Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055036.1 Olea europaea HOM05D000749 ORTHO05D004893 9.3e-75 283.5 147 100.0
SalBow1G2130 Salvia bowleyana HOM05D000749 ORTHO05D004893 4.0e-25 118.6 130 56.9
SalBow1G3781 Salvia bowleyana HOM05D000749 ORTHO05D004893 5.2e-25 118.2 130 56.9
MSTRG.25680 Avicennia marina HOM05D000749 ORTHO05D004893 1.4e-22 110.2 76 75.0
SGA_v2.0_scaffold305G47986 Striga asiatica HOM05D000749 ORTHO05D004893 1.2e-21 107.1 76 77.6
PGSC0003DMG400012276 Solanum tuberosum HOM05D000749 ORTHO05D004893 1.6e-21 106.7 76 73.7
Solyc08g082430.4 Solanum lycopersicum HOM05D000749 ORTHO05D004893 3.5e-21 105.5 76 72.4
Sopen08g030680 Solanum pennellii HOM05D000749 ORTHO05D004893 5.9e-21 104.8 76 72.4
Nitab4.5_0001210g0090 Nicotiana tabacum HOM05D000749 ORTHO05D004893 7.7e-21 104.4 76 71.1
Nitab4.5_0006775g0090 Nicotiana tabacum HOM05D000749 ORTHO05D004893 7.7e-21 104.4 76 71.1
CAN.G792.38 Capsicum annuum HOM05D000749 ORTHO05D004893 2.9e-20 102.4 76 72.4
Oeu054027.1 Olea europaea HOM05D000749 ORTHO05D004893 2.9e-20 102.4 78 66.7
Nitab4.5_0012701g0010 Nicotiana tabacum HOM05D000749 ORTHO05D004893 6.6e-20 101.3 76 68.4
Actinidia22732 Actinidia chinensis HOM05D000749 ORTHO05D004893 1.1e-19 100.5 75 68.0
Rhsim02G0244400 Rhododendron simsii HOM05D000749 ORTHO05D004893 1.1e-19 100.5 90 60.0
Hund14217 Selenicereus undatus HOM05D000749 ORTHO05D004893 1.5e-19 100.1 78 64.1
Migut.A00637 Erythranthe guttata HOM05D000749 ORTHO05D004893 2.5e-19 99.4 76 67.1
Peaxi162Scf00074g00737 Petunia axillaris HOM05D000749 ORTHO05D004893 2.5e-19 99.4 76 67.1
Oeu009964.1 Olea europaea HOM05D000749 ORTHO05D004893 7.2e-19 97.8 76 65.8
Oeu009965.1 Olea europaea HOM05D000749 ORTHO05D004893 7.2e-19 97.8 76 65.8
SEGI_10731 Sequoiadendron giganteum HOM05D000749 ORTHO05D004893 7.2e-19 97.8 79 65.8
SEGI_23492 Sequoiadendron giganteum HOM05D000749 ORTHO05D004893 7.2e-19 97.8 79 65.8
Solyc08g008340.4 Solanum lycopersicum HOM05D000749 ORTHO05D004893 1.2e-18 97.1 76 67.1
Sopen08g004220 Solanum pennellii HOM05D000749 ORTHO05D004893 1.2e-18 97.1 76 67.1
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.6e-18 96.7 75 66.7
CSS0037301 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D004893 1.6e-18 96.7 75 66.7
SalBow8G2356 Salvia bowleyana HOM05D000749 ORTHO05D004893 1.6e-18 96.7 76 67.1
Actinidia22165 Actinidia chinensis HOM05D000749 ORTHO05D004893 2.1e-18 96.3 75 66.7
Hma1.2p1_0359F.1_g135190 Hydrangea macrophylla HOM05D000749 ORTHO05D004893 2.1e-18 96.3 76 63.2
Sc01g0010320 Simmondsia chinensis HOM05D000749 ORTHO05D004893 2.1e-18 96.3 78 62.8
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 3.6e-18 95.5 75 66.7
Dinv37527 Davidia involucrata HOM05D000749 ORTHO05D004893 3.6e-18 95.5 75 65.3
Dinv38827 Davidia involucrata HOM05D000749 ORTHO05D004893 3.6e-18 95.5 74 67.6
