Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055933.1 Olea europaea HOM05D005882 ORTHO05D007387 1.1e-127 459.9 225 100.0
Migut.J01232 Erythranthe guttata HOM05D005882 ORTHO05D007387 4.0e-77 292.0 246 63.8
SalBow1G1298 Salvia bowleyana HOM05D005882 ORTHO05D007387 4.4e-76 288.5 247 61.5
Dinv41550 Davidia involucrata HOM05D005882 ORTHO05D007387 1.3e-75 287.0 242 64.5
MSTRG.6078 Avicennia marina HOM05D005882 ORTHO05D007387 2.2e-75 286.2 246 63.4
DCAR_017850 Daucus carota HOM05D005882 ORTHO05D007387 5.4e-74 281.6 242 62.0
Haze_25647 Corylus avellana HOM05D005882 ORTHO05D007387 1.2e-73 280.4 248 60.9
Hma1.2p1_0018F.1_g012920 Hydrangea macrophylla HOM05D005882 ORTHO05D007387 3.5e-73 278.9 242 61.6
Haze_25642 Corylus avellana HOM05D005882 ORTHO05D007387 6.0e-73 278.1 248 60.5
Cfa003320 Carpinus fangiana HOM05D005882 ORTHO05D007387 7.8e-73 277.7 248 59.7
TAR636G3140 Trochodendron aralioides HOM05D001629 ORTHO05D003842 1.0e-72 277.3 262 59.2
arahy.Tifrunner.gnm1.ann1.G1MC5D Arachis hypogaea HOM05D005882 ORTHO05D007387 1.3e-72 276.9 246 61.0
SGA_v2.0_scaffold114G31996 Striga asiatica HOM05D005882 ORTHO05D007387 1.3e-72 276.9 265 56.6
Lj7C636G5 Lonicera japonica HOM05D005882 ORTHO05D003491 1.7e-72 276.6 242 60.7
Atru.chr7.1254 Acer truncatum HOM05D005882 ORTHO05D007387 2.3e-72 276.2 246 59.8
Nn2g11903 Nelumbo nucifera HOM05D005882 ORTHO05D007387 2.3e-72 276.2 246 59.8
CSS0039949 Camellia sinensis var. sinensis HOM05D005882 ORTHO05D007387 3.9e-72 275.4 246 59.8
CANSAT56G3469 Cannabis sativa HOM05D005882 ORTHO05D007387 3.9e-72 275.4 246 59.8
Ciclev10008577m.g Citrus clementina HOM05D005882 ORTHO05D007387 3.9e-72 275.4 246 60.2
Cc06_g09080 Coffea canephora HOM05D005882 ORTHO05D007387 3.9e-72 275.4 246 59.8
arahy.Tifrunner.gnm1.ann1.WI060A Arachis hypogaea HOM05D005882 ORTHO05D007387 6.6e-72 274.6 246 60.6
GSVIVG01015471001 Vitis vinifera HOM05D005882 ORTHO05D007387 6.6e-72 274.6 246 60.6
Psat1g026560 Pisum sativum HOM05D005882 ORTHO05D007387 1.1e-71 273.9 243 60.5
Medtr2g055010 Medicago truncatula HOM05D005882 ORTHO05D007387 1.5e-71 273.5 243 60.5
TPR.G7510 Trifolium pratense HOM05D005882 ORTHO05D007387 1.9e-71 273.1 242 60.7
BraA06t26872Z Brassica rapa HOM05D005882 ORTHO05D007387 2.5e-71 272.7 243 59.7
C07p38700 Brassica napus HOM05D005882 ORTHO05D007387 3.3e-71 272.3 242 59.9
BolC7t44391H Brassica oleracea HOM05D005882 ORTHO05D007387 3.3e-71 272.3 242 59.9
QL02p087039 Quercus lobata HOM05D005882 ORTHO05D007387 3.3e-71 272.3 247 57.9
Duzib168G0824 Durio zibethinus HOM05D005882 ORTHO05D007387 5.6e-71 271.6 246 58.9
Medtr2g054130 Medicago truncatula HOM05D005882 ORTHO05D007387 5.6e-71 271.6 242 60.3
Gohir.D05G020900 Gossypium hirsutum HOM05D005882 ORTHO05D007387 7.3e-71 271.2 246 58.5
Gorai.009G021100 Gossypium raimondii HOM05D005882 ORTHO05D007387 7.3e-71 271.2 246 58.5
Lj1g0016893 Lotus japonicus HOM05D005882 ORTHO05D007387 9.6e-71 270.8 242 60.7
