Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu058199.2 Olea europaea HOM05D001471 ORTHO05D001325 1.1e-30 136.0 69 100.0
Cfa015031 Carpinus fangiana HOM05D001471 ORTHO05D001325 6.6e-23 110.2 67 76.1
Manes.17G084700 Manihot esculenta HOM05D001471 ORTHO05D001325 8.6e-23 109.8 69 73.9
QL03p036155 Quercus lobata HOM05D001471 ORTHO05D001325 8.6e-23 109.8 67 76.1
Haze_10866 Corylus avellana HOM05D001471 ORTHO05D001325 1.1e-22 109.4 67 76.1
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.5e-22 109.0 67 74.6
Manes.17G084777 Manihot esculenta HOM05D001471 ORTHO05D001325 1.9e-22 108.6 69 73.9
Actinidia38432 Actinidia chinensis HOM05D001471 ORTHO05D001325 2.5e-22 108.2 69 72.5
Actinidia34051 Actinidia chinensis HOM05D001471 ORTHO05D001325 3.3e-22 107.8 68 72.1
Oeu024533.1 Olea europaea HOM05D001471 ORTHO05D001325 3.3e-22 107.8 68 76.5
Lsat_1_v5_gn_4_24681 Lactuca sativa HOM05D001471 ORTHO05D001325 5.6e-22 107.1 69 73.9
Atru.chr11.907 Acer truncatum HOM05D001471 ORTHO05D001325 7.3e-22 106.7 68 72.1
MSTRG.13630 Avicennia marina HOM05D001471 ORTHO05D001325 7.3e-22 106.7 69 71.0
FvH4_4g33460 Fragaria vesca HOM05D001471 ORTHO05D001325 9.6e-22 106.3 69 71.0
FAN12G3380 Fragaria x ananassa HOM05D001471 ORTHO05D001325 9.6e-22 106.3 69 71.0
FAN17G0340 Fragaria x ananassa HOM05D001471 ORTHO05D001325 9.6e-22 106.3 69 71.0
FAN22G0021 Fragaria x ananassa HOM05D001471 ORTHO05D001325 9.6e-22 106.3 69 71.0
FAN07G0242 Fragaria x ananassa HOM05D001471 ORTHO05D001325 1.6e-21 105.5 69 71.0
FAN07G1372 Fragaria x ananassa HOM05D001471 ORTHO05D001325 1.6e-21 105.5 69 71.0
Migut.E00490 Erythranthe guttata HOM05D001471 ORTHO05D001325 2.1e-21 105.1 67 73.1
CSS0008028 Camellia sinensis var. sinensis HOM05D001471 ORTHO05D001325 2.8e-21 104.8 69 68.1
Dinv26355 Davidia involucrata HOM05D001471 ORTHO05D001325 2.8e-21 104.8 69 69.6
Dinv26385 Davidia involucrata HOM05D001471 ORTHO05D001325 2.8e-21 104.8 69 69.6
Cpa.g.sc2.185 Carica papaya HOM05D001471 ORTHO05D001325 3.6e-21 104.4 67 73.1
Lalb_Chr04g0258721 Lupinus albus HOM05D001471 ORTHO05D001325 6.2e-21 103.6 68 70.6
MD13G1019700 Malus domestica HOM05D001471 ORTHO05D001325 8.1e-21 103.2 69 68.1
ClCG07G005490 Citrullus lanatus HOM05D001471 ORTHO05D001325 1.1e-20 102.8 67 73.1
Dinv18905 Davidia involucrata HOM05D001471 ORTHO05D001325 1.1e-20 102.8 65 73.8
Phvul.003G016900 Phaseolus vulgaris HOM05D001471 ORTHO05D001325 1.4e-20 102.4 68 72.1
Psat6g051680 Pisum sativum HOM05D001471 ORTHO05D001325 1.4e-20 102.4 68 67.6
TWI74G0097 Tripterygium wilfordii HOM05D001471 ORTHO05D001325 1.4e-20 102.4 63 74.6
