Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu056756.2 Olea europaea HOM05D004251 ORTHO05D005010 2.9e-282 974.5 486 100.0
Oeu033644.1 Olea europaea HOM05D004251 ORTHO05D005010 1.2e-208 729.9 512 75.6
Oeu041447.3 Olea europaea HOM05D004251 ORTHO05D005010 5.8e-206 721.1 492 77.2
MSTRG.2762 Avicennia marina HOM05D004251 ORTHO05D005010 5.8e-182 641.3 499 66.9
QL06p046103 Quercus lobata HOM05D004251 ORTHO05D005010 1.2e-179 633.6 494 66.0
Hma1.2p1_0224F.1_g094630 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 1.9e-177 626.3 496 66.9
Actinidia36561 Actinidia chinensis HOM05D004251 ORTHO05D005010 2.5e-177 625.9 494 67.2
QL06p046182 Quercus lobata HOM05D004251 ORTHO05D005010 1.3e-176 623.6 478 66.9
GSVIVG01018958001 Vitis vinifera HOM05D004251 ORTHO05D005010 3.6e-176 622.1 494 66.0
HanXRQChr09g0274621 Helianthus annuus HOM05D004251 ORTHO05D005010 3.1e-175 619.0 494 64.8
Cc11_g04410 Coffea canephora HOM05D004251 ORTHO05D005010 2.6e-174 615.9 482 65.6
PGR102G3108 Punica granatum HOM05D004251 ORTHO05D005010 1.4e-172 610.1 494 65.8
TAR625G0258 Trochodendron aralioides HOM05D004251 ORTHO05D005010 5.5e-172 608.2 495 64.0
Manes.02G094600 Manihot esculenta HOM05D004251 ORTHO05D005010 1.6e-171 606.7 494 64.2
CSS0006960 Camellia sinensis var. sinensis HOM05D004251 ORTHO05D005010 2.1e-171 606.3 494 65.2
ECA232G3289 Erigeron canadensis HOM05D004251 ORTHO05D005010 1.0e-170 604.0 494 63.2
arahy.Tifrunner.gnm1.ann1.UMLA17 Arachis hypogaea HOM05D004251 ORTHO05D005010 1.5e-169 600.1 489 64.0
TWI73G1034 Tripterygium wilfordii HOM05D004251 ORTHO05D005010 4.3e-169 598.6 494 63.4
COL.COLO4_22078 Corchorus olitorius HOM05D004251 ORTHO05D005010 5.6e-169 598.2 494 63.8
CiPaw.01G038300 Carya illinoinensis HOM05D004251 ORTHO05D005010 1.3e-168 597.0 494 64.0
Lalb_Chr05g0227621 Lupinus albus HOM05D004251 ORTHO05D005010 3.7e-168 595.5 494 62.8
DCAR_017290 Daucus carota HOM05D004251 ORTHO05D005010 1.1e-167 594.0 494 63.0
Prupe.7G154800 Prunus persica HOM05D004251 ORTHO05D005010 1.4e-167 593.6 496 63.3
Glyma.16G139600 Glycine max HOM05D004251 ORTHO05D005010 3.1e-167 592.4 494 62.3
VMungo0251G3189 Vigna mungo HOM05D004251 ORTHO05D005010 3.4e-166 589.0 494 63.2
RcHm_v2.0_Chr2g0101541 Rosa chinensis HOM05D004251 ORTHO05D005010 4.5e-166 588.6 496 62.9
Thecc.01G035600 Theobroma cacao HOM05D004251 ORTHO05D005010 4.5e-166 588.6 494 63.4
Eucgr.D02612 Eucalyptus grandis HOM05D004251 ORTHO05D005010 1.3e-165 587.0 496 62.7
MD02G1147300 Malus domestica HOM05D004251 ORTHO05D005010 1.7e-165 586.6 497 63.0
Glyma.02G056800 Glycine max HOM05D004251 ORTHO05D005010 4.9e-165 585.1 494 61.9
Atru.chr3.571 Acer truncatum HOM05D004251 ORTHO05D005010 1.4e-164 583.6 494 62.1
Medtr8g077580 Medicago truncatula HOM05D004251 ORTHO05D005010 1.9e-164 583.2 495 62.0
