Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu057349.1 Olea europaea HOM05D013539 ORTHO05D014921 0.0e+00 1472.2 733 100.0
Oeu030833.1 Olea europaea HOM05D013539 ORTHO05D014921 3.3e-165 586.3 303 97.4
Actinidia34900 Actinidia chinensis HOM05D004909 ORTHO05D009316 1.1e-118 431.8 413 58.4
Sed0005050 Sechium edule HOM05D004909 ORTHO05D009316 3.1e-78 297.4 403 45.9
Sc14g0003260 Simmondsia chinensis HOM05D004909 ORTHO05D009625 1.9e-75 288.1 288 55.6
Sc16g0005690 Simmondsia chinensis HOM05D013539 ORTHO05D014921 2.4e-62 244.6 139 87.1
CAN.G184.82 Capsicum annuum HOM05D013539 ORTHO05D014921 4.2e-59 233.8 233 53.2
Lsat_1_v5_gn_4_65980 Lactuca sativa HOM05D013539 ORTHO05D014921 3.7e-55 220.7 316 44.0
EL10Ac7g16725 Beta vulgaris HOM05D013539 ORTHO05D014921 3.3e-48 197.6 266 44.0
Glyma.15G187750 Glycine max HOM05D013539 ORTHO05D014921 4.5e-45 187.2 268 42.5
TWI14G0838 Tripterygium wilfordii HOM05D004909 ORTHO05D009316 2.2e-39 168.3 116 73.3
Sc13g0007740 Simmondsia chinensis HOM05D004909 ORTHO05D009316 3.7e-39 167.5 115 73.9
Hma1.2p1_0003F.1_g003590 Hydrangea macrophylla HOM05D004909 ORTHO05D009316 7.7e-37 159.8 116 70.7
Manes.15G187766 Manihot esculenta HOM05D013539 ORTHO05D014921 1.7e-36 158.7 147 59.9
RcHm_v2.0_Chr6g0256711 Rosa chinensis HOM05D004909 ORTHO05D009625 2.3e-33 148.3 278 31.3
SEGI_22240 Sequoiadendron giganteum HOM05D004909 ORTHO05D009316 6.8e-33 146.7 378 28.6
AUR62042351 Chenopodium quinoa HOM05D004909 ORTHO05D009316 1.7e-31 142.1 374 28.9
CAN.G659.2 Capsicum annuum HOM05D013539 ORTHO05D014921 2.0e-29 135.2 154 48.1
DCAR_032463 Daucus carota HOM05D013539 ORTHO05D014921 3.5e-29 134.4 271 36.5
EL10Ac1g02202 Beta vulgaris HOM05D004909 ORTHO05D009625 5.8e-24 117.1 151 43.0
Cc00_g11440 Coffea canephora HOM05D004909 ORTHO05D009625 5.8e-24 117.1 129 51.9
AUR62044036 Chenopodium quinoa HOM05D004909 ORTHO05D009625 1.6e-21 109.0 182 36.8
DCAR_032461 Daucus carota HOM05D004909 ORTHO05D009625 1.6e-21 109.0 162 41.4
PGR044G1103 Punica granatum HOM05D004909 ORTHO05D009625 1.0e-20 106.3 322 26.4
Sc11g0004480 Simmondsia chinensis HOM05D004909 ORTHO05D009625 1.0e-20 106.3 69 76.8
PSO063G2824 Papaver somniferum HOM05D004909 ORTHO05D009625 1.7e-20 105.5 239 29.7
CAN.G490.20 Capsicum annuum HOM05D004909 ORTHO05D009625 2.3e-20 105.1 182 36.8
Hma1.2p1_1313F.1_g274950 Hydrangea macrophylla HOM05D004909 ORTHO05D009625 1.1e-19 102.8 63 76.2
PGR004G1782 Punica granatum HOM05D004909 ORTHO05D009625 1.9e-19 102.1 184 33.7
VMungo1067G0003 Vigna mungo HOM05D004909 ORTHO05D009625 2.8e-18 98.2 157 38.9
