Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 2.7e-52 208.4 106 100.0
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.3e-38 162.9 105 80.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.3e-22 109.0 102 62.7
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 7.3e-21 104.0 92 62.0
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.2e-20 103.2 99 57.6
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 2.8e-20 102.1 105 59.0
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 3.6e-20 101.7 93 55.9
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 6.2e-20 100.9 105 56.2
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.4e-19 99.8 96 55.2
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.3e-19 99.0 99 54.5
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 4.0e-19 98.2 99 56.6
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.0e-19 98.2 106 56.6
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 6.8e-19 97.4 105 54.3
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.9e-19 97.1 92 57.6
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 8.9e-19 97.1 106 57.5
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.4e-18 95.1 91 57.1
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 5.8e-18 94.4 93 59.1
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 5.8e-18 94.4 100 54.0
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 7.5e-18 94.0 93 59.1
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.3e-17 93.2 95 54.7
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.7e-17 92.8 99 52.5
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.2e-17 92.4 91 56.0
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.1e-16 90.1 80 61.2
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.4e-16 89.7 95 57.9
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.9e-16 89.4 95 51.6
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.4e-16 89.0 96 56.2
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 2.4e-16 89.0 95 51.6
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.4e-16 87.8 94 57.4
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 7.1e-16 87.4 96 55.2
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 7.1e-16 87.4 95 52.6
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 7.1e-16 87.4 90 54.4
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.2e-15 86.7 80 61.2
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.2e-15 86.7 90 53.3
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.2e-15 86.7 97 53.6
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.6e-15 86.3 94 57.4
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.7e-15 85.5 90 51.1
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 6.0e-15 84.3 97 53.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 7.8e-15 84.0 90 53.3
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.8e-15 84.0 95 55.8
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 7.8e-15 84.0 91 56.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.3e-14 83.2 90 52.2
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.7e-14 82.8 90 52.2
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.3e-14 82.4 97 51.5
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.3e-14 82.4 100 50.0
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.0e-14 82.0 97 50.5
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.9e-14 81.6 94 55.3
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 5.1e-14 81.3 83 51.8
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.1e-13 80.1 83 50.6
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.1e-13 80.1 90 52.2
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 1.1e-13 80.1 90 48.9
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.1e-13 80.1 76 60.5
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.1e-13 80.1 97 49.5
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 1.5e-13 79.7 95 54.7
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 2.5e-13 79.0 95 50.5
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 3.3e-13 78.6 68 63.2
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 3.3e-13 78.6 95 55.8
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 5.6e-13 77.8 117 45.3
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.2e-12 76.6 97 49.5
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.6e-12 76.3 92 50.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.1e-12 75.9 81 53.1
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 2.8e-12 75.5 106 47.2
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 4.7e-12 74.7 103 45.6
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 4.7e-12 74.7 83 53.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 6.2e-12 74.3 110 44.5
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 1.1e-11 73.6 85 50.6
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.4e-11 73.2 76 56.6
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.4e-11 73.2 91 50.5
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.8e-11 72.8 92 51.1
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.3e-11 72.4 73 57.5
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 2.3e-11 72.4 100 49.0
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 3.1e-11 72.0 92 47.8
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.8e-11 70.9 96 47.9
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.8e-11 70.9 91 49.5
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 6.8e-11 70.9 96 50.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 8.9e-11 70.5 105 44.8
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 8.9e-11 70.5 71 56.3
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.5e-10 69.7 93 52.7
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 2.0e-10 69.3 96 46.9
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.0e-10 69.3 96 46.9
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.0e-10 69.3 96 46.9
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.6e-10 68.9 78 52.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 3.4e-10 68.6 94 47.9
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.8e-10 67.8 95 45.3
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 5.8e-10 67.8 103 46.6
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.7e-09 66.2 90 53.3
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.2e-09 65.9 42 76.2
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.2e-09 65.9 78 51.3
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.2e-09 65.9 96 45.8
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 2.2e-09 65.9 96 41.7
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.8e-09 65.1 75 52.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.9e-09 64.7 96 47.9
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 4.9e-09 64.7 105 41.0
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 6.4e-09 64.3 86 47.7
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 8.4e-09 63.9 65 56.9
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.1e-08 63.5 108 42.6
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-08 63.5 103 44.7
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.1e-08 63.5 86 47.7
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-08 62.8 69 52.2
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.9e-08 62.8 69 52.2
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.9e-08 62.8 69 52.2
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.9e-08 62.8 69 52.2
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.9e-08 62.8 69 52.2
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.9e-08 62.8 71 43.7
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 2.4e-08 62.4 68 54.4
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 2.4e-08 62.4 68 54.4
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.4e-08 62.4 68 54.4
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.4e-08 62.4 46 65.2
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-08 62.0 68 54.4
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 3.2e-08 62.0 66 54.5
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.1e-08 61.6 85 47.1
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 5.4e-08 61.2 66 50.0
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.4e-08 61.2 61 55.7
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 7.1e-08 60.8 68 52.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 7.1e-08 60.8 65 56.9
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 7.1e-08 60.8 74 51.4
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 9.2e-08 60.5 92 42.4
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 9.2e-08 60.5 69 52.2
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 9.2e-08 60.5 71 50.7
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 9.2e-08 60.5 65 55.4
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-07 60.1 77 49.4
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-07 59.3 79 48.1
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 2.1e-07 59.3 74 48.6
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 2.1e-07 59.3 74 48.6
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.5e-07 58.5 65 56.9
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 3.5e-07 58.5 88 40.9
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 3.5e-07 58.5 78 46.2
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 4.6e-07 58.2 58 51.7
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 4.6e-07 58.2 83 45.8
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 4.6e-07 58.2 94 42.6
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 4.6e-07 58.2 89 39.3
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 7.8e-07 57.4 60 60.0
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 7.8e-07 57.4 99 41.4
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 1.0e-06 57.0 45 66.7
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 1.0e-06 57.0 112 39.3
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 1.3e-06 56.6 95 41.1
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-06 56.6 65 49.2
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.3e-06 56.6 65 49.2
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.3e-06 56.6 92 39.1
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 1.7e-06 56.2 65 52.3
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.7e-06 56.2 77 46.8
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.3e-06 55.8 65 53.8
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.3e-06 55.8 97 40.2
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 3.0e-06 55.5 60 51.7
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 3.0e-06 55.5 44 65.9
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.0e-06 55.5 100 46.0
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 3.9e-06 55.1 71 49.3
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 3.9e-06 55.1 67 52.2
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 3.9e-06 55.1 46 67.4
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 5.1e-06 54.7 41 65.9
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 5.1e-06 54.7 68 48.5
Ca_26655_v3 Cicer arietinum L. HOM05D003360 ORTHO05D003759 5.1e-06 54.7 59 47.5
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 5.1e-06 54.7 96 43.8
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 5.1e-06 54.7 52 55.8
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.6e-06 54.3 98 32.7
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 6.6e-06 54.3 59 49.2
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 6.6e-06 54.3 59 49.2
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 6.6e-06 54.3 59 49.2
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 6.6e-06 54.3 59 49.2
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 6.6e-06 54.3 59 49.2
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 8.6e-06 53.9 67 43.3
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 8.6e-06 53.9 67 43.3
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 8.6e-06 53.9 67 43.3


User provided reference genes

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