Duzib147G0019 Durio zibethinus HOM05D004251 ORTHO05D005010 2.5e-164 582.8 494 62.6
Ca_22268_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 4.2e-164 582.0 494 62.1
Ca_22281_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 4.2e-164 582.0 494 62.1
Ciclev10025293m.g Citrus clementina HOM05D004251 ORTHO05D005010 5.5e-164 581.6 494 62.8
CANSAT01G2654 Cannabis sativa HOM05D004251 ORTHO05D005010 1.6e-163 580.1 478 64.2
Cpa.g.sc39.20 Carica papaya HOM05D004251 ORTHO05D005010 2.1e-163 579.7 494 61.3
Aa31LG1G15090 Aethionema arabicum HOM05D004251 ORTHO05D005010 7.9e-163 577.8 494 61.1
MELO3C016373.2 Cucumis melo HOM05D004251 ORTHO05D005010 5.1e-162 575.1 494 61.3
MD15G1261600 Malus domestica HOM05D004251 ORTHO05D005010 6.7e-162 574.7 499 62.1
Sed0021773 Sechium edule HOM05D004251 ORTHO05D005010 6.7e-162 574.7 494 62.1
Thhalv10024792m.g Eutrema salsugineum HOM05D004251 ORTHO05D005010 1.1e-161 573.9 494 60.9
Lj1g0003213 Lotus japonicus HOM05D004251 ORTHO05D005010 1.9e-161 573.2 494 61.5
THA.LOC104821294 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 1.9e-161 573.2 499 60.9
PGSC0003DMG402003505 Solanum tuberosum HOM05D004251 ORTHO05D005010 3.3e-161 572.4 495 62.0
Psat4g093040 Pisum sativum HOM05D004251 ORTHO05D005010 7.4e-161 571.2 495 60.4
FAN19G0724 Fragaria x ananassa HOM05D004251 ORTHO05D005010 1.6e-160 570.1 496 61.1
Lsat_1_v5_gn_4_152121 Lactuca sativa HOM05D004251 ORTHO05D005010 1.6e-160 570.1 494 60.7
Sopen02g029950 Solanum pennellii HOM05D004251 ORTHO05D005010 1.6e-160 570.1 494 62.1
Solyc02g085250.4 Solanum lycopersicum HOM05D004251 ORTHO05D005010 2.1e-160 569.7 494 61.9
Nn5g29614 Nelumbo nucifera HOM05D004251 ORTHO05D005010 2.8e-160 569.3 497 60.8
FvH4_1g13300 Fragaria vesca HOM05D004251 ORTHO05D005010 4.8e-160 568.5 496 60.9
FAN26G0083 Fragaria x ananassa HOM05D004251 ORTHO05D005010 4.8e-160 568.5 499 61.1
Sp7g14220 Schrenkiella parvula HOM05D004251 ORTHO05D005010 6.3e-160 568.2 477 61.0
CARHR281200 Cardamine hirsuta HOM05D004251 ORTHO05D005010 8.2e-160 567.8 497 59.6
Gohir.D03G014500 Gossypium hirsutum HOM05D004251 ORTHO05D005010 1.4e-159 567.0 494 61.3
Gorai.003G014800 Gossypium raimondii HOM05D004251 ORTHO05D005010 2.4e-159 566.2 494 61.5
LjContig00448g0013547 Lotus japonicus HOM05D004251 ORTHO05D005010 2.4e-159 566.2 495 60.4
AT5G49555 Arabidopsis thaliana HOM05D004251 ORTHO05D005010 5.3e-159 565.1 494 59.5
Sabra07G0022400 Salix brachista HOM05D004251 ORTHO05D005010 9.0e-159 564.3 551 56.8
THA.LOC104821560 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 1.2e-158 563.9 499 60.5
Psat4g093160 Pisum sativum HOM05D004251 ORTHO05D005010 1.5e-158 563.5 495 60.2
CsaV3_4G005780 Cucumis sativus L. HOM05D004251 ORTHO05D005010 2.0e-158 563.1 494 60.5