TWI32G0125 Tripterygium wilfordii HOM05D005882 ORTHO05D007387 1.2e-70 270.4 246 59.3
CAN.G713.5 Capsicum annuum HOM05D005882 ORTHO05D007387 1.6e-70 270.0 246 58.9
Cpa.g.sc75.80 Carica papaya HOM05D005882 ORTHO05D007387 1.6e-70 270.0 255 58.0
Gohir.A05G019800 Gossypium hirsutum HOM05D005882 ORTHO05D007387 1.6e-70 270.0 246 58.5
Sed0000713 Sechium edule HOM05D005882 ORTHO05D007387 1.6e-70 270.0 246 59.8
Thecc.09G119200 Theobroma cacao HOM05D005882 ORTHO05D007387 2.1e-70 269.6 246 59.3
Thhalv10004416m.g Eutrema salsugineum HOM05D005882 ORTHO05D007387 2.8e-70 269.2 242 59.9
THA.LOC104811045 Tarenaya hassleriana HOM05D005882 ORTHO05D007387 3.6e-70 268.9 242 58.7
CiPaw.03G238600 Carya illinoinensis HOM05D005882 ORTHO05D007387 4.7e-70 268.5 246 58.5
COL.COLO4_34981 Corchorus olitorius HOM05D005882 ORTHO05D007387 4.7e-70 268.5 248 59.3
Manes.06G059700 Manihot esculenta HOM05D005882 ORTHO05D007387 4.7e-70 268.5 246 58.9
A06p39580 Brassica napus HOM05D005882 ORTHO05D007387 6.2e-70 268.1 242 59.1
ECA234G4294 Erigeron canadensis HOM05D003057 ORTHO05D003904 6.2e-70 268.1 246 58.1
Lalb_Chr08g0234911 Lupinus albus HOM05D005882 ORTHO05D007387 6.2e-70 268.1 242 59.9
Prupe.7G236600 Prunus persica HOM05D005882 ORTHO05D007387 6.2e-70 268.1 246 58.9
Ah.14g081090 Amaranthus hybridus HOM05D005882 ORTHO05D007387 8.1e-70 267.7 242 59.9
Sp2g18290 Schrenkiella parvula HOM05D005882 ORTHO05D007387 8.1e-70 267.7 242 59.1
vmacro23193 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 8.1e-70 267.7 242 58.3
Aqoxy7G01989 Aquilegia oxysepala HOM05D005882 ORTHO05D007387 1.1e-69 267.3 246 60.2
Rhsim08G0067200 Rhododendron simsii HOM05D005882 ORTHO05D007387 1.1e-69 267.3 246 56.5
Ca_28117_v3 Cicer arietinum L. HOM05D005882 ORTHO05D007387 1.4e-69 266.9 243 58.8
HanXRQChr10g0316701 Helianthus annuus HOM05D005882 ORTHO05D007387 1.4e-69 266.9 242 58.3
AL6G31690 Arabidopsis lyrata HOM05D005882 ORTHO05D007387 2.4e-69 266.2 248 58.1
HanXRQChr10g0316681 Helianthus annuus HOM05D005882 ORTHO05D007387 3.1e-69 265.8 242 57.9
Potri.018G073501 Populus trichocarpa HOM05D005882 ORTHO05D007387 3.1e-69 265.8 246 59.8
MELO3C025286.2 Cucumis melo HOM05D005882 ORTHO05D007387 4.0e-69 265.4 247 58.3
Rhsim08G0067400 Rhododendron simsii HOM05D005882 ORTHO05D007387 4.0e-69 265.4 246 56.9
Solyc12g006805.1 Solanum lycopersicum HOM05D005882 ORTHO05D007387 1.2e-68 263.8 242 59.1
ClCG06G010600 Citrullus lanatus HOM05D005882 ORTHO05D007387 1.5e-68 263.5 246 58.1
AT5G20140 Arabidopsis thaliana HOM05D005882 ORTHO05D007387 2.0e-68 263.1 243 58.8
Carub.0006s1852 Capsella rubella HOM05D005882 ORTHO05D007387 2.0e-68 263.1 243 59.3
AUR62011058 Chenopodium quinoa HOM05D005882 ORTHO05D007387 2.0e-68 263.1 242 60.3
Peaxi162Scf00170g00322 Petunia axillaris HOM05D005882 ORTHO05D007387 2.0e-68 263.1 242 59.9
PGSC0003DMG400001057 Solanum tuberosum HOM05D005882 ORTHO05D007387 2.0e-68 263.1 242 58.7
Phvul.009G199300 Phaseolus vulgaris HOM05D005882 ORTHO05D007387 2.6e-68 262.7 242 58.3
