Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 1.5e-80 303.5 256 100.0
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 2.3e-65 253.1 255 90.2
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 6.8e-65 251.5 254 87.8
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 1.3e-63 247.3 255 88.6
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 2.4e-62 243.0 255 87.5
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 1.3e-60 237.3 255 85.1
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 5.1e-60 235.3 255 81.6
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 1.9e-59 233.4 249 83.1
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 3.3e-59 232.6 255 86.7
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 9.5e-59 231.1 255 85.5
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 2.4e-57 226.5 209 88.5
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 8.9e-57 224.6 255 84.3
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 2.6e-56 223.0 209 88.0
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 9.9e-56 221.1 257 83.7
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 1.7e-55 220.3 209 86.1
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 6.4e-55 218.4 256 71.1
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 4.6e-53 212.2 255 83.1
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 7.8e-53 211.5 252 82.5
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 1.0e-52 211.1 258 76.4
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 2.3e-52 209.9 255 80.8
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 3.9e-52 209.1 252 71.4
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 5.1e-52 208.8 251 82.5
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 1.1e-51 207.6 255 78.4
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 1.1e-51 207.6 255 82.0
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 1.5e-51 207.2 255 69.8
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 1.5e-51 207.2 255 82.7
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 1.9e-51 206.8 206 83.5
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 2.5e-51 206.5 255 81.2
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 2.5e-51 206.5 209 81.3
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 3.3e-51 206.1 210 81.0
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 4.3e-51 205.7 255 82.0
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 7.3e-51 204.9 255 81.2
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 7.3e-51 204.9 255 81.6
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 7.3e-51 204.9 255 81.6
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 2.1e-50 203.4 255 81.2
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 2.8e-50 203.0 202 84.2
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.8e-50 203.0 255 81.2
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 4.7e-50 202.2 208 81.7
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 6.2e-50 201.8 255 75.3
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 1.4e-49 200.7 250 82.0
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 1.8e-49 200.3 249 75.5
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 2.4e-49 199.9 251 79.7
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 3.1e-49 199.5 115 80.9
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 5.3e-49 198.7 212 78.8
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 6.9e-49 198.4 202 83.7
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 1.2e-48 197.6 251 82.5
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.5e-48 197.2 115 82.6
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 1.5e-48 197.2 202 83.7
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 2.0e-48 196.8 252 67.5
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 2.0e-48 196.8 255 79.6
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 2.6e-48 196.4 250 80.8
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 3.4e-48 196.1 202 82.7
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 4.4e-48 195.7 202 83.7
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 1.3e-47 194.1 248 78.6
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 1.3e-47 194.1 206 80.6
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 1.7e-47 193.7 115 80.9
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 2.9e-47 193.0 250 80.4
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 4.9e-47 192.2 252 79.0
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 1.1e-46 191.0 205 81.0
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 1.9e-46 190.3 239 56.1
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 2.4e-46 189.9 204 80.9
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 3.2e-46 189.5 208 80.8
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 4.2e-46 189.1 208 79.3
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 5.4e-46 188.7 208 78.8
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 7.1e-46 188.3 215 78.6
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 1.2e-45 187.6 212 78.3
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 2.1e-45 186.8 114 77.2
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 2.7e-45 186.4 248 78.2
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 2.7e-45 186.4 253 79.4
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 7.8e-45 184.9 251 79.7
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 5.1e-44 182.2 248 79.0
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 8.7e-44 181.4 219 67.6
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 1.1e-43 181.0 219 67.6
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 1.5e-43 180.6 114 73.7
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 1.9e-43 180.3 115 73.9
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 5.6e-43 178.7 255 77.6
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 9.6e-43 177.9 256 76.6
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 1.6e-42 177.2 252 74.2
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 2.1e-42 176.8 115 73.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.8e-42 176.4 235 79.6
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 8.1e-42 174.9 111 72.1
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.8e-41 173.7 200 73.5
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 2.4e-41 173.3 256 77.0
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 3.1e-41 172.9 213 43.7
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 3.1e-41 172.9 246 74.8
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 4.0e-41 172.6 264 61.0
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 4.0e-41 172.6 246 74.8
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 1.5e-40 170.6 207 75.8
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 2.0e-40 170.2 115 73.0
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.4e-40 169.5 200 73.5
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.4e-40 169.5 200 73.5
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.4e-40 169.5 200 73.5
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 4.5e-40 169.1 200 73.5
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 9.9e-40 167.9 256 75.4
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 1.7e-39 167.2 208 75.5
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 1.7e-39 167.2 208 75.5
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 2.9e-39 166.4 109 71.6
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 4.9e-39 165.6 255 74.1
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 6.4e-39 165.2 256 75.0
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 8.4e-39 164.9 256 75.0
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 1.4e-38 164.1 256 73.4
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 1.9e-38 163.7 255 75.3
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 3.2e-38 162.9 247 72.9
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 3.2e-38 162.9 201 51.2
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 4.2e-38 162.5 107 72.0
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 1.0e-36 157.9 111 68.5
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 3.3e-35 152.9 208 42.3
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 4.8e-34 149.1 255 71.0
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 1.4e-33 147.5 205 71.7
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 1.4e-33 147.5 110 65.5
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 1.4e-33 147.5 110 65.5
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 1.5e-32 144.1 106 65.1
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 3.8e-31 139.4 212 68.4
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 3.9e-28 129.4 255 69.0
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 1.9e-27 127.1 114 56.1
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 3.7e-26 122.9 112 50.9
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 9.0e-25 118.2 206 64.1
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 1.9e-22 110.5 115 53.9
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 1.3e-18 97.8 257 51.8
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 1.3e-18 97.8 257 51.8
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 2.2e-18 97.1 255 65.5
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 2.2e-18 97.1 148 39.9
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 3.7e-18 96.3 257 51.8
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 3.7e-18 96.3 257 51.8
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 6.3e-18 95.5 115 50.4
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 3.1e-17 93.2 114 44.7
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 3.1e-17 93.2 108 53.7
Oeu009219.1 Olea europaea HOM05D004768 ORTHO05D005812 2.6e-16 90.1 177 57.6
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 3.4e-16 89.7 99 44.4
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 7.7e-16 88.6 48 83.3
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.0e-15 88.2 108 51.9
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-15 87.0 57 68.4
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 3.8e-15 86.3 50 78.0
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 5.0e-15 85.9 257 52.1
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 2.5e-11 73.6 204 58.8
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.3e-11 72.8 44 77.3
CBR_g39931 Chara braunii HOM05D000019 ORTHO05D000002 6.9e-09 65.5 117 37.6
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 6.5e-07 58.9 116 36.2
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 2.5e-06 57.0 184 51.1
Ciclev10025285m.g Citrus clementina HOM05D002634 ORTHO05D003100 2.5e-06 57.0 121 35.5
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 5.5e-06 55.8 122 31.1
SMO364G0742 Selaginella moellendorffii HOM05D002410 ORTHO05D002805 7.2e-06 55.5 108 37.0
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 9.4e-06 55.1 101 35.6
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 9.4e-06 55.1 104 31.7


User provided reference genes

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