Potri.007G025300 Populus trichocarpa HOM05D004251 ORTHO05D005010 2.0e-158 563.1 471 63.5
Carub.0008s2797 Capsella rubella HOM05D004251 ORTHO05D005010 5.9e-158 561.6 494 59.3
Nitab4.5_0000178g0050 Nicotiana tabacum HOM05D004251 ORTHO05D005010 1.3e-157 560.5 494 61.3
unitig_21.g20954 Utricularia gibba HOM05D004251 ORTHO05D005010 1.7e-157 560.1 486 63.0
PSO210G3399 Papaver somniferum HOM05D004251 ORTHO05D005010 2.2e-157 559.7 496 60.1
BraA01t02077Z Brassica rapa HOM05D004251 ORTHO05D005010 8.5e-157 557.8 494 59.3
EL10Ac6g15559 Beta vulgaris HOM05D004251 ORTHO05D005010 2.5e-156 556.2 534 56.7
PSO170G5998 Papaver somniferum HOM05D004251 ORTHO05D005010 2.5e-156 556.2 496 59.7
BcaC09g50275 Brassica carinata HOM05D004251 ORTHO05D005010 5.5e-156 555.1 495 59.4
C01p27030 Brassica napus HOM05D004251 ORTHO05D005010 5.5e-156 555.1 495 59.4
BolC1t02651H Brassica oleracea HOM05D004251 ORTHO05D005010 5.5e-156 555.1 495 59.4
CAN.G358.93 Capsicum annuum HOM05D004251 ORTHO05D005010 2.1e-155 553.1 465 63.2
AL8G23350 Arabidopsis lyrata HOM05D004251 ORTHO05D005010 3.6e-155 552.4 494 58.7
A01p21680 Brassica napus HOM05D004251 ORTHO05D005010 8.7e-154 547.7 491 58.9
Thecc.01G035500 Theobroma cacao HOM05D004251 ORTHO05D005010 8.7e-154 547.7 495 59.0
Haze_15087 Corylus avellana HOM05D004251 ORTHO05D005010 1.9e-153 546.6 548 55.8
Duzib147G1661 Durio zibethinus HOM05D004251 ORTHO05D005010 1.6e-152 543.5 494 57.7
BcaNung00241 Brassica carinata HOM05D004251 ORTHO05D005010 4.8e-152 542.0 505 56.8
Aqoxy5G01628 Aquilegia oxysepala HOM05D004251 ORTHO05D005010 2.4e-151 539.7 473 60.5
Lj1g0003281 Lotus japonicus HOM05D004251 ORTHO05D005010 4.1e-151 538.9 495 58.4
Gorai.003G014700 Gossypium raimondii HOM05D004251 ORTHO05D005010 9.1e-151 537.7 491 57.8
LjContig00448g0018994 Lotus japonicus HOM05D004251 ORTHO05D005010 2.0e-150 536.6 495 58.6
Eucgr.D01664 Eucalyptus grandis HOM05D004251 ORTHO05D005010 2.6e-150 536.2 500 57.8
CiPaw.02G018000 Carya illinoinensis HOM05D004251 ORTHO05D005010 5.0e-149 531.9 484 59.1
TPR.G24109 Trifolium pratense HOM05D004251 ORTHO05D005010 5.0e-149 531.9 486 59.3
Hma1.2p1_0400F.1_g144420 Hydrangea macrophylla HOM05D004251 ORTHO05D005010 1.4e-148 530.4 494 57.5
Ciclev10025284m.g Citrus clementina HOM05D004251 ORTHO05D005010 9.4e-148 527.7 494 57.1
FAN28G2031 Fragaria x ananassa HOM05D004251 ORTHO05D005010 4.6e-147 525.4 487 59.5
GSVIVG01018957001 Vitis vinifera HOM05D004251 ORTHO05D005010 1.1e-145 520.8 494 56.5
HPP92_017686 Vanilla planifolia HOM05D004251 ORTHO05D005010 1.7e-144 516.9 481 56.1
arahy.Tifrunner.gnm1.ann1.05783X Arachis hypogaea HOM05D004251 ORTHO05D005010 8.2e-144 514.6 495 56.6
CsaV3_6G046240 Cucumis sativus L. HOM05D004251 ORTHO05D005010 3.1e-143 512.7 496 56.9
ATR0733G178 Amborella trichopoda HOM05D004251 ORTHO05D005010 9.1e-143 511.1 475 56.6
