Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 5782.6 2911 100.0
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3583.5 3072 62.8
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3535.3 3130 60.9
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3511.5 3072 61.4
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3432.1 3059 61.0
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 3415.9 3077 60.4
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3336.6 3133 58.6
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3301.5 3010 59.7
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3280.3 3110 58.1
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3222.6 3065 57.8
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3205.6 3226 55.6
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3163.6 3118 56.2
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3147.1 3130 55.6
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3123.6 3127 55.7
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3110.5 3087 55.8
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3091.2 3106 55.6
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3065.0 3103 55.1
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3033.4 3101 55.7
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3023.8 3107 54.4
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3008.8 3092 54.8
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3003.0 3114 54.2
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3002.2 3109 54.3
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3002.2 3114 54.1
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 2989.9 3121 54.1
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2985.7 3114 54.1
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 2976.8 3140 53.3
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2976.0 3111 54.2
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 2971.4 3105 53.6
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2967.6 3105 53.7
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 2966.4 3157 53.3
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2954.9 3105 53.3
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2953.3 3103 53.3
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2950.6 3106 53.4
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 2942.1 3103 53.5
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 2907.9 3116 52.5
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 2894.8 3090 52.7
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2889.4 3104 52.5
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2889.4 3117 52.6
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2889.4 3095 52.5
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2884.0 3104 52.4
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2883.6 3110 52.7
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2880.5 2483 62.1
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 2874.0 3104 52.5
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 2869.0 3084 52.8
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 2859.3 3023 53.7
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 2849.7 3123 51.7
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2835.1 3140 51.2
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 2834.7 3090 52.1
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 2819.6 3096 51.8
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 2815.0 2945 53.3
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2815.0 3140 51.0
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2813.9 3207 50.7
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 2798.8 3126 50.3
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 2792.7 3119 50.1
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 2787.3 3122 50.1
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 2755.3 3119 50.1
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 2749.9 3104 51.2
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 2746.8 2999 52.7
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2741.1 2745 55.2
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 2740.7 3085 51.2
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 2740.7 3076 51.2
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 2732.2 3078 50.9
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 2729.1 3086 50.6
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 2713.3 3088 50.9
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2710.3 3073 50.7
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2708.7 3075 50.6
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 2706.8 3075 50.7
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 2705.6 3075 50.7
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2683.7 3111 50.2
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 2680.2 3089 50.7
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 2674.0 3148 49.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2663.3 3138 49.6
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2649.8 3092 49.5
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 2621.3 3086 49.7
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2606.2 2286 61.1
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2250.7 3103 44.5
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2244.2 1851 64.9
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2190.6 2403 52.4
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2130.5 3088 42.5
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2010.7 2319 49.2
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1963.3 1868 58.8
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 1888.6 1423 70.8
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1859.0 2471 44.2
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1835.8 2800 41.3
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1815.4 2506 43.2
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1798.1 1818 56.1
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 1760.0 2595 42.1
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 1718.4 1519 61.4
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1679.8 1328 68.0
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1636.7 1230 70.6
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1568.9 2587 39.1
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1526.1 1222 67.5
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1497.6 2604 37.5
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1475.7 1747 48.1
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1435.6 2585 37.6
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1350.5 2210 38.8
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1312.4 1302 54.3
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1171.4 1022 61.7
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1100.9 782 73.7
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 8.9e-302 1042.0 997 57.8
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 5.0e-289 999.6 1574 39.5
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 9.5e-280 968.8 1368 44.8
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 1.2e-277 961.8 816 64.6
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 6.9e-262 909.4 1306 42.9
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 1.2e-261 908.7 917 58.6
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 2.1e-258 897.9 443 97.7
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 1.2e-253 882.1 1501 38.4
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.9e-243 848.2 891 51.4
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 1.6e-242 845.1 1456 37.4
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 3.7e-239 833.9 746 59.2
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.1e-234 818.1 598 71.1
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 1.7e-215 755.4 587 67.8
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.6e-205 721.5 3162 25.9
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.9e-195 688.7 603 60.7
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 9.8e-184 649.8 686 50.4
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 2.1e-154 552.4 459 60.3
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 9.9e-136 490.3 707 42.0
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 2.1e-125 456.1 253 91.3
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 2.5e-123 449.1 411 58.4
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 4.9e-119 434.9 805 35.2
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.8e-116 426.4 896 33.3
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 2.3e-116 426.0 418 54.8
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 4.6e-109 401.7 809 34.1
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-105 390.6 302 65.6
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.4e-105 389.4 928 32.7
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 4.5e-104 385.2 580 43.4
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 8.2e-98 364.4 609 41.7
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 3.6e-93 349.0 783 33.3
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 4.7e-93 348.6 343 57.7
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.1e-86 327.4 192 86.5
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 3.7e-82 312.4 805 30.8
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 8.3e-82 311.2 460 38.9
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 1.2e-80 307.4 353 49.9
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 4.5e-80 305.4 619 34.1
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 5.9e-80 305.1 309 55.0
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 6.5e-79 301.6 247 58.3
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.2e-77 297.4 460 42.4
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 5.9e-72 278.5 327 48.0
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 4.0e-68 265.8 295 51.5
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 1.8e-60 240.4 812 25.7
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 1.3e-58 234.2 156 75.0
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-51 211.1 238 46.2
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 1.7e-47 197.2 118 85.6
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.7e-47 197.2 389 32.9
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 2.9e-42 179.9 192 52.6
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.6e-40 172.6 947 23.2
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 4.3e-38 166.0 530 27.9
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 8.1e-37 161.8 689 25.0
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 4.0e-36 159.5 116 69.8
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.0e-27 130.6 111 57.7
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 3.4e-27 129.8 102 63.7
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.6e-21 109.8 132 47.0
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-20 107.8 109 56.0
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 5.3e-20 105.9 77 70.1
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 8.4e-18 98.6 70 72.9
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.1e-17 98.2 78 66.7
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.2e-16 94.7 143 44.1
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.6e-16 94.4 103 55.3
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 6.7e-15 89.0 50 86.0
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 2.6e-11 77.0 125 39.2
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.1e-08 67.4 144 31.9
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.7e-08 67.0 55 63.6
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 3.5e-08 66.6 45 73.3
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.0e-07 65.1 55 58.2
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 1.8e-07 64.3 60 55.0
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 3.9e-07 63.2 76 47.4
Lsat_1_v5_gn_6_660 Lactuca sativa HOM05D003133 ORTHO05D003642 9.6e-06 58.5 57 54.4


User provided reference genes

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