Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 0.0e+00 1340.5 671 100.0
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 3.4e-140 503.1 696 46.3
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 3.0e-104 383.6 696 38.1
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 8.5e-99 365.5 690 37.1
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 8.0e-97 359.0 706 37.1
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 5.7e-95 352.8 690 36.5
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 1.2e-92 345.1 686 36.2
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.7e-92 342.4 686 36.6
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 1.0e-91 342.0 709 34.6
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 4.2e-90 336.7 738 36.6
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.2e-89 335.1 772 34.3
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.0e-88 332.0 715 36.4
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 1.2e-87 328.6 723 35.4
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 2.0e-87 327.8 701 37.5
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.6e-87 327.4 667 36.1
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 4.8e-86 323.2 714 36.7
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.8e-85 321.2 750 36.1
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.2e-84 318.5 748 34.2
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.5e-84 316.6 752 35.1
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 4.5e-84 316.6 725 34.1
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.0e-83 315.5 726 35.8
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.0e-83 315.5 390 46.2
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 2.2e-83 314.3 546 40.5
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 3.2e-82 310.5 727 34.7
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 4.2e-82 310.1 554 37.9
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 4.2e-82 310.1 728 34.1
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.2e-81 308.5 730 34.0
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 3.0e-80 303.9 461 41.6
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 4.4e-79 300.1 715 31.2
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.8e-77 294.7 686 36.9
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 3.5e-76 290.4 752 32.6
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.7e-75 288.1 552 37.1
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 6.1e-73 279.6 556 36.9
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 8.0e-73 279.3 766 32.6
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.4e-72 278.5 430 41.2
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 4.4e-71 273.5 729 32.4
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.7e-70 271.6 689 34.0
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.8e-69 268.1 768 31.8
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.6e-68 265.0 585 34.0
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 3.5e-68 263.8 698 32.5
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.5e-66 257.7 509 37.9
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 3.3e-66 257.3 719 31.4
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.2e-65 255.4 547 35.5
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 5.2e-64 250.0 634 33.0
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.4e-61 241.1 478 36.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 2.3e-59 234.6 683 30.3
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 3.9e-59 233.8 516 36.2
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 5.0e-59 233.4 728 29.9
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 2.5e-58 231.1 688 31.5
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.6e-57 228.4 725 30.1
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 8.9e-56 222.6 555 34.4
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 8.9e-56 222.6 444 33.8
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 1.5e-55 221.9 725 29.8
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 9.8e-55 219.2 741 32.8
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 4.9e-54 216.9 561 32.4
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 6.4e-54 216.5 572 31.8
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 3.2e-53 214.2 554 31.9
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.3e-51 208.0 390 34.1
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 5.1e-51 206.8 398 37.7
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 5.6e-50 203.4 478 34.1
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.2e-49 202.2 554 31.6
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 1.4e-48 198.7 566 31.3
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 6.8e-48 196.4 414 35.3
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.5e-47 195.3 731 28.2
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 4.4e-47 193.7 722 29.1
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 7.6e-47 193.0 720 28.3
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.2e-46 191.4 423 33.8
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.1e-45 189.1 474 32.5
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.1e-45 189.1 707 28.7
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.1e-45 189.1 461 34.5
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.9e-45 188.3 712 29.9
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 3.2e-45 187.6 761 26.9
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 2.7e-44 184.5 439 34.4
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 6.0e-44 183.3 505 30.9
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 7.8e-44 183.0 706 29.6
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 2.3e-43 181.4 324 36.1
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 3.3e-42 177.6 763 25.7
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 5.2e-40 170.2 766 26.4
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.2e-40 170.2 248 38.3
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.5e-39 168.7 540 30.2
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 2.9e-38 164.5 552 30.6
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.4e-37 162.2 226 42.5
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.6e-36 158.7 712 26.0
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 1.6e-36 158.7 228 43.9
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 4.6e-36 157.1 379 32.7
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 1.0e-35 156.0 379 32.7
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 1.3e-35 155.6 385 35.3
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 3.0e-35 154.5 587 28.1
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 1.8e-32 145.2 646 26.2
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 2.6e-31 141.4 226 39.8
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 5.8e-31 140.2 659 29.0
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 2.9e-30 137.9 296 33.4
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 4.9e-30 137.1 402 31.1
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 4.2e-29 134.0 465 29.5
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 3.5e-28 131.0 296 32.4
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.9e-26 125.2 231 36.8
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 4.3e-26 124.0 403 30.8
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 4.9e-22 110.5 315 30.5
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.4e-21 108.2 428 27.1
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 2.4e-21 108.2 295 34.6
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 4.2e-21 107.5 401 27.9
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 9.3e-21 106.3 315 28.6
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.2e-20 105.9 433 26.8
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 2.1e-20 105.1 346 28.6
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 3.5e-20 104.4 403 28.3
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.0e-19 102.8 313 28.1
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.0e-19 102.8 208 35.1
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 6.7e-19 100.1 374 28.1
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.3e-17 95.9 328 25.9
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 2.8e-17 94.7 397 27.2
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 1.4e-16 92.4 319 28.8
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 5.3e-16 90.5 205 31.2
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 5.3e-16 90.5 392 29.3
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 9.0e-16 89.7 329 27.4
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 9.0e-16 89.7 329 27.4
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.2e-15 89.4 398 26.1
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.2e-15 89.4 398 26.1
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.2e-15 89.4 328 27.7
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.2e-15 89.4 398 26.1
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 3.4e-15 87.8 315 26.7
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 5.8e-15 87.0 227 30.8
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 5.8e-15 87.0 101 41.6
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 2.2e-14 85.1 311 26.0
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 2.2e-14 85.1 311 26.0
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 1.0e-11 76.3 285 26.0
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 1.3e-11 75.9 358 25.1
Zm00001eb342970 Zea mays HOM05D024721 ORTHO05D025980 6.7e-11 73.6 214 29.4
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 3.3e-10 71.2 81 39.5
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 2.8e-09 68.2 190 30.5
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 3.7e-09 67.8 279 26.2
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 3.7e-09 67.8 279 26.2
Os05g0552100 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 1.1e-08 66.2 283 25.1
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 5.3e-08 63.9 77 40.3
SEGI_13389 Sequoiadendron giganteum HOM05D007001 ORTHO05D005587 2.6e-07 61.6 89 40.4
ATR0568G035 Amborella trichopoda HOM05D007001 ORTHO05D005587 4.5e-07 60.8 100 34.0
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 7.6e-07 60.1 55 49.1
MBI16_g35576_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.2e-06 58.5 94 35.1
unitig_37.g12820 Utricularia gibba HOM05D007001 ORTHO05D005587 2.2e-06 58.5 79 36.7
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 3.8e-06 57.8 233 27.5


User provided reference genes

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