Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 1.5e-194 683.3 549 100.0
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 3.5e-82 310.1 521 56.0
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 4.7e-79 299.7 512 56.2
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 7.7e-74 282.3 559 56.9
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 1.4e-70 271.6 510 59.4
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.0e-70 270.4 563 59.3
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 3.4e-69 266.9 560 55.7
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 4.4e-69 266.5 566 59.0
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 4.4e-69 266.5 561 53.3
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 4.4e-69 266.5 561 58.5
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 7.5e-69 265.8 561 52.9
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 1.4e-67 261.5 346 71.7
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 4.6e-66 256.5 494 66.4
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 7.8e-66 255.8 567 57.8
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 7.8e-66 255.8 561 58.3
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.3e-65 255.0 563 61.5
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.3e-65 255.0 512 61.1
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 2.3e-65 254.2 565 58.2
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.0e-62 245.4 511 55.8
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 1.5e-61 241.5 450 62.9
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 2.6e-61 240.7 569 55.7
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 1.3e-60 238.4 346 67.3
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 4.1e-59 233.4 345 75.9
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 2.7e-58 230.7 513 35.3
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 2.3e-57 227.6 337 72.4
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 4.3e-56 223.4 568 57.4
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 4.7e-55 219.9 414 58.5
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 5.2e-54 216.5 346 76.0
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 5.8e-53 213.0 571 55.2
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 5.8e-53 213.0 346 75.4
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 7.5e-53 212.6 346 69.9
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 3.7e-52 210.3 506 54.3
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 1.1e-51 208.8 346 74.9
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 1.4e-51 208.4 346 66.5
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.9e-51 208.0 346 65.9
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 2.4e-51 207.6 547 51.9
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 3.2e-51 207.2 346 65.9
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 7.1e-51 206.1 346 72.5
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 1.6e-50 204.9 568 51.9
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 4.6e-50 203.4 346 50.0
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 2.3e-49 201.1 496 63.3
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 7.3e-48 196.1 346 72.3
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.2e-47 195.3 450 53.1
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 2.8e-47 194.1 497 62.2
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 6.2e-47 193.0 346 63.9
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 2.3e-46 191.0 450 53.8
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 1.7e-44 184.9 510 53.9
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 2.9e-44 184.1 481 51.4
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.2e-42 178.7 224 43.3
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 1.2e-42 178.7 575 54.6
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 1.6e-42 178.3 570 56.0
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 1.5e-40 171.8 567 53.8
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 4.3e-40 170.2 345 68.7
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 9.9e-37 159.1 346 69.4
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 1.7e-36 158.3 582 46.4
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 8.4e-36 156.0 346 69.7
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 1.9e-35 154.8 131 55.7
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 2.4e-35 154.5 346 68.8
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 2.1e-34 151.4 480 49.6
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 6.0e-34 149.8 480 37.5
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 9.6e-32 142.5 575 45.6
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 3.6e-31 140.6 344 66.0
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 3.6e-31 140.6 109 58.7
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 1.4e-30 138.7 579 44.9
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 2.4e-30 137.9 505 48.1
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 2.6e-29 134.4 516 47.9
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 3.4e-29 134.0 580 48.1
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 9.9e-29 132.5 128 47.7
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.1e-27 129.0 502 47.4
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 1.4e-27 128.6 573 47.3
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 4.2e-27 127.1 564 38.7
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 5.4e-27 126.7 482 29.3
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 9.3e-27 125.9 131 48.1
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 6.0e-26 123.2 550 33.6
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 1.5e-24 118.6 497 27.6
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 1.5e-24 118.6 497 27.6
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 2.5e-24 117.9 130 41.5
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 2.8e-23 114.4 498 24.1
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 1.4e-22 112.1 205 34.6
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 9.0e-22 109.4 483 22.2
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 2.6e-21 107.8 480 40.2
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 2.6e-21 107.8 225 31.1
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 3.4e-21 107.5 483 21.9
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 5.8e-21 106.7 65 73.8
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 1.1e-19 102.4 483 42.9
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 3.2e-19 100.9 347 46.7
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 7.1e-19 99.8 496 37.9
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 2.1e-18 98.2 346 51.7
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 7.9e-18 96.3 71 60.6
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 8.1e-15 86.3 292 29.8
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 5.7e-08 63.5 173 25.4
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 1.6e-07 62.0 161 26.1
Sp5g29730 Schrenkiella parvula HOM05D002453 ORTHO05D002107 2.1e-07 61.6 175 24.0
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 2.1e-07 61.6 174 28.2
TPR.G15519 Trifolium pratense HOM05D000001 ORTHO05D000003 1.1e-06 59.3 184 29.9
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.8e-06 58.5 75 41.3
Medtr2g036960 Medicago truncatula HOM05D000001 ORTHO05D000003 4.1e-06 57.4 214 22.4
Ca_02044_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 5.3e-06 57.0 214 22.9
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 6.9e-06 56.6 161 23.6
FvH4_5g24641 Fragaria vesca HOM05D000001 ORTHO05D000003 6.9e-06 56.6 63 38.1
FAN13G1183 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.9e-06 56.6 63 38.1
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 6.9e-06 56.6 161 24.8
CSS0023404 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 9.0e-06 56.2 71 39.4
CSS0041094 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 9.0e-06 56.2 71 39.4
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 9.0e-06 56.2 161 24.2


User provided reference genes

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