VMungo0985G0013 Vigna mungo HOM05D013539 ORTHO05D014921 2.3e-17 95.1 86 58.1
Peaxi162Scf00456g00031 Petunia axillaris HOM05D008855 ORTHO05D011808 5.2e-17 94.0 232 31.5
EL10Ac7g16727 Beta vulgaris HOM05D004909 ORTHO05D009625 7.5e-16 90.1 160 36.2
EL10Ac1g01430 Beta vulgaris HOM05D004909 ORTHO05D009625 2.9e-15 88.2 195 30.3
Nitab4.5_0002406g0050 Nicotiana tabacum HOM05D008855 ORTHO05D011808 2.9e-15 88.2 199 32.7
Ah.10g028110 Amaranthus hybridus HOM05D004909 ORTHO05D009316 4.9e-15 87.4 96 46.9
Nitab4.5_0000014g0460 Nicotiana tabacum HOM05D004909 ORTHO05D009625 1.9e-14 85.5 176 33.0
Nitab4.5_0000081g0150 Nicotiana tabacum HOM05D004909 ORTHO05D009625 5.4e-14 84.0 174 31.6
EL10Ac1g01431 Beta vulgaris HOM05D004909 ORTHO05D009316 1.0e-12 79.7 104 39.4
DCAR_032462 Daucus carota HOM05D004909 ORTHO05D009316 1.0e-12 79.7 119 37.0
AUR62044035 Chenopodium quinoa HOM05D004909 ORTHO05D009316 4.3e-11 74.3 98 40.8
Solyc05g045720.1 Solanum lycopersicum HOM05D004909 ORTHO05D009625 4.3e-11 74.3 91 44.0
Aqoxy2G02243 Aquilegia oxysepala HOM05D004909 ORTHO05D009625 2.8e-10 71.6 88 48.9
Aqoxy3G01128 Aquilegia oxysepala HOM05D004909 ORTHO05D009625 2.8e-10 71.6 88 48.9
AUR62010529 Chenopodium quinoa HOM05D004909 ORTHO05D005619 2.8e-10 71.6 95 40.0
Nitab4.5_0002739g0200 Nicotiana tabacum HOM05D008855 ORTHO05D011808 2.8e-10 71.6 139 32.4
Lsat_1_v5_gn_5_24721 Lactuca sativa HOM05D001793 ORTHO05D001938 3.1e-09 68.2 59 55.9
AUR62026824 Chenopodium quinoa HOM05D000533 ORTHO05D001069 1.2e-08 66.2 90 43.3
HPP92_026900 Vanilla planifolia HOM05D004909 ORTHO05D009316 5.8e-08 63.9 52 65.4
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 1.3e-07 62.8 94 41.5
Nitab4.5_0000172g0290 Nicotiana tabacum HOM05D008855 ORTHO05D011808 2.2e-07 62.0 163 28.8
Nitab4.5_0000393g0120 Nicotiana tabacum HOM05D008855 ORTHO05D011808 2.2e-07 62.0 97 37.1
Lalb_Chr00c21g0405631 Lupinus albus HOM05D004909 ORTHO05D009316 3.7e-07 61.2 137 30.7
Solyc00g112190.2 Solanum lycopersicum HOM05D008855 ORTHO05D011808 1.1e-06 59.7 142 32.4
Cc00_g01880 Coffea canephora HOM05D004909 ORTHO05D009625 1.9e-06 58.9 64 46.9
EL10Ac1g02201 Beta vulgaris HOM05D004909 ORTHO05D009316 2.4e-06 58.5 113 37.2
Aqoxy2G02244 Aquilegia oxysepala HOM05D004909 ORTHO05D009316 7.1e-06 57.0 112 33.0
Aqoxy3G01127 Aquilegia oxysepala HOM05D004909 ORTHO05D009316 7.1e-06 57.0 112 33.0
Nitab4.5_0000172g0400 Nicotiana tabacum HOM05D008855 ORTHO05D011808 9.2e-06 56.6 200 28.0


User provided reference genes

Program Settings