Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 3.6e-73 279.6 394 100.0
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 9.6e-26 122.1 107 57.0
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 4.8e-25 119.8 120 51.7
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 6.2e-25 119.4 107 56.1
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 3.1e-24 117.1 118 51.7
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 3.4e-23 113.6 100 56.0
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 9.9e-23 112.1 108 51.9
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 4.9e-22 109.8 110 48.2
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 4.9e-22 109.8 110 48.2
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 6.4e-22 109.4 110 48.2
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 2.5e-21 107.5 108 49.1
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 3.2e-21 107.1 77 63.6
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 5.5e-21 106.3 110 46.4
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 2.7e-20 104.0 126 44.4
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.0e-19 102.1 126 45.2
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 1.8e-19 101.3 77 62.3
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 1.8e-19 101.3 77 62.3
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 3.9e-19 100.1 126 44.4
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 4.3e-18 96.7 108 40.7
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 5.6e-18 96.3 108 39.8
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 1.6e-17 94.7 136 44.1
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 8.2e-17 92.4 108 39.8
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 8.2e-17 92.4 131 35.9
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 8.2e-17 92.4 67 61.2
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 1.1e-16 92.0 100 47.0
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 1.4e-16 91.7 103 46.6
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 1.8e-16 91.3 62 72.6
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 1.8e-16 91.3 62 72.6
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 4.0e-16 90.1 64 64.1
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 4.0e-16 90.1 115 41.7
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 5.3e-16 89.7 108 39.8
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 6.9e-16 89.4 108 39.8
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 6.9e-16 89.4 61 68.9
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 9.0e-16 89.0 108 38.9
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 9.0e-16 89.0 108 38.9
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 1.2e-15 88.6 108 38.9
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 1.2e-15 88.6 77 57.1
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 2.0e-15 87.8 112 40.2
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 4.5e-15 86.7 60 58.3
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 1.0e-14 85.5 68 57.4
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 1.3e-14 85.1 63 63.5
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 1.7e-14 84.7 66 59.1
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 2.2e-14 84.3 72 54.2
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 2.2e-14 84.3 96 45.8
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 4.9e-14 83.2 79 53.2
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 4.9e-14 83.2 79 53.2
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 6.5e-14 82.8 82 51.2
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 1.4e-13 81.6 84 51.2
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 1.9e-13 81.3 108 40.7
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 4.2e-13 80.1 70 55.7
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 7.1e-13 79.3 58 63.8
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 7.1e-13 79.3 59 61.0
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 9.3e-13 79.0 71 52.1
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 1.6e-12 78.2 118 40.7
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 2.1e-12 77.8 54 68.5
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 3.5e-12 77.0 65 60.0
Migut.F00108 Erythranthe guttata HOM05D007456 ORTHO05D009411 3.0e-11 73.9 69 55.1
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 3.0e-11 73.9 63 57.1
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 3.9e-11 73.6 65 55.4
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 5.1e-11 73.2 66 54.5
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 5.1e-11 73.2 60 60.0
