-109 399.8 268 70.1
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 4.8e-109 398.3 260 71.5
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 6.2e-109 397.9 259 73.4
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.8e-108 396.4 254 72.8
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 2.4e-108 396.0 265 69.4
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 5.3e-108 394.8 249 73.1
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.8e-107 391.3 270 69.3
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 5.8e-107 391.3 252 72.6
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 7.6e-107 391.0 263 71.9
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 1.3e-106 390.2 270 69.3
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 2.9e-106 389.0 250 73.2
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 3.8e-106 388.7 260 70.0
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 1.1e-105 387.1 253 73.5
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.4e-105 386.7 253 71.1
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 1.9e-105 386.3 257 71.2
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 2.4e-105 386.0 246 73.2
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 3.2e-105 385.6 254 72.4
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.2e-105 385.6 270 68.5
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 3.2e-105 385.6 259 71.4
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 4.2e-105 385.2 257 71.2
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 7.1e-105 384.4 249 71.1
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.2e-104 383.6 260 67.7
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 1.0e-103 380.6 262 68.7
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 5.1e-103 378.3 255 70.2
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 8.7e-103 377.5 267 69.7
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.1e-102 377.1 267 67.0
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 1.1e-102 377.1 292 63.0
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.9e-102 376.3 261 68.6
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.9e-102 376.3 261 68.2
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 9.6e-102 374.0 254 69.7
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 9.6e-102 374.0 254 68.9
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 2.1e-101 372.9 245 72.7
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.8e-101 372.5 261 67.8
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.8e-101 372.5 261 67.4
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 3.7e-101 372.1 254 67.7
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 8.1e-101 370.9 224 76.3
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 1.1e-100 370.5 246 72.0
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 1.8e-100 369.8 254 68.9
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 1.8e-100 369.8 261 67.4
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 2.0e-99 366.3 248 68.1
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 3.4e-99 365.5 254 67.7
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 3.4e-99 365.5 254 67.7
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 3.4e-99 365.5 263 65.0
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 4.5e-99 365.2 249 69.1
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 7.6e-99 364.4 254 66.1
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.7e-98 363.2 289 62.3
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 3.8e-98 362.1 254 66.9
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 6.5e-98 361.3 255 65.5
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 8.4e-98 360.9 246 66.7
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 3.2e-97 359.0 276 62.3
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 4.2e-97 358.6 264 64.0
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 4.2e-97 358.6 248 67.3
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 9.3e-97 357.5 257 66.1
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.7e-96 355.9 254 65.7
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 3.5e-96 355.5 252 66.3
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 5.1e-95 351.7 316 56.3
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 5.1e-95 351.7 246 65.4
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 5.1e-95 351.7 248 65.3
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 6.7e-95 351.3 244 66.0
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 3.3e-94 349.0 247 62.8
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 5.7e-94 348.2 255 63.5
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 9.6e-94 347.4 232 69.4
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 1.3e-93 347.1 229 70.3
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 2.1e-93 346.3 254 61.0
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 4.8e-93 345.1 245 64.9
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 4.8e-93 345.1 244 64.3
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 6.2e-93 344.7 252 62.7
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 6.2e-93 344.7 244 64.3
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 8.2e-93 344.4 255 63.5
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 1.1e-92 344.0 244 64.8
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 5.3e-92 341.7 248 62.1
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 5.3e-92 341.7 247 61.5
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 6.9e-92 341.3 243 65.4
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 9.0e-92 340.9 255 60.8
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 1.2e-91 340.5 262 58.8
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 2.6e-91 339.3 244 68.0
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 5.8e-91 338.2 254 59.1
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 1.0e-90 337.4 262 58.0
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 1.0e-90 337.4 251 60.2
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.3e-90 337.0 269 59.5
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.3e-90 337.0 269 59.5
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 5.0e-90 335.1 254 57.5
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 5.0e-90 335.1 253 60.1
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 6.5e-90 334.7 270 56.7
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 8.4e-90 334.3 251 59.8
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 8.4e-90 334.3 251 59.8
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 1.4e-89 333.6 254 59.8
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 4.2e-89 332.0 255 59.2
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 9.3e-89 330.9 254 59.8
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 2.1e-88 329.7 251 61.8
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 3.5e-88 328.9 255 58.0
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 2.3e-87 326.2 247 59.5
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 5.1e-87 325.1 254 59.1
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 1.1e-86 323.9 247 58.7
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 1.5e-86 323.6 259 59.1
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 1.9e-86 323.2 247 58.7
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 3.3e-86 322.4 247 58.7
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.1e-84 317.4 254 60.2
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 3.8e-82 308.9 199 71.9
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 5.0e-82 308.5 199 70.9
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 8.5e-82 307.8 199 70.4
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 3.2e-81 305.8 218 64.2
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 2.7e-80 302.8 278 51.4
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 3.3e-78 295.8 184 73.9
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 2.2e-77 293.1 168 79.2
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 6.9e-76 288.1 188 67.6
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 2.6e-75 286.2 228 56.6
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.6e-72 275.8 254 53.5
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 7.9e-72 274.6 241 56.4
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.0e-70 270.0 225 55.6
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 2.0e-70 270.0 262 50.8
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.8e-68 263.5 245 52.7
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.2e-67 260.8 221 52.9
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.9e-66 256.1 181 63.0
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 9.4e-65 251.1 193 59.6
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.7e-61 240.4 249 49.4
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 6.3e-61 238.4 170 62.4
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 1.8e-55 220.3 128 76.6
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 1.5e-54 217.2 210 47.1
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 6.3e-53 211.8 209 49.8
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 4.1e-52 209.1 130 76.2
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 2.0e-51 206.8 263 45.2
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 3.2e-49 199.5 138 65.9
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 7.2e-49 198.4 126 74.6
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.7e-48 196.4 292 41.4
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 4.9e-45 185.7 194 53.1
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.6e-43 180.6 222 41.0
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.0e-42 177.9 112 73.2
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 8.6e-42 174.9 268 36.9
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.1e-41 174.5 138 58.7
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 9.5e-41 171.4 129 58.9
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 3.7e-37 159.5 114 64.0
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.1e-28 131.3 112 58.0
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 7.0e-28 128.6 79 73.4
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 1.8e-23 114.0 64 78.1
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 5.4e-20 102.4 105 45.7
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 2.5e-17 93.6 60 73.3
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 7.1e-12 75.5 68 52.9
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 4.7e-08 62.8 186 24.7


User provided reference genes

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