Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 3.6e-132 474.9 244 100.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 8.2e-68 261.2 244 60.2
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 5.0e-65 251.9 271 53.9
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 5.0e-65 251.9 244 58.2
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.6e-63 245.7 271 52.8
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 1.0e-62 244.2 244 57.0
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.6e-61 239.6 244 58.6
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.7e-60 236.9 249 56.6
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 9.4e-56 221.1 246 53.3
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 6.1e-55 218.4 246 54.5
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 8.0e-55 218.0 298 48.3
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.2e-53 214.2 241 53.9
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.6e-53 213.0 263 54.0
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.6e-53 213.0 263 54.0
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 5.7e-53 211.8 250 50.4
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 2.8e-52 209.5 250 50.4
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.4e-51 206.5 244 53.7
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.1e-51 205.7 255 51.4
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.5e-50 202.6 253 50.6
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 4.5e-50 202.2 251 48.2
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 5.9e-50 201.8 251 50.2
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 1.3e-49 200.7 250 48.4
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 2.2e-49 199.9 251 52.6
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.2e-49 199.9 254 50.0
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 3.8e-49 199.1 254 49.2
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.5e-48 196.4 246 52.0
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 3.2e-48 196.1 249 49.4
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.2e-47 194.1 247 49.4
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 2.1e-47 193.4 259 50.2
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 6.8e-46 188.3 246 49.6
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 3.4e-45 186.0 251 48.2
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 9.8e-45 184.5 252 46.8
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 6.3e-44 181.8 250 46.0
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 8.3e-44 181.4 251 48.2
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 8.3e-44 181.4 245 46.9
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 4.1e-43 179.1 247 47.0
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 5.4e-43 178.7 236 49.2
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 4.5e-42 175.6 236 49.6
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.0e-41 174.5 119 74.8
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.3e-41 174.1 119 75.6
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.7e-41 173.7 256 48.0
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.8e-41 172.6 257 43.2
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 3.8e-41 172.6 257 43.2
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 8.6e-41 171.4 119 73.9
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.1e-40 171.0 251 47.0
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.5e-40 170.6 246 48.4
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 3.3e-40 169.5 262 45.8
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 4.2e-40 169.1 244 48.8
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.5e-40 168.7 252 46.0
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 7.2e-40 168.3 119 74.8
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 9.5e-40 167.9 244 43.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 9.5e-40 167.9 246 45.5
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.2e-39 167.5 252 45.6
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.2e-39 167.5 253 45.1
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.1e-39 166.8 119 72.3
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 2.1e-39 166.8 119 72.3
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.1e-39 166.8 234 48.3
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 2.1e-39 166.8 257 42.4
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.8e-39 166.4 251 44.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 3.6e-39 166.0 238 46.6
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.6e-39 166.0 254 42.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.7e-39 165.6 246 47.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.4e-38 164.1 248 46.4
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 1.8e-38 163.7 246 45.1
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.3e-38 163.3 227 47.6
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 3.0e-38 162.9 245 45.7
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 6.8e-38 161.8 248 45.6
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.0e-37 160.2 243 44.0
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.6e-37 159.8 308 38.0
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 5.7e-37 158.7 248 45.2
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 6.3e-36 155.2 252 44.8
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.3e-36 155.2 245 45.7
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 6.3e-36 155.2 251 42.6
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 6.3e-36 155.2 130 63.8
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.1e-35 154.5 233 46.8
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.1e-35 154.5 233 46.8
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.4e-35 154.1 246 43.5
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.4e-35 154.1 254 42.1
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.0e-35 151.8 245 42.4
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 7.0e-35 151.8 245 42.4
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 7.0e-35 151.8 205 48.8
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.2e-34 151.0 294 39.1
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 3.5e-34 149.4 264 42.4
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 5.9e-34 148.7 243 45.3
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 7.8e-34 148.3 121 63.6
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 5.0e-33 145.6 250 42.8
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.3e-32 142.9 248 40.7
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 7.3e-32 141.7 237 43.0
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 2.1e-31 140.2 119 60.5
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.1e-31 140.2 262 41.2
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.7e-31 139.0 242 44.6
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 4.7e-31 139.0 119 60.5
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 6.8e-30 135.2 256 37.5
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 2.6e-29 133.3 246 41.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.6e-29 133.3 259 40.5
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 5.8e-29 132.1 263 38.8
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 5.8e-29 132.1 191 47.1
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.7e-28 130.6 229 41.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 1.9e-27 127.1 254 39.8
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.2e-27 126.3 263 37.3
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 4.1e-27 125.9 240 41.2
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 5.4e-27 125.6 119 55.5
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 7.0e-27 125.2 253 39.5
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 9.2e-27 124.8 252 40.1
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 1.0e-25 121.3 250 39.6
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.9e-25 119.4 266 36.8
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 8.6e-25 118.2 63 95.2
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 4.3e-24 115.9 251 35.9
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 9.5e-24 114.8 232 39.2
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.1e-22 111.3 97 60.8
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.1e-22 109.8 120 53.3
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 5.2e-22 109.0 98 57.1
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 2.6e-21 106.7 111 53.2
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.4e-21 105.9 276 35.9
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.3e-20 104.4 249 37.3
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.9e-19 100.5 198 36.9
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 7.0e-19 98.6 122 52.5
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 3.9e-17 92.8 243 35.0
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.6e-17 92.0 130 43.8
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.6e-17 92.0 130 43.8
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.6e-17 92.0 130 43.8
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 8.6e-17 91.7 241 32.8
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.5e-16 90.1 247 33.6
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 4.3e-16 89.4 264 35.6
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 4.3e-16 89.4 239 34.3
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.3e-16 89.4 121 47.9
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 5.6e-16 89.0 230 38.3
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 9.5e-16 88.2 69 60.9
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.2e-15 87.8 115 47.0
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 1.6e-15 87.4 242 35.1
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 8.1e-15 85.1 248 36.3
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.4e-14 84.3 308 32.8
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.8e-14 84.0 243 30.5
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 1.8e-14 84.0 115 46.1
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 3.1e-14 83.2 263 34.2
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.0e-14 82.8 120 45.8
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 1.2e-13 81.3 125 42.4
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.8e-13 79.0 77 61.0
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.8e-13 79.0 77 61.0
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 5.8e-13 79.0 73 58.9
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 4.9e-12 75.9 61 62.3
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 4.9e-12 75.9 79 53.2
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 3.2e-11 73.2 104 51.0
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 4.1e-11 72.8 57 63.2
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 1.7e-09 67.4 59 66.1
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 3.3e-08 63.2 74 50.0
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.6e-08 62.4 42 69.0
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 3.6e-07 59.7 93 45.2
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 5.2e-06 55.8 74 48.6


User provided reference genes

Program Settings