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 6.7e-11 72.8 153 31.4
BcaC02g09522 Brassica carinata HOM05D007456 ORTHO05D009411 1.9e-10 71.2 84 38.1
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 2.5e-10 70.9 53 64.2
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 4.3e-10 70.1 73 54.8
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 5.7e-10 69.7 61 54.1
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 9.7e-10 68.9 132 29.5
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 1.3e-09 68.6 75 46.7
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.3e-09 68.6 72 48.6
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 1.6e-09 68.2 48 66.7
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 2.8e-09 67.4 45 60.0
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 3.7e-09 67.0 48 64.6
Haze_00583 Corylus avellana HOM05D007456 ORTHO05D009411 3.7e-09 67.0 46 65.2
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 3.7e-09 67.0 52 61.5
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 4.8e-09 66.6 110 32.7
Cfa015911 Carpinus fangiana HOM05D007456 ORTHO05D009411 1.1e-08 65.5 46 65.2
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 2.4e-08 64.3 106 33.0
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 2.4e-08 64.3 91 36.3
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 2.4e-08 64.3 106 34.0
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 2.4e-08 64.3 106 34.0
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 3.1e-08 63.9 91 35.2
Ciclev10011504m.g Citrus clementina HOM05D007456 ORTHO05D009411 4.1e-08 63.5 65 49.2
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 4.1e-08 63.5 53 54.7
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 5.3e-08 63.2 108 35.2
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 6.9e-08 62.8 108 35.2
CANSAT25G1867 Cannabis sativa HOM05D003056 ORTHO05D003422 1.2e-07 62.0 101 34.7
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 1.5e-07 61.6 106 33.0
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 1.5e-07 61.6 99 37.4
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 2.0e-07 61.2 106 34.0
Lalb_Chr06g0171381 Lupinus albus HOM05D000855 ORTHO05D008530 2.0e-07 61.2 106 33.0
CANSAT54G1256 Cannabis sativa HOM05D007456 ORTHO05D028426 2.6e-07 60.8 44 59.1
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 2.6e-07 60.8 124 33.1
Actinidia34380 Actinidia chinensis HOM05D003056 ORTHO05D003422 3.4e-07 60.5 98 36.7
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 3.4e-07 60.5 108 35.2
Potri.001G297300 Populus trichocarpa HOM05D003056 ORTHO05D003422 3.4e-07 60.5 113 33.6
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 4.5e-07 60.1 106 33.0
Cc06_g03530 Coffea canephora HOM05D000855 ORTHO05D008530 4.5e-07 60.1 106 31.1
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 4.5e-07 60.1 115 30.4
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 4.5e-07 60.1 106 30.2
CANSAT80G1453 Cannabis sativa HOM05D000855 ORTHO05D008530 5.9e-07 59.7 106 31.1
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 5.9e-07 59.7 115 30.4
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 5.9e-07 59.7 106 31.1
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 7.7e-07 59.3 108 34.3
Mapoly0064s0021 Marchantia polymorpha HOM05D000001 ORTHO05D254879 7.7e-07 59.3 103 28.2
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 1.0e-06 58.9 108 33.3
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 1.0e-06 58.9 108 30.6
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 1.0e-06 58.9 106 33.0
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 1.0e-06 58.9 99 36.4
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 1.3e-06 58.5 105 33.3
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 1.3e-06 58.5 106 31.1
Actinidia23531 Actinidia chinensis HOM05D000424 ORTHO05D038032 1.7e-06 58.2 106 32.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.7e-06 58.2 125 25.6
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.7e-06 58.2 110 30.0
EL10Ac8g19354 Beta vulgaris HOM05D001121 ORTHO05D003422 1.7e-06 58.2 99 30.3
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 1.7e-06 58.2 115 30.4
Gohir.A04G117500 Gossypium hirsutum HOM05D000001 ORTHO05D001705 1.7e-06 58.2 99 29.3
Gohir.A06G047500 Gossypium hirsutum HOM05D000424 ORTHO05D009589 1.7e-06 58.2 131 29.8
Medtr7g070170 Medicago truncatula HOM05D018871 ORTHO05D019812 1.7e-06 58.2 86 34.9
Nn7g38398 Nelumbo nucifera HOM05D000001 ORTHO05D010268 1.7e-06 58.2 100 34.0
Oeu060332.1 Olea europaea HOM05D000001 ORTHO05D000003 1.7e-06 58.2 113 29.2