HanXRQChr16g0527331 Helianthus annuus HOM05D001471 ORTHO05D001325 1.8e-20 102.1 69 68.1
RcHm_v2.0_Chr4g0442771 Rosa chinensis HOM05D001471 ORTHO05D001325 1.8e-20 102.1 69 66.7
CiPaw.06G053300 Carya illinoinensis HOM05D001471 ORTHO05D001325 3.1e-20 101.3 67 73.1
Lj2g0009818 Lotus japonicus HOM05D001471 ORTHO05D001325 3.1e-20 101.3 68 70.6
arahy.Tifrunner.gnm1.ann1.D9VVXL Arachis hypogaea HOM05D001471 ORTHO05D001325 4.0e-20 100.9 64 73.4
arahy.Tifrunner.gnm1.ann1.LXT1CN Arachis hypogaea HOM05D001471 ORTHO05D001325 4.0e-20 100.9 64 73.4
Ciclev10016393m.g Citrus clementina HOM05D001471 ORTHO05D001325 4.0e-20 100.9 68 67.6
Hma1.2p1_0277F.1_g111590 Hydrangea macrophylla HOM05D001471 ORTHO05D001325 4.0e-20 100.9 68 70.6
SalBow2G2179 Salvia bowleyana HOM05D001471 ORTHO05D001325 4.0e-20 100.9 67 73.1
CsaV3_5G014400 Cucumis sativus L. HOM05D001471 ORTHO05D001325 6.9e-20 100.1 66 71.2
HanXRQChr17g0566411 Helianthus annuus HOM05D001471 ORTHO05D001325 6.9e-20 100.1 69 68.1
Prupe.1G334300 Prunus persica HOM05D001471 ORTHO05D001325 6.9e-20 100.1 69 68.1
Eucgr.B02680 Eucalyptus grandis HOM05D001471 ORTHO05D001325 8.9e-20 99.8 69 68.1
Eucgr.L02625 Eucalyptus grandis HOM05D001471 ORTHO05D001325 8.9e-20 99.8 69 68.1
TAR622G1183 Trochodendron aralioides HOM05D001471 ORTHO05D001325 8.9e-20 99.8 64 67.2
Sed0021426 Sechium edule HOM05D001471 ORTHO05D001325 1.2e-19 99.4 67 67.2
ECA234G1040 Erigeron canadensis HOM05D001471 ORTHO05D001325 1.5e-19 99.0 68 67.6
Manes.15G135200 Manihot esculenta HOM05D001471 ORTHO05D001325 1.5e-19 99.0 69 65.2
Manes.15G135300 Manihot esculenta HOM05D001471 ORTHO05D001325 1.5e-19 99.0 67 65.7
SGA_v2.0_scaffold23G10183 Striga asiatica HOM05D001471 ORTHO05D001325 1.5e-19 99.0 67 65.7
unitig_27.g25308 Utricularia gibba HOM05D001471 ORTHO05D001325 1.5e-19 99.0 66 66.7
Cc11_g07740 Coffea canephora HOM05D001471 ORTHO05D001325 2.0e-19 98.6 67 67.2
MELO3C016667.2 Cucumis melo HOM05D001471 ORTHO05D001325 2.0e-19 98.6 66 69.7
Eucgr.B02677 Eucalyptus grandis HOM05D001471 ORTHO05D001325 2.0e-19 98.6 69 68.1
Peaxi162Scf00655g00009 Petunia axillaris HOM05D001471 ORTHO05D001325 2.0e-19 98.6 63 71.4
CANSAT78G0182 Cannabis sativa HOM05D001471 ORTHO05D001325 2.6e-19 98.2 69 68.1
VMungo1215G2250 Vigna mungo HOM05D001471 ORTHO05D001325 2.6e-19 98.2 60 75.0
CAN.G282.121 Capsicum annuum HOM05D001471 ORTHO05D001325 4.4e-19 97.4 63 71.4
SalBow2G2975 Salvia bowleyana HOM05D001471 ORTHO05D001325 4.4e-19 97.4 65 72.3
CANSAT78G1894 Cannabis sativa HOM05D001471 ORTHO05D001325 5.8e-19 97.1 69 66.7
Glyma.02G086000 Glycine max HOM05D001471 ORTHO05D001325 5.8e-19 97.1 68 67.6
