Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 2386.3 1203 100.0
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1999.6 1204 83.5
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1985.3 1205 82.5
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1951.4 1203 82.5
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1949.1 1207 81.9
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1944.9 1205 80.7
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1932.9 1201 81.5
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1905.6 1205 79.2
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1905.6 1204 80.7
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1902.5 1203 79.1
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1901.3 1205 79.2
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1899.4 1219 79.3
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1893.6 1202 78.0
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1892.5 1203 78.9
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1892.5 1290 76.4
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1891.7 1290 76.2
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1891.7 1290 76.2
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1882.8 1201 79.4
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1881.7 1201 79.0
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1879.8 1201 79.0
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1873.6 1203 78.6
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1872.8 1201 79.1
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1872.1 1207 79.0
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1860.9 1295 73.4
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1858.6 1205 78.3
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1852.0 1203 77.7
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1851.6 1205 77.8
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1850.9 1213 76.8
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1848.9 1203 77.6
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1848.9 1204 77.0
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1846.6 1205 77.2
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1844.7 1206 76.9
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1837.8 1205 76.5
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1837.4 1234 76.9
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1835.5 1221 76.1
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1834.3 1206 76.9
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1833.2 1205 76.2
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1832.0 1205 76.3
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1831.2 1221 76.2
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1825.4 1205 76.3
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1825.1 1221 75.9
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1823.1 1201 76.3
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1822.4 1205 75.7
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1821.2 1207 75.7
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1818.1 1347 71.9
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1817.0 1203 76.0
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1811.6 1207 76.0
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1810.4 1202 76.6
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1804.3 1205 75.2
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1803.5 1211 75.5
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1803.1 1203 76.0
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1802.7 1201 75.9
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1797.7 1205 75.4
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1793.9 1205 74.7
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1792.3 1203 75.3
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1791.9 1201 75.8
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1789.2 1203 75.1
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1786.5 1203 75.1
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1786.2 1205 74.9
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1785.4 1203 75.1
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1785.4 1205 74.9
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1785.0 1205 75.4
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1780.4 1205 74.9
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1780.4 1205 74.6
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1780.0 1205 74.6
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1776.5 1205 74.2
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1773.1 1205 74.5
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1773.1 1204 73.8
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1770.0 1205 74.3
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1764.2 1132 79.0
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1763.4 1203 74.1
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1762.7 1203 74.5
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1758.8 1203 74.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1755.3 1205 73.8
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1751.9 1203 73.6
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1751.9 1205 73.6
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1733.0 1199 74.1
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1723.4 1203 72.3
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1717.2 1214 71.7
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1713.4 1203 73.0
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1702.2 1101 79.0
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1697.6 1206 72.1
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1691.0 1209 72.3
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1675.2 1208 71.4
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1629.4 1212 68.6
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1624.8 1204 69.9
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1596.6 1208 67.1
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1564.7 1040 75.8
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1559.7 1045 74.6
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1559.7 1045 74.5
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1552.3 1213 65.0
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1539.6 1013 77.4
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1533.9 1210 64.6
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1494.9 1023 74.7
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1479.9 984 76.4
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1476.1 983 76.5
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1445.6 997 73.6
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1439.5 1065 69.0
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1421.8 899 80.0
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1342.0 827 81.1
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1329.7 938 72.3
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1308.1 867 75.5
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1298.5 1221 55.5
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1214.5 1234 52.4
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1182.5 904 66.9
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1093.6 1225 49.9
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 8.2e-312 1073.9 1225 49.5
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.4e-274 950.3 1202 43.4
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 4.1e-269 932.2 1327 41.9
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.1e-253 880.9 518 86.5
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 6.8e-240 835.1 1241 40.4
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.0e-223 780.4 1147 40.6
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 2.4e-197 693.7 424 82.3
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.1e-152 543.5 754 43.6
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.1e-149 535.4 435 63.2
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 3.0e-147 527.3 486 59.3
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.7e-145 521.5 306 82.0
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 3.5e-143 513.8 324 78.7
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.5e-130 471.9 350 68.9
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.5e-130 471.9 323 71.5
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 5.4e-120 436.8 292 76.7
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 3.2e-112 411.0 315 67.3
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 4.1e-112 410.6 329 67.5
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.4e-98 364.4 361 53.5
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 7.6e-90 336.7 256 69.5
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 6.6e-86 323.6 399 47.4
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.5e-85 322.4 290 53.1
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.5e-66 259.2 166 75.9
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 3.1e-59 235.0 277 51.3
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 9.1e-51 206.8 124 79.8
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.1e-48 199.9 117 79.5
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.2e-48 198.0 166 59.0
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 9.4e-48 196.8 146 71.2
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 2.3e-46 192.2 116 77.6
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.7e-44 184.9 138 62.3
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 1.2e-42 179.9 728 24.9
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 6.1e-39 167.5 197 50.3
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.2e-38 164.5 270 40.0
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 4.4e-37 161.4 164 53.0
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.0e-30 140.2 86 82.6
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.0e-29 136.0 166 45.8
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.3e-20 104.4 71 66.2
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 5.9e-18 97.8 59 74.6
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 9.5e-16 90.5 62 72.6
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.7e-15 88.2 234 32.9
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.3e-12 80.1 47 74.5
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 2.2e-12 79.3 74 66.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 2.2e-12 79.3 74 66.2
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 1.1e-11 77.0 60 71.7
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 3.5e-10 72.0 70 54.3
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 4.5e-10 71.6 86 51.2
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.3e-09 69.3 48 62.5
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.6e-07 63.2 45 68.9
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.7e-07 61.6 103 37.9
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.0e-06 60.5 38 65.8
BcaC03g13346 Brassica carinata HOM05D004589 ORTHO05D023960 4.0e-06 58.5 48 70.8


User provided reference genes

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