Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 4.9e-94 347.8 180 100.0
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 5.5e-69 264.6 180 78.3
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 3.6e-68 261.9 180 76.7
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.8e-67 259.6 180 76.1
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 1.1e-66 256.9 178 77.0
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 4.1e-64 248.4 176 78.4
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 5.3e-64 248.1 178 76.4
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.5e-63 245.0 180 75.6
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 4.5e-63 245.0 186 73.7
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 4.5e-63 245.0 186 73.7
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 5.9e-63 244.6 176 77.3
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 7.7e-63 244.2 178 76.4
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.3e-62 243.4 185 75.1
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.3e-62 243.4 174 79.3
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-62 243.4 180 75.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 6.5e-62 241.1 176 75.6
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 1.1e-61 240.4 178 75.8
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.4e-61 240.0 176 76.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.4e-61 240.0 176 76.1
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 1.9e-61 239.6 185 71.9
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.9e-61 239.6 178 76.4
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.9e-61 239.6 176 71.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.5e-61 238.0 180 73.9
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 5.5e-61 238.0 200 66.5
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 7.2e-61 237.7 183 71.0
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.2e-60 236.9 186 71.5
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.6e-60 236.5 190 71.1
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.6e-60 235.3 177 72.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.6e-60 235.3 177 72.9
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.1e-60 234.6 177 72.9
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 7.9e-60 234.2 178 72.5
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 7.9e-60 234.2 187 69.0
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 5.1e-59 231.5 184 70.7
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.1e-58 230.3 176 71.6
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 2.6e-58 229.2 186 69.9
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 4.4e-58 228.4 176 75.0
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 4.4e-58 228.4 190 68.9
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.4e-58 228.4 176 72.7
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.3e-57 226.9 178 69.7
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.3e-57 226.9 176 71.0
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 3.7e-57 225.3 178 69.1
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.8e-57 224.9 176 71.6
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 1.1e-56 223.8 184 69.6
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.4e-56 223.4 172 70.3
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.4e-56 222.6 175 70.3
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.4e-56 222.6 176 71.6
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 3.1e-56 222.2 185 67.6
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 5.3e-56 221.5 177 68.4
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 5.3e-56 221.5 202 64.9
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 6.9e-56 221.1 177 68.4
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.2e-55 220.3 191 68.1
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.5e-55 219.9 133 83.5
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 2.0e-55 219.5 176 67.6
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.0e-55 219.5 182 64.8
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.4e-55 218.8 175 70.3
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.0e-54 217.2 203 63.1
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.7e-54 216.5 179 67.6
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.7e-54 216.5 176 68.8
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 3.8e-54 215.3 177 70.1
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 5.0e-54 214.9 195 65.1
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 6.5e-54 214.5 189 64.6
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.1e-53 213.8 186 65.1
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.9e-53 213.0 192 62.0
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 2.5e-53 212.6 175 64.6
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.5e-53 212.6 177 65.5
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 3.2e-53 212.2 180 66.1
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 4.2e-53 211.8 186 67.7
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 4.2e-53 211.8 186 67.7
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 4.2e-53 211.8 186 67.7
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 4.2e-53 211.8 180 66.1
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.5e-53 211.5 176 67.6
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 5.5e-53 211.5 178 67.4
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 7.2e-53 211.1 178 67.4
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 9.4e-53 210.7 185 66.5
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.2e-52 210.3 185 66.5
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 1.2e-52 210.3 177 67.8
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.2e-52 210.3 204 60.3
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 1.6e-52 209.9 185 63.8
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 2.7e-52 209.1 187 66.3
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 3.6e-52 208.8 182 66.5
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.7e-52 208.4 178 65.2
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 7.9e-52 207.6 182 67.0
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.0e-51 207.2 182 64.8
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.0e-51 207.2 177 67.2
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.8e-51 206.5 187 64.2
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.3e-51 206.1 178 64.6
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 5.2e-51 204.9 185 64.9
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 5.2e-51 204.9 185 65.4
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.2e-51 204.9 179 65.4
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.7e-51 204.5 177 67.2
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 8.8e-51 204.1 187 65.2
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.0e-50 203.0 179 64.8
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 7.4e-50 201.1 177 65.0
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.3e-49 200.3 161 71.4
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 1.7e-49 199.9 187 60.4
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.7e-49 199.9 177 64.4
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 3.7e-49 198.7 148 70.3
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 8.2e-49 197.6 185 62.7
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.4e-48 196.8 159 71.7
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.8e-48 196.4 176 64.8
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 7.0e-48 194.5 178 60.1
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 7.0e-48 194.5 194 59.8
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 2.6e-47 192.6 184 59.2
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 3.5e-47 192.2 185 62.2
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 3.5e-47 192.2 185 62.2
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 5.9e-47 191.4 183 61.7
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 7.7e-47 191.0 183 60.7
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.2e-46 189.5 120 77.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 8.5e-46 187.6 186 58.1
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.6e-44 183.3 179 60.9
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 2.3e-43 179.5 156 64.7
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 3.0e-43 179.1 176 59.7
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.7e-42 174.1 180 59.4
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.7e-41 173.3 108 82.4
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 3.7e-41 172.2 142 72.5
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 6.3e-41 171.4 178 58.4
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 5.3e-40 168.3 146 61.0
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 4.5e-39 165.2 149 64.4
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.0e-38 164.1 125 68.0
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.9e-37 159.8 91 85.7
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 2.3e-35 152.9 188 46.3
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 8.8e-35 151.0 189 47.1
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 4.4e-34 148.7 106 71.7
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 5.4e-32 141.7 102 67.6
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.7e-31 139.4 124 58.1
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 4.5e-31 138.7 132 64.4
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 5.0e-30 135.2 101 67.3
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.1e-29 134.0 101 66.3
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 7.2e-29 131.3 90 76.7
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 9.5e-29 131.0 108 61.1
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 6.1e-28 128.3 127 52.8
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.0e-27 127.5 130 53.1
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.4e-27 127.1 102 66.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 1.8e-27 126.7 106 64.2
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.4e-24 117.1 115 56.5
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 3.1e-24 115.9 104 56.7
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.8e-23 111.3 103 55.3
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 5.0e-22 108.6 106 54.7
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 6.6e-22 108.2 98 56.1
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 6.6e-22 108.2 103 56.3
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 8.6e-22 107.8 176 43.2
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.3e-21 105.5 88 69.3
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 9.5e-21 104.4 80 63.8
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 4.0e-19 99.0 71 66.2
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 8.9e-19 97.8 142 43.0
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.5e-18 97.1 147 51.0
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.2e-17 93.2 64 76.6
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 2.9e-17 92.8 101 51.5
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 4.9e-17 92.0 98 44.9
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.1e-16 90.9 67 71.6
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 3.2e-16 89.4 85 56.5
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 4.3e-13 79.0 130 34.6


User provided reference genes

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