Sopen12g002780 Solanum pennellii HOM05D005882 ORTHO05D007387 2.6e-68 262.7 242 58.7
PSO170G5466 Papaver somniferum HOM05D005882 ORTHO05D007387 4.4e-68 261.9 242 58.3
FvH4_1g04030 Fragaria vesca HOM05D005882 ORTHO05D007387 5.8e-68 261.5 242 58.7
FAN19G1300 Fragaria x ananassa HOM05D005882 ORTHO05D007387 5.8e-68 261.5 242 58.7
FAN23G2815 Fragaria x ananassa HOM05D000145 ORTHO05D007387 5.8e-68 261.5 242 58.7
FAN26G2120 Fragaria x ananassa HOM05D000145 ORTHO05D007387 5.8e-68 261.5 242 58.7
FAN28G2467 Fragaria x ananassa HOM05D000145 ORTHO05D007387 5.8e-68 261.5 243 58.4
MD15G1178700 Malus domestica HOM05D005882 ORTHO05D007387 5.8e-68 261.5 242 58.3
CARHR192690 Cardamine hirsuta HOM05D005882 ORTHO05D007387 7.6e-68 261.2 243 57.6
Hund00886 Selenicereus undatus HOM05D005882 ORTHO05D007387 7.6e-68 261.2 246 56.5
VMungo1309G0159 Vigna mungo HOM05D005882 ORTHO05D007387 1.3e-67 260.4 242 57.4
RcHm_v2.0_Chr2g0089501 Rosa chinensis HOM05D005882 ORTHO05D007387 1.7e-67 260.0 242 58.3
CsaV3_1G031090 Cucumis sativus L. HOM05D005882 ORTHO05D007387 2.9e-67 259.2 246 57.7
unitig_21.g20470 Utricularia gibba HOM05D005882 ORTHO05D007387 3.8e-67 258.8 246 56.5
Sabra18G0062300 Salix brachista HOM05D005882 ORTHO05D007387 1.1e-66 257.3 258 56.6
AUR62033437 Chenopodium quinoa HOM05D005882 ORTHO05D007387 1.9e-66 256.5 237 60.3
PSO017G1905 Papaver somniferum HOM05D005882 ORTHO05D007387 1.9e-66 256.5 242 57.4
Sc08g0006900 Simmondsia chinensis HOM05D005882 ORTHO05D007387 3.2e-66 255.8 246 56.1
EL10Ac8g18577 Beta vulgaris HOM05D005882 ORTHO05D007387 1.6e-65 253.4 242 57.9
Os06g0597900 Oryza sativa ssp. japonica HOM05D005882 ORTHO05D007387 6.0e-65 251.5 246 55.7
QL02p087048 Quercus lobata HOM05D005882 ORTHO05D007387 6.0e-65 251.5 220 59.1
Eucgr.C01104 Eucalyptus grandis HOM05D005882 ORTHO05D007387 7.8e-65 251.1 242 56.2
HanXRQChr16g0511261 Helianthus annuus HOM05D005882 ORTHO05D007387 3.0e-64 249.2 261 54.0
Aa31LG4G12580 Aethionema arabicum HOM05D005882 ORTHO05D007387 3.9e-64 248.8 232 57.8
CDE04G0347 Ceratophyllum demersum HOM05D005882 ORTHO05D007387 5.1e-64 248.4 245 54.7
ATR0026G035 Amborella trichopoda HOM05D005882 ORTHO05D007387 3.3e-63 245.7 247 54.7
Zm00001eb385860 Zea mays HOM05D005882 ORTHO05D007387 2.1e-62 243.0 246 55.3
Glyma.06G214700 Glycine max HOM05D005882 ORTHO05D007387 1.0e-56 224.2 242 53.3
Nitab4.5_0003235g0060 Nicotiana tabacum HOM05D005882 ORTHO05D007387 1.0e-56 224.2 240 55.8
Lsat_1_v5_gn_5_97440 Lactuca sativa HOM05D005882 ORTHO05D007387 1.3e-56 223.8 260 49.6
Actinidia20308 Actinidia chinensis HOM05D005882 ORTHO05D007387 1.5e-55 220.3 246 50.8
PGR142G3773 Punica granatum HOM05D005882 ORTHO05D007387 5.8e-52 208.4 238 51.7
AUR62043908 Chenopodium quinoa HOM05D005882 ORTHO05D007387 1.2e-49 200.7 152 67.1
HanXRQChr05g0146761 Helianthus annuus HOM05D005882 ORTHO05D007387 1.8e-48 196.8 190 55.8