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.7e-06 58.2 99 37.4
TAR625G0475 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.7e-06 58.2 106 33.0
Aqoxy1G00157 Aquilegia oxysepala HOM05D000001 ORTHO05D010412 2.2e-06 57.8 103 31.1
Cfa004621 Carpinus fangiana HOM05D003056 ORTHO05D003422 2.2e-06 57.8 99 33.3
Cc02_g19560 Coffea canephora HOM05D003056 ORTHO05D003422 2.2e-06 57.8 101 33.7
SalBow2G2076 Salvia bowleyana HOM05D003056 ORTHO05D003422 2.2e-06 57.8 101 33.7
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 2.2e-06 57.8 99 36.4
CiPaw.02G077000 Carya illinoinensis HOM05D000855 ORTHO05D008530 2.9e-06 57.4 106 32.1
Cc06_g08590 Coffea canephora HOM05D000001 ORTHO05D009097 2.9e-06 57.4 113 34.5
COL.COLO4_32549 Corchorus olitorius HOM05D003056 ORTHO05D003422 2.9e-06 57.4 101 33.7
MELO3C029427.2 Cucumis melo HOM05D000001 ORTHO05D001705 2.9e-06 57.4 129 26.4
DCAR_001397 Daucus carota HOM05D000001 ORTHO05D000003 2.9e-06 57.4 117 30.8
Lalb_Chr13g0296151 Lupinus albus HOM05D000001 ORTHO05D010412 2.9e-06 57.4 101 30.7
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 2.9e-06 57.4 106 27.4
HPP92_023347 Vanilla planifolia HOM05D001779 ORTHO05D001753 2.9e-06 57.4 90 34.4
Ah.14g085500 Amaranthus hybridus HOM05D001121 ORTHO05D001256 3.8e-06 57.0 99 30.3
AagrBONN_evm.TU.Sc2ySwM_344.5474 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.8e-06 57.0 103 28.2
Cc02_g15740 Coffea canephora HOM05D000001 ORTHO05D006238 3.8e-06 57.0 120 25.8
FAN16G3320 Fragaria x ananassa HOM05D000001 ORTHO05D010412 3.8e-06 57.0 117 26.5
Nn8g39987 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.8e-06 57.0 121 28.9
PRCOL_00002211 Prasinoderma coloniale HOM05D001779 ORTHO05D050587 3.8e-06 57.0 104 28.8
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 3.8e-06 57.0 106 31.1
Hund09765 Selenicereus undatus HOM05D007456 ORTHO05D009411 3.8e-06 57.0 50 50.0
Aqoxy2G03777 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 5.0e-06 56.6 113 32.7
EL10Ac2g03613 Beta vulgaris HOM05D000001 ORTHO05D000003 5.0e-06 56.6 135 27.4
FvH4_3g44710 Fragaria vesca HOM05D000001 ORTHO05D010412 5.0e-06 56.6 117 28.2
FAN11G3940 Fragaria x ananassa HOM05D000001 ORTHO05D010412 5.0e-06 56.6 117 28.2
Lj3A692T59 Lonicera japonica HOM05D000001 ORTHO05D000003 5.0e-06 56.6 99 33.3
Phvul.008G006600 Phaseolus vulgaris HOM05D008684 ORTHO05D010796 5.0e-06 56.6 100 31.0
TPR.G9573 Trifolium pratense HOM05D000001 ORTHO05D010412 5.0e-06 56.6 106 30.2
GSVIVG01022208001 Vitis vinifera HOM05D000001 ORTHO05D000003 5.0e-06 56.6 108 31.5
A03p13560 Brassica napus HOM05D000001 ORTHO05D009857 6.5e-06 56.2 135 26.7
CSS0006525 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010412 6.5e-06 56.2 117 28.2
CARHR194540 Cardamine hirsuta HOM05D007660 ORTHO05D009442 6.5e-06 56.2 95 38.9
Cfa011135 Carpinus fangiana HOM05D000001 ORTHO05D000003 6.5e-06 56.2 109 33.9
Duzib093G1875 Durio zibethinus HOM05D000855 ORTHO05D008530 6.5e-06 56.2 108 31.5
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 6.5e-06 56.2 149 26.8
Eucgr.I00931 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.5e-06 56.2 107 28.0
FvH4_2g04590 Fragaria vesca HOM05D003056 ORTHO05D003422 6.5e-06 56.2 110 33.6
FAN15G3015 Fragaria x ananassa HOM05D003056 ORTHO05D003422 6.5e-06 56.2 110 33.6
HanXRQChr16g0516391 Helianthus annuus HOM05D002244 ORTHO05D002269 6.5e-06 56.2 94 31.9
Lsat_1_v5_gn_8_137340 Lactuca sativa HOM05D000001 ORTHO05D000003 6.5e-06 56.2 123 28.5
SMO356G0401 Selaginella moellendorffii HOM05D007128 ORTHO05D000761 6.5e-06 56.2 105 34.3
Sc11g0005870 Simmondsia chinensis HOM05D000001 ORTHO05D000003 6.5e-06 56.2 103 28.2
GSVIVG01025389001 Vitis vinifera HOM05D000001 ORTHO05D010412 6.5e-06 56.2 117 29.1
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 8.5e-06 55.8 92 34.8
Gohir.D04G159200 Gossypium hirsutum HOM05D000001 ORTHO05D001705 8.5e-06 55.8 106 27.4
Gorai.012G146600 Gossypium raimondii HOM05D000001 ORTHO05D001705 8.5e-06 55.8 106 27.4
MD17G1272300 Malus domestica HOM05D000001 ORTHO05D000003 8.5e-06 55.8 106 31.1
Oeu026572.1 Olea europaea HOM05D007456 ORTHO05D009411 8.5e-06 55.8 33 81.8
RcHm_v2.0_Chr5g0012881 Rosa chinensis HOM05D000001 ORTHO05D000003 8.5e-06 55.8 97 30.9
RcHm_v2.0_Chr6g0254201 Rosa chinensis HOM05D003056 ORTHO05D003422 8.5e-06 55.8 110 33.6
SEGI_05147 Sequoiadendron giganteum HOM05D000001 ORTHO05D001705 8.5e-06 55.8 103 27.2
SEGI_09862 Sequoiadendron giganteum HOM05D006106 ORTHO05D007662 8.5e-06 55.8 107 29.0
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 8.5e-06 55.8 92 34.8


User provided reference genes

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