ECA234G2215 Erigeron canadensis HOM05D001471 ORTHO05D001325 7.6e-19 96.7 69 63.8
Rhsim04G0170400 Rhododendron simsii HOM05D001471 ORTHO05D001325 7.6e-19 96.7 67 67.2
Rhsim04G0170600 Rhododendron simsii HOM05D001471 ORTHO05D001325 7.6e-19 96.7 67 67.2
Cc11_g07760 Coffea canephora HOM05D001471 ORTHO05D001325 9.9e-19 96.3 67 65.7
Duzib251G0147 Durio zibethinus HOM05D001471 ORTHO05D001325 9.9e-19 96.3 67 64.2
vmacro08571 Vaccinium macrocarpon HOM05D001471 ORTHO05D001325 1.3e-18 95.9 69 65.2
Migut.E00491 Erythranthe guttata HOM05D001471 ORTHO05D001325 1.7e-18 95.5 69 62.3
MD16G1017800 Malus domestica HOM05D001471 ORTHO05D001325 2.2e-18 95.1 69 66.7
Potri.008G135600 Populus trichocarpa HOM05D001471 ORTHO05D001325 2.2e-18 95.1 67 65.7
Nitab4.5_0000198g0080 Nicotiana tabacum HOM05D001471 ORTHO05D001325 2.9e-18 94.7 63 69.8
Potri.010G105400 Populus trichocarpa HOM05D001471 ORTHO05D001325 2.9e-18 94.7 67 67.2
Ca_12534_v3 Cicer arietinum L. HOM05D001471 ORTHO05D001325 3.8e-18 94.4 68 63.2
THA.LOC104805086 Tarenaya hassleriana HOM05D001471 ORTHO05D001325 3.8e-18 94.4 65 70.8
Nn3g18394 Nelumbo nucifera HOM05D001471 ORTHO05D001325 4.9e-18 94.0 60 75.0
Sabra08G0103600 Salix brachista HOM05D001471 ORTHO05D001325 4.9e-18 94.0 67 64.2
Solyc01g005257.1 Solanum lycopersicum HOM05D001471 ORTHO05D001325 4.9e-18 94.0 63 68.3
Thecc.02G294800 Theobroma cacao HOM05D001471 ORTHO05D001325 4.9e-18 94.0 67 64.2
GSVIVG01011647001 Vitis vinifera HOM05D001471 ORTHO05D001325 4.9e-18 94.0 60 73.3
TPR.G36972 Trifolium pratense HOM05D001471 ORTHO05D001325 8.4e-18 93.2 68 58.8
CAN.G282.122 Capsicum annuum HOM05D001471 ORTHO05D001325 1.1e-17 92.8 63 68.3
Nitab4.5_0000640g0110 Nicotiana tabacum HOM05D001471 ORTHO05D001325 1.1e-17 92.8 63 68.3
Sopen01g001300 Solanum pennellii HOM05D001471 ORTHO05D001325 1.1e-17 92.8 63 68.3
Peaxi162Scf00275g00021 Petunia axillaris HOM05D001471 ORTHO05D001325 1.4e-17 92.4 63 68.3
ECA234G2449 Erigeron canadensis HOM05D001471 ORTHO05D001325 1.9e-17 92.0 66 63.6
Gohir.A03G115738 Gossypium hirsutum HOM05D001471 ORTHO05D001325 3.2e-17 91.3 67 61.2
Gohir.A03G115776 Gossypium hirsutum HOM05D001471 ORTHO05D001325 3.2e-17 91.3 67 61.2
ClCG07G005510 Citrullus lanatus HOM05D001471 ORTHO05D001325 4.2e-17 90.9 66 68.2
Gohir.D02G139600 Gossypium hirsutum HOM05D001471 ORTHO05D001325 4.2e-17 90.9 67 61.2
Gorai.005G157200 Gossypium raimondii HOM05D001471 ORTHO05D001325 4.2e-17 90.9 67 61.2
Solyc01g005253.1 Solanum lycopersicum HOM05D001471 ORTHO05D001325 7.1e-17 90.1 63 63.5
Sopen01g001290 Solanum pennellii HOM05D001471 ORTHO05D001325 7.1e-17 90.1 63 63.5