HanXRQChr17g0534831 Helianthus annuus HOM05D000749 ORTHO05D004893 4.7e-18 95.1 91 59.3
Cc08_g16130 Coffea canephora HOM05D000749 ORTHO05D004893 6.1e-18 94.7 75 65.3
ECA246G3365 Erigeron canadensis HOM05D000749 ORTHO05D004893 8.0e-18 94.4 75 68.0
THA.LOC104815110 Tarenaya hassleriana HOM05D000749 ORTHO05D004893 8.0e-18 94.4 77 68.8
vmacro13895 Vaccinium macrocarpon HOM05D000749 ORTHO05D004893 1.4e-17 93.6 75 64.0
TWI15G0737 Tripterygium wilfordii HOM05D000749 ORTHO05D004893 1.8e-17 93.2 76 65.8
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 4.0e-17 92.0 75 65.3
PGSC0003DMG400005792 Solanum tuberosum HOM05D000749 ORTHO05D004893 4.0e-17 92.0 76 67.1
vmacro11351 Vaccinium macrocarpon HOM05D000749 ORTHO05D004893 4.0e-17 92.0 93 55.9
Peaxi162Scf00102g01843 Petunia axillaris HOM05D000749 ORTHO05D004893 6.8e-17 91.3 76 67.1
TWI81G1040 Tripterygium wilfordii HOM05D000749 ORTHO05D004893 8.9e-17 90.9 75 65.3
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.2e-16 90.5 120 46.7
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.2e-16 90.5 120 46.7
Manes.02G009500 Manihot esculenta HOM05D000749 ORTHO05D004893 1.2e-16 90.5 76 64.5
Rhsim07G0082100 Rhododendron simsii HOM05D000749 ORTHO05D004893 1.2e-16 90.5 75 62.7
Cpa.g.sc79.30 Carica papaya HOM05D000749 ORTHO05D004893 1.5e-16 90.1 76 63.2
Hma1.2p1_0440F.1_g153320 Hydrangea macrophylla HOM05D000749 ORTHO05D004893 1.5e-16 90.1 76 67.1
Hma1.2p1_0440F.1_g153330 Hydrangea macrophylla HOM05D000749 ORTHO05D004893 1.5e-16 90.1 76 67.1
Hma1.2p1_1461F.1_g285032 Hydrangea macrophylla HOM05D000749 ORTHO05D004893 1.5e-16 90.1 76 67.1
PSO170G3723 Papaver somniferum HOM05D000749 ORTHO05D004893 2.6e-16 89.4 77 64.9
Lj2A167T43 Lonicera japonica HOM05D000749 ORTHO05D004893 3.4e-16 89.0 77 61.0
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 5.7e-16 88.2 78 60.3
Eucgr.E00871 Eucalyptus grandis HOM05D000749 ORTHO05D004893 5.7e-16 88.2 76 63.2
AUR62010846 Chenopodium quinoa HOM05D000749 ORTHO05D004893 7.5e-16 87.8 79 62.0
AUR62019845 Chenopodium quinoa HOM05D000749 ORTHO05D004893 7.5e-16 87.8 79 62.0
MELO3C016297.2 Cucumis melo HOM05D000749 ORTHO05D004893 7.5e-16 87.8 77 64.9
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 7.5e-16 87.8 75 64.0
THA.LOC104806438 Tarenaya hassleriana HOM05D000749 ORTHO05D004893 7.5e-16 87.8 76 64.5
CsaV3_4G006620 Cucumis sativus L. HOM05D000749 ORTHO05D004893 1.3e-15 87.0 77 64.9
Lalb_Chr05g0224151 Lupinus albus HOM05D000749 ORTHO05D004893 2.2e-15 86.3 82 62.2
HanXRQChr03g0083451 Helianthus annuus HOM05D000749 ORTHO05D004893 2.8e-15 85.9 75 64.0
Gohir.A12G236800 Gossypium hirsutum HOM05D000749 ORTHO05D004893 3.7e-15 85.5 76 61.8
Gohir.D12G238000 Gossypium hirsutum HOM05D000749 ORTHO05D004893 3.7e-15 85.5 76 61.8
