Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 6.3e-123 444.1 224 100.0
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.8e-122 442.6 224 99.1
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 8.8e-93 344.0 216 77.8
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.4e-92 341.7 216 78.2
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.7e-91 339.7 216 76.9
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 3.7e-91 338.6 218 78.0
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 1.4e-90 336.7 216 75.5
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 1.8e-90 336.3 216 77.3
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 4.1e-90 335.1 221 76.5
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 7.0e-90 334.3 221 73.3
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 7.0e-90 334.3 224 74.1
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 9.2e-90 334.0 213 76.5
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 3.5e-89 332.0 218 75.7
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 5.9e-89 331.3 220 75.0
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 2.3e-88 329.3 216 72.7
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 2.3e-88 329.3 224 73.7
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 6.6e-88 327.8 216 75.0
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.9e-87 326.2 216 72.7
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 4.3e-87 325.1 216 72.2
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 7.3e-87 324.3 216 71.8
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 7.3e-87 324.3 216 71.8
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.2e-86 323.6 220 73.6
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.6e-86 323.2 224 71.9
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 3.6e-86 322.0 216 73.1
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.0e-85 320.5 223 71.3
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.8e-85 319.7 220 73.2
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.3e-85 319.3 224 71.0
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.3e-85 319.3 216 72.2
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 3.0e-85 318.9 216 73.6
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.0e-85 318.5 216 74.1
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 5.2e-85 318.2 223 72.6
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 6.8e-85 317.8 211 73.0
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.2e-84 317.0 224 70.5
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 2.0e-84 316.2 224 68.8
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 2.6e-84 315.8 215 72.1
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 2.6e-84 315.8 224 68.8
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 4.4e-84 315.1 221 67.4
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 7.5e-84 314.3 224 70.1
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 9.8e-84 313.9 218 72.0
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 9.8e-84 313.9 224 68.3
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.7e-83 313.2 220 71.8
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.7e-83 313.2 216 70.8
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 6.4e-83 311.2 216 71.3
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 9.2e-82 307.4 216 70.8
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.2e-81 307.0 218 69.3
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 3.5e-81 305.4 213 71.4
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 3.5e-81 305.4 219 68.9
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 3.5e-81 305.4 214 65.9
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.6e-81 305.1 216 70.8
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 1.0e-80 303.9 217 69.1
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 1.0e-80 303.9 217 69.1
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.3e-80 303.5 221 71.0
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 1.7e-80 303.1 227 65.6
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.0e-80 301.6 213 70.0
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 6.6e-80 301.2 216 68.1
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 4.3e-79 298.5 211 69.2
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 4.3e-79 298.5 214 65.0
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 5.6e-79 298.1 208 71.6
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 7.3e-79 297.7 222 69.8
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 9.5e-79 297.4 201 75.1
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 9.5e-79 297.4 224 67.9
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 2.8e-78 295.8 213 69.0
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 2.8e-78 295.8 217 68.2
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 8.0e-78 294.3 211 71.1
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 4.0e-77 292.0 217 66.8
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 6.8e-77 291.2 221 65.6
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 6.8e-77 291.2 213 62.4
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 2.6e-76 289.3 219 66.2
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 3.4e-76 288.9 220 66.4
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 4.4e-76 288.5 213 62.9
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 4.4e-76 288.5 219 65.8
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.4e-76 288.5 206 67.0
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 5.8e-76 288.1 220 65.5
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 9.8e-76 287.3 217 66.4
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 1.3e-75 287.0 218 64.2
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.3e-75 287.0 217 67.7
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.7e-75 286.6 224 62.9
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 2.2e-75 286.2 206 68.0
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.2e-75 286.2 217 66.4
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 4.9e-75 285.0 217 65.9
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 4.9e-75 285.0 217 66.4
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.9e-75 285.0 212 64.6
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 6.4e-75 284.6 217 65.4
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 8.3e-75 284.3 218 64.2
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 1.9e-74 283.1 219 64.8
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.9e-74 283.1 217 65.0
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 4.1e-74 282.0 217 65.0
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 4.1e-74 282.0 217 65.0
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.2e-73 280.4 221 64.7
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.6e-73 280.0 226 63.3
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 3.5e-73 278.9 205 64.4
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 4.6e-73 278.5 205 66.3
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.5e-71 272.7 273 54.9
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.3e-71 272.3 200 66.0
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 7.3e-71 271.2 204 67.2
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 9.5e-71 270.8 202 63.9
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 9.5e-71 270.8 202 63.9
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.3e-69 266.2 183 73.2
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 8.9e-69 264.2 212 58.5
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.0e-68 263.1 203 60.6
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 1.7e-67 260.0 183 71.0
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 6.4e-67 258.1 200 62.0
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 5.4e-66 255.0 203 65.5
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 1.6e-65 253.4 184 71.2
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 2.1e-65 253.1 213 60.6
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.1e-65 253.1 167 74.3
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 2.7e-65 252.7 211 60.2
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.7e-64 250.0 219 60.7
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-63 247.3 217 59.4
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 1.1e-63 247.3 209 57.4
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.5e-63 246.9 171 71.9
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 2.1e-62 243.0 200 64.0
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 2.1e-62 243.0 183 66.7
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.4e-61 240.4 171 70.8
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.8e-61 240.0 217 58.5
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 2.3e-61 239.6 150 78.0
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 8.4e-59 231.1 150 77.3
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 1.4e-58 230.3 157 70.1
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 7.1e-58 228.0 216 57.9
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 9.2e-58 227.6 211 54.5
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.2e-57 227.3 215 54.4
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.1e-57 226.5 210 52.4
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.7e-57 226.1 171 60.8
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 4.6e-57 225.3 161 69.6
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 4.6e-57 225.3 212 54.7
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 7.8e-57 224.6 217 50.2
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 1.6e-54 216.9 216 55.6
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 4.7e-54 215.3 191 60.7
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 8.9e-53 211.1 212 49.1
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 2.2e-51 206.5 201 49.3
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 8.4e-51 204.5 210 51.0
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 4.2e-50 202.2 200 47.5
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 3.5e-49 199.1 222 52.3
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 5.8e-44 181.8 222 49.1
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 5.8e-44 181.8 164 50.6
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 4.9e-43 178.7 206 42.7
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 5.1e-40 168.7 157 56.7
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 3.3e-39 166.0 95 83.2
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 7.4e-39 164.9 126 69.0
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.8e-38 162.2 202 46.5
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 4.8e-38 162.2 200 40.5
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 8.1e-38 161.4 103 79.6
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.4e-37 160.6 202 45.0
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 2.4e-34 149.8 206 41.3
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 3.5e-33 146.0 202 39.6
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 7.9e-33 144.8 96 70.8
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 9.6e-31 137.9 208 47.1
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.2e-28 131.0 185 43.8
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 2.6e-28 129.8 203 36.9
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 7.6e-28 128.3 203 36.9
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 8.4e-27 124.8 127 48.0
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.2e-26 122.5 175 43.4
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.1e-25 120.2 91 67.0
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.1e-23 114.4 88 60.2
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 1.1e-15 87.8 51 82.4
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 3.7e-14 82.8 78 60.3
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 7.7e-12 75.1 85 45.9
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 3.6e-09 66.2 48 66.7
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 7.9e-09 65.1 43 67.4


User provided reference genes

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