PGSC0003DMG401022797 Solanum tuberosum HOM05D001471 ORTHO05D001325 7.1e-17 90.1 63 65.1
Duzib248G0789 Durio zibethinus HOM05D001471 ORTHO05D001325 9.3e-17 89.7 60 66.7
PGSC0003DMG402022797 Solanum tuberosum HOM05D001471 ORTHO05D001325 9.3e-17 89.7 63 65.1
Lsat_1_v5_gn_4_24780 Lactuca sativa HOM05D001471 ORTHO05D001325 1.2e-16 89.4 60 68.3
MBI19_g36738_MAGBIO Magnolia biondii HOM05D001471 ORTHO05D001325 2.1e-16 88.6 71 60.6
Medtr1g032580 Medicago truncatula HOM05D001471 ORTHO05D001325 2.1e-16 88.6 60 65.0
Potri.010G105100 Populus trichocarpa HOM05D001471 ORTHO05D001325 2.7e-16 88.2 67 62.7
DCAR_002676 Daucus carota HOM05D001471 ORTHO05D001325 4.6e-16 87.4 68 51.5
Aa31LG1G280 Aethionema arabicum HOM05D001471 ORTHO05D001325 6.0e-16 87.0 63 65.1
Aqoxy3G00151 Aquilegia oxysepala HOM05D001471 ORTHO05D001325 6.0e-16 87.0 60 63.3
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 1.0e-15 86.3 60 68.3
COL.COLO4_16610 Corchorus olitorius HOM05D001471 ORTHO05D001325 1.0e-15 86.3 60 65.0
MELO3C016666.2 Cucumis melo HOM05D001471 ORTHO05D001325 1.0e-15 86.3 66 62.1
COL.COLO4_16611 Corchorus olitorius HOM05D001471 ORTHO05D001325 1.3e-15 85.9 60 65.0
Sed0011350 Sechium edule HOM05D001471 ORTHO05D001325 1.3e-15 85.9 67 64.2
Aqoxy3G00149 Aquilegia oxysepala HOM05D001471 ORTHO05D001325 1.7e-15 85.5 63 61.9
ECA234G2312 Erigeron canadensis HOM05D001471 ORTHO05D001325 1.7e-15 85.5 60 65.0
AT1G14820 Arabidopsis thaliana HOM05D001471 ORTHO05D001325 2.3e-15 85.1 63 61.9
BcaB08g34414 Brassica carinata HOM05D001471 ORTHO05D001325 2.3e-15 85.1 60 66.7
PSO478G0339 Papaver somniferum HOM05D001471 ORTHO05D001325 2.3e-15 85.1 69 62.3
Sopen01g001310 Solanum pennellii HOM05D001471 ORTHO05D001325 3.0e-15 84.7 63 57.1
CsaV3_5G014390 Cucumis sativus L. HOM05D001471 ORTHO05D001325 3.9e-15 84.3 66 63.6
Thhalv10008567m.g Eutrema salsugineum HOM05D001471 ORTHO05D001325 3.9e-15 84.3 63 63.5
AL1G26840 Arabidopsis lyrata HOM05D001471 ORTHO05D001325 5.1e-15 84.0 63 61.9
PSO017G4503 Papaver somniferum HOM05D001471 ORTHO05D001325 5.1e-15 84.0 69 60.9
Solyc01g005280.3 Solanum lycopersicum HOM05D001471 ORTHO05D001325 5.1e-15 84.0 63 57.1
BcaB08g34415 Brassica carinata HOM05D001471 ORTHO05D001325 1.9e-14 82.0 63 61.9
Sp1g13260 Schrenkiella parvula HOM05D001471 ORTHO05D001325 1.9e-14 82.0 60 65.0
ATR0118G006 Amborella trichopoda HOM05D001471 ORTHO05D001325 2.5e-14 81.6 60 63.3
Carub.0001s1461 Capsella rubella HOM05D001471 ORTHO05D001325 2.5e-14 81.6 63 58.7
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 3.3e-14 81.3 63 61.9
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 3.3e-14 81.3 63 61.9