Gorai.008G254800 Gossypium raimondii HOM05D000749 ORTHO05D004893 3.7e-15 85.5 76 61.8
arahy.Tifrunner.gnm1.ann1.RP1N2X Arachis hypogaea HOM05D000749 ORTHO05D004893 4.9e-15 85.1 75 64.0
Duzib068G0699 Durio zibethinus HOM05D000749 ORTHO05D004893 4.9e-15 85.1 76 63.2
PGR042G0731 Punica granatum HOM05D000749 ORTHO05D004893 4.9e-15 85.1 76 63.2
Lalb_Chr09g0332461 Lupinus albus HOM05D000749 ORTHO05D004893 6.3e-15 84.7 77 59.7
MBI07_g07103_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D004893 6.3e-15 84.7 76 59.2
Nn1g00226 Nelumbo nucifera HOM05D000749 ORTHO05D004893 6.3e-15 84.7 76 63.2
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 8.3e-15 84.3 76 61.8
Haze_09070 Corylus avellana HOM05D000749 ORTHO05D004893 8.3e-15 84.3 76 61.8
PSO063G1647 Papaver somniferum HOM05D000749 ORTHO05D004893 8.3e-15 84.3 68 64.7
unitig_0.g2840 Utricularia gibba HOM05D000749 ORTHO05D004893 8.3e-15 84.3 77 63.6
GSVIVG01019539001 Vitis vinifera HOM05D000749 ORTHO05D004893 8.3e-15 84.3 75 58.7
Carub.0007s1720 Capsella rubella HOM05D000749 ORTHO05D004893 1.1e-14 84.0 76 63.2
ECA240G2456 Erigeron canadensis HOM05D000749 ORTHO05D004893 1.1e-14 84.0 76 63.2
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 1.1e-14 84.0 76 61.8
Potri.001G091001 Populus trichocarpa HOM05D000749 ORTHO05D004893 1.1e-14 84.0 76 59.2
Ciclev10021969m.g Citrus clementina HOM05D000749 ORTHO05D004893 1.4e-14 83.6 76 60.5
TAR629G0702 Trochodendron aralioides HOM05D000749 ORTHO05D004893 1.4e-14 83.6 78 60.3
Atru.chr9.1975 Acer truncatum HOM05D000749 ORTHO05D004893 1.8e-14 83.2 76 59.2
Atru.chr9.1990 Acer truncatum HOM05D000749 ORTHO05D004893 1.8e-14 83.2 76 59.2
CiPaw.12G082300 Carya illinoinensis HOM05D000749 ORTHO05D004893 1.8e-14 83.2 76 61.8
Nitab4.5_0007367g0100 Nicotiana tabacum HOM05D000749 ORTHO05D004893 1.8e-14 83.2 56 69.6
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.4e-14 82.8 76 61.8
AT4G23900 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.4e-14 82.8 76 61.8
ClCG07G011590 Citrullus lanatus HOM05D000749 ORTHO05D004893 2.4e-14 82.8 77 61.0
Manes.01G048900 Manihot esculenta HOM05D000749 ORTHO05D004893 2.4e-14 82.8 75 64.0
Aqoxy5G04234 Aquilegia oxysepala HOM05D000749 ORTHO05D004893 3.1e-14 82.4 76 59.2
Thecc.03G298800 Theobroma cacao HOM05D000749 ORTHO05D004893 3.1e-14 82.4 76 60.5
TPR.G3411 Trifolium pratense HOM05D000749 ORTHO05D004893 3.1e-14 82.4 77 61.0
CANSAT21G0815 Cannabis sativa HOM05D000749 ORTHO05D004893 4.1e-14 82.0 77 58.4
A02p26430 Brassica napus HOM05D000749 ORTHO05D004893 5.4e-14 81.6 75 61.3
BraA02t07646Z Brassica rapa HOM05D000749 ORTHO05D004893 5.4e-14 81.6 75 61.3
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.4e-14 81.6 76 60.5
Sp6g06450 Schrenkiella parvula HOM05D000749 ORTHO05D004893 5.4e-14 81.6 77 61.0
AT4G11010 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 7.0e-14 81.3 77 59.7