ClCG01G019560 Citrullus lanatus HOM05D004251 ORTHO05D005010 9.1e-143 511.1 496 56.5
arahy.Tifrunner.gnm1.ann1.BIDD64 Arachis hypogaea HOM05D004251 ORTHO05D005010 1.5e-142 510.4 481 57.6
Sed0017564 Sechium edule HOM05D004251 ORTHO05D005010 2.2e-141 506.5 495 55.4
Os12g0631800 Oryza sativa ssp. japonica HOM05D004251 ORTHO05D005010 8.5e-141 504.6 477 57.2
PGR102G0408 Punica granatum HOM05D004251 ORTHO05D005010 8.5e-141 504.6 496 55.2
Zm00001eb232720 Zea mays HOM05D004251 ORTHO05D005010 2.5e-140 503.1 480 55.8
Gohir.D03G014400 Gossypium hirsutum HOM05D004251 ORTHO05D005010 5.5e-140 501.9 494 55.5
Lj2C453G4 Lonicera japonica HOM05D004251 ORTHO05D005010 2.1e-139 500.0 480 58.3
Dinv13532 Davidia involucrata HOM05D004251 ORTHO05D005010 3.6e-139 499.2 419 64.4
Nitab4.5_0001385g0110 Nicotiana tabacum HOM05D004251 ORTHO05D005010 7.4e-137 491.5 464 58.8
Phvul.003G253700 Phaseolus vulgaris HOM05D004251 ORTHO05D005010 1.4e-135 487.3 494 55.3
Prupe.7G154900 Prunus persica HOM05D004251 ORTHO05D005010 7.0e-135 485.0 495 53.3
Oeu051950.1 Olea europaea HOM05D004251 ORTHO05D005010 3.5e-134 482.6 326 76.7
Medtr1g034450 Medicago truncatula HOM05D004251 ORTHO05D005010 8.5e-133 478.0 494 53.0
Peaxi162Scf00366g00011 Petunia axillaris HOM05D004251 ORTHO05D005010 5.2e-130 468.8 510 54.3
COL.COLO4_22077 Corchorus olitorius HOM05D004251 ORTHO05D005010 8.8e-130 468.0 494 53.6
Hund13977 Selenicereus undatus HOM05D004251 ORTHO05D005010 2.7e-126 456.4 471 53.5
Pp3c15_20190 Physcomitrium patens HOM05D004251 ORTHO05D005010 4.5e-126 455.7 481 50.5
Ca_12487_v3 Cicer arietinum L. HOM05D004251 ORTHO05D005010 1.3e-125 454.1 494 51.2
BcaC09g50281 Brassica carinata HOM05D004251 ORTHO05D005010 2.1e-123 446.8 502 51.2
SMO194G0022 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 2.7e-123 446.4 477 51.8
AUR62007569 Chenopodium quinoa HOM05D004251 ORTHO05D005010 5.2e-122 442.2 474 54.6
AagrBONN_evm.TU.Sc2ySwM_228.727 Anthoceros agrestis HOM05D004251 ORTHO05D005010 9.8e-121 438.0 484 49.0
QL06p046194 Quercus lobata HOM05D004251 ORTHO05D005010 1.7e-120 437.2 774 38.1
CDE04G2049 Ceratophyllum demersum HOM05D004251 ORTHO05D005010 1.4e-119 434.1 474 52.5
TPR.G18620 Trifolium pratense HOM05D004251 ORTHO05D005010 1.4e-119 434.1 478 50.4
Mapoly0014s0043 Marchantia polymorpha HOM05D004251 ORTHO05D005010 1.5e-116 424.1 476 48.9
Ah.03g140880 Amaranthus hybridus HOM05D004251 ORTHO05D005010 1.9e-116 423.7 398 57.5
SGA_v2.0_scaffold614G53203 Striga asiatica HOM05D004251 ORTHO05D005010 9.5e-116 421.4 368 62.0
Dinv39988 Davidia involucrata HOM05D004251 ORTHO05D005010 1.6e-115 420.6 404 56.2
Atru.chr3.576 Acer truncatum HOM05D004251 ORTHO05D005010 2.8e-112 409.8 369 59.6
SMO358G0577 Selaginella moellendorffii HOM05D004251 ORTHO05D005010 1.2e-107 394.4 489 46.8
