Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 2395.2 1220 100.0
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 2062.3 1232 86.6
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1588.2 1233 70.0
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1587.8 1252 68.1
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1579.3 1242 69.6
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1566.6 1235 68.1
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1545.8 1256 66.5
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1545.0 1177 70.5
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1543.5 1233 67.6
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1543.1 1232 67.2
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1540.0 1242 66.6
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1537.3 1233 67.2
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1523.1 1232 66.2
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1521.9 1233 67.1
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1520.4 1240 66.5
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1515.4 1240 66.5
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1510.4 1232 66.0
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1508.8 1204 66.3
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1505.3 1204 67.4
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1497.6 1216 65.0
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1485.3 1193 65.3
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1482.6 1241 65.0
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1482.2 1247 64.7
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1471.8 1243 65.7
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1470.3 1200 64.6
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1464.5 1242 63.2
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1464.1 1233 64.3
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1454.1 1240 65.3
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1453.3 1242 65.1
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1452.6 1234 63.5
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1442.9 1248 63.4
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1442.6 1195 64.8
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1441.0 1171 65.2
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1439.9 1229 63.3
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1435.6 1238 62.9
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1429.5 1168 66.1
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1426.8 1242 63.3
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1423.7 1169 64.8
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1422.9 1199 63.7
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1419.4 1183 64.2
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1418.3 1189 64.0
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1417.9 1189 64.1
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1416.4 1234 63.5
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1414.4 1205 63.7
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1413.7 1234 62.9
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1411.0 1205 63.4
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1409.8 1202 63.1
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1406.0 1213 63.6
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1404.4 1210 64.5
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1404.4 1206 65.0
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1402.5 1225 61.5
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1402.5 1223 62.8
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1400.2 1204 63.1
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1392.1 1200 62.5
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1392.1 1200 62.5
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1388.2 1088 67.4
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1382.9 1191 63.3
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1379.4 1236 61.3
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1375.1 1243 61.4
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1375.1 1240 61.1
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1373.2 1205 64.2
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1369.8 1209 61.5
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1358.2 1223 61.0
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1352.4 1228 60.6
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1344.7 1101 65.3
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1342.4 1163 62.1
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1339.7 1148 63.2
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1337.0 1215 61.8
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1336.6 1250 59.9
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1335.5 1081 65.6
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1321.2 1209 60.6
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1314.3 1103 64.2
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1312.4 968 70.0
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1283.9 935 72.2
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1282.7 1257 55.5
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1274.2 968 68.1
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 0.0e+00 1263.1 1257 57.2
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1262.7 970 67.9
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1262.7 1063 65.8
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1255.0 1168 59.0
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 0.0e+00 1252.3 1238 57.4
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1242.6 963 67.7
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1238.4 966 67.7
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1235.7 1044 65.5
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1234.9 1116 60.4
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1222.2 962 66.4
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1219.5 962 66.2
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1217.6 976 65.6
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1217.2 1179 56.6
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1209.9 1090 60.8
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 0.0e+00 1196.4 1034 62.9
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 0.0e+00 1187.2 1176 58.0
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1129.0 963 62.4
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 0.0e+00 1119.0 1022 60.5
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 0.0e+00 1107.8 1121 55.3
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.0e-310 1070.5 892 62.8
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 4.4e-303 1045.0 1116 53.0
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 1.7e-286 989.9 1000 55.6
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 4.1e-285 985.3 945 59.6
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 3.3e-234 816.2 1258 41.8
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 3.1e-232 809.7 1114 44.7
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 2.2e-222 776.9 1110 43.6
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 6.5e-206 722.2 1238 42.6
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 1.5e-194 684.5 1118 40.3
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-185 654.4 731 53.9
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 6.8e-179 632.5 538 61.5
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 5.0e-174 616.3 595 56.8
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 3.5e-167 593.6 744 47.8
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 9.9e-154 548.9 465 61.9
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 1.4e-120 438.7 316 70.3
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 3.3e-117 427.6 1367 29.7
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 1.3e-105 389.0 332 64.2
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.3e-105 389.0 332 64.2
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.3e-105 389.0 332 64.2
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 4.4e-93 347.4 213 80.3
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 9.4e-80 303.1 181 80.1
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 1.4e-78 299.3 189 76.7
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 7.5e-77 293.5 233 68.2
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 7.5e-77 293.5 233 68.2
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 6.5e-73 280.4 256 62.1
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 3.0e-70 271.6 154 82.5
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 4.0e-70 271.2 156 79.5
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 9.5e-64 250.0 158 76.6
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 6.1e-63 247.3 184 71.7
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 4.5e-58 231.1 128 82.8
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.1e-46 193.4 309 42.1
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 8.3e-44 183.7 108 81.5
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 3.2e-43 181.8 182 53.8
Aa31LG2G16170 Aethionema arabicum HOM05D004348 ORTHO05D006191 3.5e-42 178.3 247 47.4
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 7.8e-42 177.2 104 79.8
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 5.1e-41 174.5 283 40.6
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 8.1e-39 167.2 304 36.2
SEGI_03645 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.6e-26 126.3 257 37.7
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 1.3e-25 123.2 191 45.0
CAN.G371.43 Capsicum annuum HOM05D004348 ORTHO05D006191 2.3e-25 122.5 180 47.2
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 3.1e-22 112.1 82 70.7
Atru.chr1.1667 Acer truncatum HOM05D004348 ORTHO05D006191 6.9e-22 110.9 171 45.0
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 1.5e-21 109.8 98 65.3
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.8e-21 107.8 283 28.6
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 1.6e-18 99.8 73 69.9
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.7e-18 99.0 293 29.4
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.6e-18 98.2 307 28.0
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.6e-18 98.2 307 28.7
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.0e-17 95.5 307 28.7
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-16 93.6 277 27.4
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.6e-16 91.3 271 27.7
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.6e-15 89.7 286 29.0
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 4.8e-15 88.2 297 28.3
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.8e-15 88.2 292 28.4
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.4e-14 86.7 285 29.5
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 9.9e-13 80.5 46 76.1
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.9e-12 78.2 169 30.8
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 4.9e-12 78.2 250 28.4
GSVIVG01009550001 Vitis vinifera HOM05D004348 ORTHO05D006191 8.4e-12 77.4 63 68.3
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.0e-10 71.2 172 29.1
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 5.1e-09 68.2 38 78.9
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 3.3e-08 65.5 288 25.7
Mapoly0147s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253211 2.1e-07 62.8 247 27.1
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 2.8e-07 62.4 280 24.6
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 3.7e-07 62.0 71 49.3
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 6.2e-07 61.2 288 26.4
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 1.4e-06 60.1 233 25.8
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 1.8e-06 59.7 288 25.7
Psat0s4914g0040 Pisum sativum HOM05D001376 ORTHO05D003384 2.4e-06 59.3 45 73.3
Mapoly0147s0002 Marchantia polymorpha HOM05D020945 ORTHO05D251377 5.3e-06 58.2 286 25.9


User provided reference genes

Program Settings