Gohir.A09G190400 Gossypium hirsutum HOM05D000749 ORTHO05D004893 7.0e-14 81.3 77 58.4
arahy.Tifrunner.gnm1.ann1.VKZ8SJ Arachis hypogaea HOM05D000749 ORTHO05D004893 9.2e-14 80.9 78 59.0
AL6G45080 Arabidopsis lyrata HOM05D000749 ORTHO05D004893 1.2e-13 80.5 77 59.7
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.2e-13 80.5 77 62.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.2e-13 80.5 77 62.3
BcaC03g16379 Brassica carinata HOM05D000749 ORTHO05D004893 1.6e-13 80.1 75 60.0
C02p42010 Brassica napus HOM05D000749 ORTHO05D004893 1.6e-13 80.1 75 60.0
BolC2t10234H Brassica oleracea HOM05D000749 ORTHO05D004893 1.6e-13 80.1 75 60.0
BraA09t38387Z Brassica rapa HOM05D000749 ORTHO05D004893 1.6e-13 80.1 75 57.3
Carub.0006s2976 Capsella rubella HOM05D000749 ORTHO05D004893 1.6e-13 80.1 77 59.7
Thhalv10028863m.g Eutrema salsugineum HOM05D000749 ORTHO05D004893 1.6e-13 80.1 77 59.7
Gohir.D09G185100 Gossypium hirsutum HOM05D000749 ORTHO05D004893 1.6e-13 80.1 76 57.9
Gorai.006G207600 Gossypium raimondii HOM05D000749 ORTHO05D004893 1.6e-13 80.1 76 57.9
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.6e-13 80.1 76 59.2
Sabra01G0067400 Salix brachista HOM05D000749 ORTHO05D004893 1.6e-13 80.1 87 55.2
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.6e-13 80.1 72 59.7
BcaB05g23872 Brassica carinata HOM05D000749 ORTHO05D004893 2.0e-13 79.7 77 59.7
A01p15210 Brassica napus HOM05D000749 ORTHO05D004893 2.0e-13 79.7 76 60.5
CiPaw.11G120700 Carya illinoinensis HOM05D000749 ORTHO05D004893 2.0e-13 79.7 78 60.3
Lj8A207G53 Lonicera japonica HOM05D000749 ORTHO05D004893 2.0e-13 79.7 71 57.7
Psat7g026120 Pisum sativum HOM05D000749 ORTHO05D004893 2.0e-13 79.7 80 58.8
Potri.003G140600 Populus trichocarpa HOM05D000749 ORTHO05D004893 2.0e-13 79.7 72 61.1
Aa31LG9G11150 Aethionema arabicum HOM05D000749 ORTHO05D004893 2.7e-13 79.3 76 59.2
arahy.Tifrunner.gnm1.ann1.WXZF1C Arachis hypogaea HOM05D000749 ORTHO05D004893 2.7e-13 79.3 78 56.4
MD06G1107800 Malus domestica HOM05D000749 ORTHO05D004893 2.7e-13 79.3 76 57.9
MD14G1129200 Malus domestica HOM05D000749 ORTHO05D004893 2.7e-13 79.3 76 57.9
CARHR231310 Cardamine hirsuta HOM05D000749 ORTHO05D004893 3.5e-13 79.0 76 60.5
Sp7g21870 Schrenkiella parvula HOM05D000749 ORTHO05D004893 3.5e-13 79.0 76 60.5
CARHR255610 Cardamine hirsuta HOM05D000749 ORTHO05D004893 4.5e-13 78.6 77 58.4
Lalb_Chr05g0211551 Lupinus albus HOM05D000749 ORTHO05D004893 4.5e-13 78.6 75 58.7
Medtr8g099450 Medicago truncatula HOM05D000749 ORTHO05D004893 4.5e-13 78.6 77 58.4
Sed0014108 Sechium edule HOM05D000749 ORTHO05D004893 4.5e-13 78.6 78 56.4
VMungo0251G3129 Vigna mungo HOM05D000749 ORTHO05D004893 4.5e-13 78.6 77 61.0
BcaB01g01577 Brassica carinata HOM05D000749 ORTHO05D004893 5.9e-13 78.2 76 60.5
