Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 7.6e-98 360.5 187 100.0
Oeu050407.1 Olea europaea HOM05D012176 ORTHO05D014468 1.2e-71 273.5 185 77.8
Migut.J00709 Erythranthe guttata HOM05D012176 ORTHO05D002052 1.2e-29 134.0 179 40.2
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 5.4e-27 125.2 187 38.5
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 6.0e-26 121.7 178 39.9
MSTRG.5900 Avicennia marina HOM05D012176 ORTHO05D014468 1.1e-22 110.9 186 35.5
Nitab4.5_0002958g0020 Nicotiana tabacum HOM05D012176 ORTHO05D014468 3.1e-22 109.4 185 31.9
Nitab4.5_0000020g0110 Nicotiana tabacum HOM05D012176 ORTHO05D014468 1.2e-21 107.5 187 29.9
Migut.B00865 Erythranthe guttata HOM05D012176 ORTHO05D014468 3.2e-19 99.4 189 34.4
Dinv31752 Davidia involucrata HOM05D002687 ORTHO05D022209 9.2e-19 97.8 189 33.3
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 1.2e-18 97.4 184 31.5
Actinidia32046 Actinidia chinensis HOM05D000182 ORTHO05D000112 4.6e-18 95.5 171 35.7
Oeu052622.2 Olea europaea HOM05D022101 ORTHO05D022209 6.0e-18 95.1 189 30.2
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 7.8e-18 94.7 191 35.6
Thecc.05G103000 Theobroma cacao HOM05D008136 ORTHO05D002052 2.3e-17 93.2 186 30.6
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 3.0e-17 92.8 170 31.2
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 5.1e-17 92.0 186 31.2
Carub.0005s1885 Capsella rubella HOM05D008136 ORTHO05D002052 8.6e-17 91.3 188 30.9
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 1.5e-16 90.5 186 31.2
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 1.9e-16 90.1 188 31.4
Duzib106G1810 Durio zibethinus HOM05D008136 ORTHO05D002052 1.9e-16 90.1 184 29.9
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 2.5e-16 89.7 188 31.9
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 1.2e-15 87.4 188 30.9
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 1.2e-15 87.4 188 30.3
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 1.2e-15 87.4 188 30.9
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 1.2e-15 87.4 188 30.9
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 1.2e-15 87.4 188 30.3
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 2.1e-15 86.7 183 29.5
Cc06_g06470 Coffea canephora HOM05D022101 ORTHO05D022209 2.8e-15 86.3 174 32.8
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 4.7e-15 85.5 188 28.7
Sp5g09840 Schrenkiella parvula HOM05D008136 ORTHO05D002052 4.7e-15 85.5 188 30.3
PGSC0003DMG400016421 Solanum tuberosum HOM05D012176 ORTHO05D014468 4.7e-15 85.5 182 28.0
MSTRG.19312 Avicennia marina HOM05D012176 ORTHO05D014468 8.1e-15 84.7 166 28.9
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 1.4e-14 84.0 188 29.3
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.4e-14 84.0 180 32.2
AL5G33110 Arabidopsis lyrata HOM05D008136 ORTHO05D002052 2.3e-14 83.2 188 29.8
BcaC06g32916 Brassica carinata HOM05D008136 ORTHO05D002052 3.1e-14 82.8 188 29.8
DCAR_003063 Daucus carota HOM05D008136 ORTHO05D014468 3.1e-14 82.8 191 27.7
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 5.2e-14 82.0 184 31.0
COL.COLO4_29586 Corchorus olitorius HOM05D008136 ORTHO05D002052 6.8e-14 81.6 183 29.5
BcaC06g33391 Brassica carinata HOM05D008136 ORTHO05D002052 5.8e-13 78.6 188 28.7
C07p46980 Brassica napus HOM05D008136 ORTHO05D002052 5.8e-13 78.6 188 28.7
BolC7t45215H Brassica oleracea HOM05D008136 ORTHO05D002052 5.8e-13 78.6 188 28.7
BraA03t13990Z Brassica rapa HOM05D008136 ORTHO05D002052 7.6e-13 78.2 188 28.2
ClCG10G018400 Citrullus lanatus HOM05D008136 ORTHO05D002052 9.9e-13 77.8 167 27.5
A03p48880 Brassica napus HOM05D008136 ORTHO05D002052 3.7e-12 75.9 188 28.2
Potri.016G071200 Populus trichocarpa HOM05D038355 ORTHO05D002052 4.9e-12 75.5 185 25.4
Haze_19713 Corylus avellana HOM05D008136 ORTHO05D002052 6.4e-12 75.1 188 28.7
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 1.1e-11 74.3 155 27.1
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 1.1e-11 74.3 189 27.0
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-11 73.6 162 31.5
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 2.4e-11 73.2 187 26.2
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 3.2e-11 72.8 167 25.7
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 4.1e-11 72.4 178 33.1
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 7.1e-11 71.6 193 31.1