AagrBONN_evm.TU.Sc2ySwM_344.1814 Anthoceros agrestis HOM05D005882 ORTHO05D007387 5.6e-47 191.8 217 46.5
Mapoly0088s0023 Marchantia polymorpha HOM05D005882 ORTHO05D007387 1.6e-46 190.3 245 42.9
Nitab4.5_0006991g0050 Nicotiana tabacum HOM05D005882 ORTHO05D007387 3.7e-46 189.1 238 49.6
Pp3c4_1490 Physcomitrium patens HOM05D005882 ORTHO05D007387 8.1e-46 188.0 205 46.8
vmacro20639 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 5.3e-45 185.3 303 40.3
AUR62044155 Chenopodium quinoa HOM05D005882 ORTHO05D007387 3.8e-43 179.1 213 52.1
SMO356G0465 Selaginella moellendorffii HOM05D005882 ORTHO05D007387 5.5e-42 175.3 191 50.8
Oeu058585.1 Olea europaea HOM05D005882 ORTHO05D007387 2.7e-41 172.9 221 46.6
HPP92_002797 Vanilla planifolia HOM05D005882 ORTHO05D007387 3.0e-40 169.5 190 52.6
DCAR_017851 Daucus carota HOM05D005882 ORTHO05D007387 1.0e-35 154.5 204 45.6
ClCG06G010680 Citrullus lanatus HOM05D005882 ORTHO05D007387 2.5e-34 149.8 129 57.4
MD00G1025900 Malus domestica HOM05D005882 ORTHO05D007387 1.8e-32 143.7 179 46.9
SEGI_03752 Sequoiadendron giganteum HOM05D005882 ORTHO05D007387 3.9e-32 142.5 103 66.0
PSO170G6086 Papaver somniferum HOM05D005882 ORTHO05D007387 1.5e-31 140.6 199 42.2
vmacro23194 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 4.3e-31 139.0 247 40.1
CsaV3_1G031110 Cucumis sativus L. HOM05D005882 ORTHO05D007387 4.8e-30 135.6 130 53.8
MELO3C029668.2 Cucumis melo HOM05D005882 ORTHO05D007387 3.1e-29 132.9 126 54.8
HanXRQChr05g0148621 Helianthus annuus HOM05D005882 ORTHO05D007387 5.5e-26 122.1 174 44.3
MD00G1026800 Malus domestica HOM05D005882 ORTHO05D007387 7.2e-26 121.7 130 51.5
MCO05G652 Micromonas commoda HOM05D005882 ORTHO05D007387 3.0e-24 116.3 235 36.2
Cre06.g304400 Chlamydomonas reinhardtii HOM05D005882 ORTHO05D007387 2.0e-23 113.6 236 34.7
Cre16.g666550 Chlamydomonas reinhardtii HOM05D005882 ORTHO05D007387 4.3e-23 112.5 197 34.0
vmacro20640 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 6.3e-22 108.6 231 35.9
CBR_g37636 Chara braunii HOM05D005882 ORTHO05D007387 1.1e-21 107.8 224 35.3
vmacro20689 Vaccinium macrocarpon HOM05D005882 ORTHO05D007387 1.4e-18 97.4 204 36.8
HanXRQChr03g0064691 Helianthus annuus HOM05D005882 ORTHO05D007387 2.5e-18 96.7 74 67.6
Nn8g39344 Nelumbo nucifera HOM05D005882 ORTHO05D007387 2.6e-15 86.7 242 31.4
Sed0002298 Sechium edule HOM05D005882 ORTHO05D007387 1.3e-14 84.3 156 39.1
Duzib150G0421 Durio zibethinus HOM05D005882 ORTHO05D007387 1.3e-11 74.3 52 69.2
Sed0026247 Sechium edule HOM05D006553 ORTHO05D008070 2.2e-06 57.0 78 38.5
ClCG10G018950 Citrullus lanatus HOM05D006553 ORTHO05D008070 4.8e-06 55.8 78 38.5
Nn2g14162 Nelumbo nucifera HOM05D006553 ORTHO05D008070 4.8e-06 55.8 73 41.1
Os02g0533200 Oryza sativa ssp. japonica HOM05D006553 ORTHO05D008070 4.8e-06 55.8 82 35.4
TAR636G1909 Trochodendron aralioides HOM05D006553 ORTHO05D008070 8.2e-06 55.1 147 29.9


User provided reference genes

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