FAN23G1347 Fragaria x ananassa HOM05D004251 ORTHO05D005010 6.6e-101 372.1 462 49.1
Sc03g0002980 Simmondsia chinensis HOM05D004251 ORTHO05D005010 2.9e-96 356.7 355 56.3
Cpa.g.sc6.114 Carica papaya HOM05D004251 ORTHO05D005010 4.9e-96 355.9 495 43.4
MELO3C007827.2 Cucumis melo HOM05D004251 ORTHO05D005010 9.2e-95 351.7 496 44.6
Rhsim10G0122800 Rhododendron simsii HOM05D004251 ORTHO05D005010 1.1e-92 344.7 298 63.1
vmacro12727 Vaccinium macrocarpon HOM05D004251 ORTHO05D005010 3.3e-92 343.2 388 54.1
arahy.Tifrunner.gnm1.ann1.UBH4LM Arachis hypogaea HOM05D004251 ORTHO05D005010 1.1e-90 338.2 211 77.7
Gohir.A02G165500 Gossypium hirsutum HOM05D004251 ORTHO05D005010 3.3e-84 316.6 332 53.6
AUR62004055 Chenopodium quinoa HOM05D004251 ORTHO05D005010 4.0e-82 309.7 356 53.4
Gohir.A02G165600 Gossypium hirsutum HOM05D004251 ORTHO05D005010 5.8e-81 305.8 341 50.1
ClCG07G008380 Citrullus lanatus HOM05D004251 ORTHO05D005010 1.9e-76 290.8 204 71.6
SEGI_19545 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 3.1e-74 283.5 342 45.6
PRCOL_00003920 Prasinoderma coloniale HOM05D004251 ORTHO05D005010 1.6e-67 261.2 447 37.6
SEGI_15174 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 3.4e-49 200.3 125 76.8
vmacro12726 Vaccinium macrocarpon HOM05D004251 ORTHO05D005010 5.1e-45 186.4 124 72.6
Atru.chr3.575 Acer truncatum HOM05D004251 ORTHO05D005010 2.2e-35 154.5 106 65.1
Duzib264G0995 Durio zibethinus HOM05D004251 ORTHO05D005010 2.2e-35 154.5 105 70.5
Oeu009415.3 Olea europaea HOM05D004251 ORTHO05D005010 1.9e-31 141.4 102 69.6
Rhsim10G0122600 Rhododendron simsii HOM05D004251 ORTHO05D005010 1.4e-29 135.2 76 77.6
Hund13980 Selenicereus undatus HOM05D004251 ORTHO05D005010 1.8e-29 134.8 122 55.7
AL954U10020 Arabidopsis lyrata HOM05D004251 ORTHO05D005010 8.2e-27 125.9 88 72.7
THA.LOC104821290 Tarenaya hassleriana HOM05D004251 ORTHO05D005010 2.0e-25 121.3 130 49.2
A01p21670 Brassica napus HOM05D004251 ORTHO05D005010 3.9e-21 107.1 80 66.2
BraA01t02076Z Brassica rapa HOM05D004251 ORTHO05D005010 3.9e-21 107.1 80 66.2
AUR62004054 Chenopodium quinoa HOM05D004251 ORTHO05D005010 7.4e-20 102.8 54 83.3
Zm00001eb293990 Zea mays HOM05D004251 ORTHO05D005010 1.8e-18 98.2 133 42.9
ClCG07G008350 Citrullus lanatus HOM05D004251 ORTHO05D005010 1.6e-17 95.1 106 52.8
SEGI_32759 Sequoiadendron giganteum HOM05D004251 ORTHO05D005010 2.1e-14 84.7 79 49.4
Zm00001eb412790 Zea mays HOM05D004251 ORTHO05D005010 1.0e-13 82.4 133 41.4
Hund13979 Selenicereus undatus HOM05D004251 ORTHO05D005010 1.0e-08 65.9 103 41.7
SalBow7G0441 Salvia bowleyana HOM05D000973 ORTHO05D000652 6.5e-08 63.2 38 71.1
ClCG07G008370 Citrullus lanatus HOM05D004251 ORTHO05D005010 6.1e-06 56.6 24 100.0


User provided reference genes

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