Cfa016687 Carpinus fangiana HOM05D008136 ORTHO05D002052 1.2e-10 70.9 189 28.0
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.6e-10 70.5 169 28.4
QL07p036911 Quercus lobata HOM05D008136 ORTHO05D002052 2.1e-10 70.1 171 31.6
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 2.7e-10 69.7 157 28.7
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 2.7e-10 69.7 178 31.5
Nn2g14283 Nelumbo nucifera HOM05D002687 ORTHO05D002052 3.5e-10 69.3 182 26.4
Ciclev10013330m.g Citrus clementina HOM05D015120 ORTHO05D010666 4.6e-10 68.9 188 31.4
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 4.6e-10 68.9 186 24.2
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 6.0e-10 68.6 168 27.4
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 6.0e-10 68.6 178 27.0
Oeu009048.1 Olea europaea HOM05D002687 ORTHO05D002052 7.8e-10 68.2 171 28.1
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.7e-09 67.0 166 28.9
CiPaw.09G020400 Carya illinoinensis HOM05D008136 ORTHO05D002052 2.3e-09 66.6 188 28.2
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 2.3e-09 66.6 164 26.2
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.3e-09 66.6 175 28.0
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 3.9e-09 65.9 167 26.9
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 3.9e-09 65.9 154 28.6
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 3.9e-09 65.9 149 29.5
RcHm_v2.0_Chr3g0475751 Rosa chinensis HOM05D009874 ORTHO05D010825 3.9e-09 65.9 143 32.2
FvH4_6g20210 Fragaria vesca HOM05D009874 ORTHO05D010825 5.1e-09 65.5 147 31.3
FAN14G2012 Fragaria x ananassa HOM05D009874 ORTHO05D010825 5.1e-09 65.5 147 31.3
Cpa.g.sc104.41 Carica papaya HOM05D015120 ORTHO05D010825 6.6e-09 65.1 162 29.6
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 6.6e-09 65.1 183 24.0
FAN05G5202 Fragaria x ananassa HOM05D009874 ORTHO05D010825 6.6e-09 65.1 148 30.4
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 6.6e-09 65.1 185 27.6
Prupe.7G096800 Prunus persica HOM05D009874 ORTHO05D010825 8.6e-09 64.7 158 29.1
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.1e-08 64.3 170 24.7
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 1.1e-08 64.3 170 24.7
Ciclev10013405m.g Citrus clementina HOM05D008136 ORTHO05D002052 1.1e-08 64.3 184 28.3
COL.COLO4_32398 Corchorus olitorius HOM05D010991 ORTHO05D010825 1.1e-08 64.3 190 27.4
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 1.1e-08 64.3 182 28.0
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.1e-08 64.3 162 29.0
Aqoxy1G00678 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 1.5e-08 63.9 185 28.6
MELO3C014517.2 Cucumis melo HOM05D002687 ORTHO05D002052 1.5e-08 63.9 174 28.2
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.5e-08 63.9 167 24.0
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 1.5e-08 63.9 155 27.7
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.9e-08 63.5 174 27.6
FAN14G3199 Fragaria x ananassa HOM05D029328 ORTHO05D002052 1.9e-08 63.5 159 29.6
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 1.9e-08 63.5 170 25.3
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.9e-08 63.5 167 24.0
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 1.9e-08 63.5 186 24.7
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.9e-08 63.5 182 29.1
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 1.9e-08 63.5 174 28.2
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-08 63.5 161 31.1
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-08 63.5 161 31.1
Ca_09051_v3 Cicer arietinum L. HOM05D008136 ORTHO05D002052 2.5e-08 63.2 175 30.9
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 2.5e-08 63.2 164 27.4
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 3.3e-08 62.8 177 29.4
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 3.3e-08 62.8 175 28.0
FAN14G1910 Fragaria x ananassa HOM05D010052 ORTHO05D010666 3.3e-08 62.8 170 27.1
MD12G1039000 Malus domestica HOM05D009874 ORTHO05D010825 3.3e-08 62.8 161 28.0
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 4.3e-08 62.4 169 25.4
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 4.3e-08 62.4 173 24.9
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 5.6e-08 62.0 180 30.0
Glyma.13G313600 Glycine max HOM05D002687 ORTHO05D002052 5.6e-08 62.0 183 24.0
