Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 0.0e+00 1250.3 653 100.0
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 5.1e-173 612.1 715 51.6
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.2e-171 607.4 707 52.1
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.4e-170 604.0 697 52.4
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 2.4e-170 603.2 704 51.8
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 2.4e-170 603.2 704 51.8
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 2.2e-168 596.7 720 52.1
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.2e-167 592.8 704 50.7
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 7.4e-156 555.1 706 47.9
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 3.4e-153 546.2 701 48.6
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 1.4e-151 540.8 650 49.7
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 4.6e-150 535.8 669 49.9
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 6.0e-150 535.4 735 47.2
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 6.0e-150 535.4 685 48.0
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 3.9e-149 532.7 677 49.0
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 3.3e-148 529.6 706 47.3
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.6e-147 527.3 708 46.8
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 2.1e-147 526.9 697 48.4
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 2.8e-147 526.6 685 46.9
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 2.8e-147 526.6 712 47.1
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 5.3e-146 522.3 666 47.3
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.2e-145 521.2 677 48.6
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.5e-145 520.8 662 48.2
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 2.0e-145 520.4 695 46.6
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 5.8e-145 518.8 692 47.0
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 5.8e-145 518.8 666 47.1
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 4.9e-144 515.8 662 47.0
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 8.4e-144 515.0 671 49.3
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.4e-143 514.2 664 46.4
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.9e-143 513.8 651 49.0
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.2e-143 512.7 700 46.9
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 7.1e-143 511.9 671 47.7
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-142 511.1 700 46.6
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 3.5e-142 509.6 635 50.9
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 3.0e-141 506.5 721 45.6
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.9e-141 506.1 706 46.3
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.5e-140 504.2 623 49.3
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.9e-140 503.8 706 47.2
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 2.2e-139 500.4 706 44.8
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.8e-139 500.0 700 46.6
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 2.8e-139 500.0 642 48.6
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 3.1e-138 496.5 715 46.4
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 4.5e-137 492.7 675 46.5
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 5.9e-137 492.3 694 46.8
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.2e-136 490.3 715 43.6
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 6.5e-136 488.8 674 46.0
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.1e-135 488.0 700 47.7
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.1e-134 483.8 699 44.5
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.1e-132 478.0 668 45.2
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.0e-132 477.2 654 46.5
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.5e-132 476.9 736 41.8
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 4.3e-132 476.1 597 49.2
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 1.8e-130 470.7 687 45.1
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.7e-128 464.2 682 45.6
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.2e-128 463.8 617 48.0
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 1.4e-127 461.1 684 44.9
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 1.9e-127 460.7 641 45.4
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 2.5e-127 460.3 645 45.7
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 2.5e-127 460.3 706 44.6
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 4.2e-127 459.5 641 46.8
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 5.5e-127 459.1 670 45.8
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 7.2e-127 458.8 646 44.9
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 1.2e-126 458.0 667 45.7
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 3.9e-125 453.0 680 45.4
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 3.9e-125 453.0 720 41.9
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 5.1e-125 452.6 678 42.9
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 6.7e-125 452.2 694 43.8
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 1.1e-124 451.4 686 43.9
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 7.4e-124 448.7 679 45.7
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 1.1e-122 444.9 716 42.7
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 1.1e-122 444.9 539 49.9
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 2.6e-121 440.3 666 44.7
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.3e-120 438.0 628 45.9
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 2.2e-120 437.2 684 43.1
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 6.5e-120 435.6 646 44.7
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.1e-119 434.9 651 44.2
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.5e-119 434.5 753 39.4
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.9e-119 434.1 678 43.2
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.5e-119 433.7 713 40.8
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 4.7e-118 429.5 603 46.3
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 3.0e-117 426.8 712 42.0
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 2.6e-113 413.7 677 42.2
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 8.0e-110 402.1 703 40.8
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 8.0e-110 402.1 728 40.2
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 7.5e-108 395.6 621 43.5
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 7.5e-108 395.6 685 41.5
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.1e-106 391.7 600 42.8
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.0e-105 387.5 619 44.3
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.7e-104 384.4 656 40.7
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 4.2e-103 379.8 613 43.7
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 4.7e-102 376.3 549 45.5
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 4.7e-102 376.3 583 43.7
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 2.3e-101 374.0 629 41.8
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 4.0e-101 373.2 536 44.8
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 2.6e-100 370.5 582 44.3
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 5.7e-100 369.4 610 43.1
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 4.9e-99 366.3 628 41.2
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 1.1e-98 365.2 682 40.2
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.1e-98 365.2 603 42.3
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 7.0e-98 362.5 691 39.7
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 9.5e-95 352.1 640 40.0
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 2.3e-93 347.4 536 44.6
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 2.3e-93 347.4 536 44.6
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 3.0e-93 347.1 552 42.8
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.4e-90 337.4 571 40.8
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 2.0e-89 334.3 556 39.9
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.0e-85 322.0 295 56.9
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 3.4e-84 317.0 706 36.7
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 4.6e-81 306.6 579 39.7
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 4.1e-74 283.5 189 73.5
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 7.3e-71 272.7 519 38.3
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 2.2e-67 261.2 460 40.7
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 8.3e-67 259.2 264 55.3
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 6.6e-64 249.6 158 83.5
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 4.3e-63 246.9 415 43.1
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 5.6e-63 246.5 266 51.9
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 8.9e-61 239.2 576 35.1
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 9.9e-60 235.7 462 39.6
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 1.7e-59 235.0 510 36.7
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 5.4e-58 229.9 142 85.9
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.2e-49 202.2 216 48.6
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 3.5e-49 200.7 279 42.3
Oeu059752.1 Olea europaea HOM05D004806 ORTHO05D005397 1.9e-47 194.9 121 81.8
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 3.8e-43 180.6 204 45.1
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 1.9e-39 168.3 428 32.7
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 2.5e-39 167.9 167 59.3
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 1.3e-38 165.6 163 57.7
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 1.6e-33 148.7 117 61.5
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 2.7e-33 147.9 219 44.3
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 3.9e-32 144.1 241 39.8
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 5.1e-32 143.7 214 40.2
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 6.7e-32 143.3 143 55.2
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.0e-28 131.7 128 59.4
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 9.3e-26 122.9 134 45.5
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 5.1e-24 117.1 156 48.7
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 9.7e-23 112.8 74 68.9
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 1.3e-22 112.5 100 59.0
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 9.0e-21 106.3 115 44.3
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 4.5e-20 104.0 141 46.8
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 7.2e-18 96.7 120 51.7
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.6e-17 94.0 87 59.8
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 4.3e-15 87.4 73 54.8
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.4e-13 82.4 72 55.6
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 7.7e-12 76.6 59 66.1
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.1e-10 72.8 68 58.8
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 1.1e-10 72.8 42 81.0
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 1.6e-09 68.9 120 34.2
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 6.1e-09 67.0 55 60.0
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 1.5e-07 62.4 56 55.4
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 3.3e-07 61.2 55 52.7


User provided reference genes

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