Lj6A736G85 Lonicera japonica HOM05D001471 ORTHO05D001325 3.3e-14 81.3 96 46.9
BcaB02g06551 Brassica carinata HOM05D001471 ORTHO05D001325 4.3e-14 80.9 63 61.9
A09p61790 Brassica napus HOM05D001471 ORTHO05D001325 4.3e-14 80.9 63 58.7
CARHR015360 Cardamine hirsuta HOM05D001471 ORTHO05D001325 4.3e-14 80.9 63 58.7
PSO017G0351 Papaver somniferum HOM05D001471 ORTHO05D001325 4.3e-14 80.9 63 58.7
BcaB08g34416 Brassica carinata HOM05D001471 ORTHO05D001325 5.6e-14 80.5 63 61.9
BcaC05g25402 Brassica carinata HOM05D001471 ORTHO05D001325 5.6e-14 80.5 63 60.3
C08p45400 Brassica napus HOM05D001471 ORTHO05D001325 5.6e-14 80.5 63 58.7
BolC5t30025H Brassica oleracea HOM05D001471 ORTHO05D001325 5.6e-14 80.5 63 60.3
BolC8t52094H Brassica oleracea HOM05D001471 ORTHO05D001325 5.6e-14 80.5 63 58.7
CARHR015350 Cardamine hirsuta HOM05D001471 ORTHO05D001325 1.3e-13 79.3 63 61.9
A09p61780 Brassica napus HOM05D001471 ORTHO05D001325 1.6e-13 79.0 63 60.3
PSO478G0208 Papaver somniferum HOM05D001471 ORTHO05D001325 1.6e-13 79.0 63 52.4
BcaC07g41537 Brassica carinata HOM05D001471 ORTHO05D001325 4.8e-13 77.4 63 58.7
A06p10870 Brassica napus HOM05D001471 ORTHO05D001325 4.8e-13 77.4 63 58.7
C05p12800 Brassica napus HOM05D001471 ORTHO05D001325 4.8e-13 77.4 63 58.7
C08p45390 Brassica napus HOM05D001471 ORTHO05D001325 4.8e-13 77.4 63 58.7
BolC8t52093H Brassica oleracea HOM05D001471 ORTHO05D001325 4.8e-13 77.4 63 58.7
BraA06t24265Z Brassica rapa HOM05D001471 ORTHO05D001325 4.8e-13 77.4 63 58.7
PSO017G5973 Papaver somniferum HOM05D001471 ORTHO05D001325 1.1e-12 76.3 59 55.9
PSO478G4174 Papaver somniferum HOM05D001471 ORTHO05D001325 1.8e-12 75.5 64 54.7
PSO478G4391 Papaver somniferum HOM05D001471 ORTHO05D001325 1.8e-12 75.5 64 54.7
PSO478G4443 Papaver somniferum HOM05D001471 ORTHO05D001325 1.8e-12 75.5 64 54.7
Potri.015G023000 Populus trichocarpa HOM05D001471 ORTHO05D001325 1.8e-12 75.5 68 50.0
PSO478G5093 Papaver somniferum HOM05D001471 ORTHO05D001325 5.3e-12 73.9 64 53.1
HanXRQChr16g0527321 Helianthus annuus HOM05D001471 ORTHO05D001325 1.5e-11 72.4 66 51.5
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 2.0e-11 72.0 89 42.7
ECA234G0551 Erigeron canadensis HOM05D001103 ORTHO05D000954 2.6e-11 71.6 67 47.8
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 5.8e-11 70.5 50 64.0
DCAR_023573 Daucus carota HOM05D001471 ORTHO05D044728 1.6e-08 62.4 45 55.6
PGSC0003DMG400022783 Solanum tuberosum HOM05D001471 ORTHO05D001325 2.3e-07 58.5 43 60.5
Lsat_1_v5_gn_1_30220 Lactuca sativa HOM05D001471 ORTHO05D001325 3.3e-06 54.7 60 40.0


User provided reference genes

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