BcaC09g50932 Brassica carinata HOM05D000749 ORTHO05D004893 5.9e-13 78.2 77 58.4
C01p19140 Brassica napus HOM05D000749 ORTHO05D004893 5.9e-13 78.2 77 58.4
BolC1t01840H Brassica oleracea HOM05D000749 ORTHO05D004893 5.9e-13 78.2 77 58.4
Phvul.002G297900 Phaseolus vulgaris HOM05D000749 ORTHO05D004893 1.0e-12 77.4 78 59.0
BcaNung01097 Brassica carinata HOM05D000749 ORTHO05D004893 1.3e-12 77.0 77 57.1
A09p28210 Brassica napus HOM05D000749 ORTHO05D004893 1.3e-12 77.0 75 54.7
BraA01t01459Z Brassica rapa HOM05D000749 ORTHO05D004893 1.3e-12 77.0 76 57.9
LjContig00312_ERROPOS870357g0003779 Lotus japonicus HOM05D000749 ORTHO05D004893 1.7e-12 76.6 78 59.0
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.3e-12 76.3 75 54.7
QL02p030265 Quercus lobata HOM05D000749 ORTHO05D004893 2.3e-12 76.3 77 59.7
FAN18G1347 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.9e-12 75.9 75 54.7
RcHm_v2.0_Chr7g0194711 Rosa chinensis HOM05D000749 ORTHO05D004893 2.9e-12 75.9 75 53.3
DCAR_029900 Daucus carota HOM05D000749 ORTHO05D004893 3.8e-12 75.5 57 63.2
CAN.G1804.11 Capsicum annuum HOM05D000749 ORTHO05D004893 8.6e-12 74.3 44 75.0
FvH4_5g04670 Fragaria vesca HOM05D000749 ORTHO05D004893 8.6e-12 74.3 75 53.3
Sed0008210 Sechium edule HOM05D000749 ORTHO05D004893 1.5e-11 73.6 79 53.2
CDE02G2766 Ceratophyllum demersum HOM05D000749 ORTHO05D004893 1.9e-11 73.2 75 56.0
HPP92_020195 Vanilla planifolia HOM05D000749 ORTHO05D004893 3.3e-11 72.4 76 55.3
Glyma.08G022500 Glycine max HOM05D000749 ORTHO05D004893 9.5e-11 70.9 79 51.9
Glyma.05G216700 Glycine max HOM05D000749 ORTHO05D004893 1.2e-10 70.5 78 52.6
FAN08G0249 Fragaria x ananassa HOM05D000749 ORTHO05D004893 4.7e-10 68.6 81 50.6
Zm00001eb297860 Zea mays HOM05D000749 ORTHO05D004893 1.0e-09 67.4 78 48.7
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.3e-09 66.2 91 45.1
Zm00001eb345550 Zea mays HOM05D000749 ORTHO05D004893 2.3e-09 66.2 77 51.9
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 3.1e-09 65.9 91 45.1
Os05g0595400 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D004893 6.8e-09 64.7 71 53.5
Pp3c27_5820 Physcomitrium patens HOM05D000749 ORTHO05D004893 6.8e-09 64.7 70 48.6
Pp3c16_14020 Physcomitrium patens HOM05D000749 ORTHO05D004893 1.5e-08 63.5 75 46.7
ATR0602G085 Amborella trichopoda HOM05D000749 ORTHO05D004893 5.8e-08 61.6 76 50.0
BcaC04g21094 Brassica carinata HOM05D000749 ORTHO05D032201 2.9e-07 59.3 36 75.0
BolC9t56409H Brassica oleracea HOM05D000749 ORTHO05D032201 2.9e-07 59.3 36 75.0
Duzib084G0871 Durio zibethinus HOM05D000749 ORTHO05D004893 1.4e-06 57.0 63 55.6
AagrBONN_evm.TU.Sc2ySwM_228.341 Anthoceros agrestis HOM05D000749 ORTHO05D004893 2.4e-06 56.2 76 46.1
MELO3C030757.2 Cucumis melo HOM05D019527 ORTHO05D006049 9.2e-06 54.3 36 72.2


User provided reference genes

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