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 5.6e-08 62.0 178 26.4
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 5.6e-08 62.0 171 24.6
QL07p036935 Quercus lobata HOM05D002687 ORTHO05D002052 7.3e-08 61.6 182 30.2
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 7.3e-08 61.6 150 26.7
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 7.3e-08 61.6 150 26.7
arahy.Tifrunner.gnm1.ann1.AI123M Arachis hypogaea HOM05D002687 ORTHO05D002052 9.6e-08 61.2 174 27.6
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 9.6e-08 61.2 178 26.4
TPR.G35558 Trifolium pratense HOM05D008136 ORTHO05D002052 1.2e-07 60.8 178 25.8
CsaV3_6G038540 Cucumis sativus L. HOM05D002687 ORTHO05D002052 1.6e-07 60.5 174 26.4
FAN05G0496 Fragaria x ananassa HOM05D009874 ORTHO05D010825 1.6e-07 60.5 147 29.3
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 1.6e-07 60.5 167 29.9
ClCG02G022410 Citrullus lanatus HOM05D002687 ORTHO05D002052 2.1e-07 60.1 174 25.9
Glyma.10G080800 Glycine max HOM05D008136 ORTHO05D002052 2.1e-07 60.1 188 25.5
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 2.1e-07 60.1 185 25.4
Atru.chr8.1380 Acer truncatum HOM05D008136 ORTHO05D002052 2.8e-07 59.7 184 25.5
Sopen01g003190 Solanum pennellii HOM05D012176 ORTHO05D014468 2.8e-07 59.7 157 28.7
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 3.6e-07 59.3 158 27.2
Prupe.7G096300 Prunus persica HOM05D010052 ORTHO05D010666 3.6e-07 59.3 184 27.7
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 4.7e-07 58.9 183 24.6
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 4.7e-07 58.9 175 26.3
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 4.7e-07 58.9 179 24.6
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 6.2e-07 58.5 182 25.3
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 6.2e-07 58.5 182 25.3
MD14G1037800 Malus domestica HOM05D010052 ORTHO05D010666 6.2e-07 58.5 200 26.0
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 8.1e-07 58.2 176 25.0
TAR636G1837 Trochodendron aralioides HOM05D002687 ORTHO05D002052 8.1e-07 58.2 174 24.1
MSTRG.12384 Avicennia marina HOM05D002687 ORTHO05D002052 1.1e-06 57.8 181 26.5
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 1.1e-06 57.8 168 26.2
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.1e-06 57.8 150 25.3
Aqoxy1G00677 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 1.4e-06 57.4 174 25.9
Thecc.01G085100 Theobroma cacao HOM05D015120 ORTHO05D010666 1.4e-06 57.4 149 27.5
AT2G27260 Arabidopsis thaliana HOM05D002687 ORTHO05D002052 1.8e-06 57.0 175 25.1
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 1.8e-06 57.0 187 28.3
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 1.8e-06 57.0 185 23.8
ClCG01G011580 Citrullus lanatus HOM05D002687 ORTHO05D034712 2.4e-06 56.6 136 26.5
VMungo0720G0515 Vigna mungo HOM05D008136 ORTHO05D002052 2.4e-06 56.6 175 27.4
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 3.1e-06 56.2 180 23.3
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 3.1e-06 56.2 186 25.3
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 3.1e-06 56.2 191 26.7
Cpa.g.sc129.12 Carica papaya HOM05D015120 ORTHO05D010666 4.0e-06 55.8 158 26.6
CiPaw.10G016800 Carya illinoinensis HOM05D008136 ORTHO05D002052 4.0e-06 55.8 164 26.2
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 4.0e-06 55.8 186 25.3
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 4.0e-06 55.8 186 24.7
Atru.chr8.1376 Acer truncatum HOM05D015120 ORTHO05D010666 5.2e-06 55.5 149 28.9
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 5.2e-06 55.5 156 25.0
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 5.2e-06 55.5 156 25.0
VMungo0720G1813 Vigna mungo HOM05D013176 ORTHO05D010666 5.2e-06 55.5 159 23.3
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 6.8e-06 55.1 156 24.4
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 6.8e-06 55.1 173 26.6
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 6.8e-06 55.1 156 24.4
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 6.8e-06 55.1 156 24.4
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 6.8e-06 55.1 173 26.6
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 6.8e-06 55.1 176 26.7
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 8.9e-06 54.7 173 26.6


User provided reference genes

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