Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 9.7e-130 466.8 239 100.0
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 3.1e-128 461.8 239 99.2
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 4.0e-91 338.6 229 76.9
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 4.4e-90 335.1 229 74.7
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 4.8e-89 331.6 229 74.7
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 4.8e-89 331.6 226 74.3
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 8.3e-89 330.9 229 74.2
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.1e-88 330.5 226 74.8
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 3.1e-88 328.9 226 74.8
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.2e-87 327.0 226 73.9
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.0e-86 323.9 226 72.6
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 5.0e-86 321.6 221 73.3
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 2.5e-85 319.3 231 69.3
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 4.2e-85 318.5 231 70.6
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.8e-84 315.8 232 71.6
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 3.6e-84 315.5 229 69.0
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 4.7e-84 315.1 226 72.1
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 6.1e-84 314.7 238 67.6
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 8.0e-84 314.3 229 69.0
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.0e-83 313.9 231 68.0
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.0e-83 313.9 229 68.1
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.4e-83 313.5 229 69.0
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.8e-83 313.2 229 68.1
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 3.0e-83 312.4 231 68.8
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 3.0e-83 312.4 225 72.9
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.2e-83 311.6 229 68.1
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 5.2e-83 311.6 232 69.8
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.8e-83 311.2 231 67.5
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 8.9e-83 310.8 212 72.6
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.2e-82 310.5 216 71.8
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.5e-82 310.1 231 68.4
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 2.0e-82 309.7 229 68.6
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.6e-82 309.3 231 68.0
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.6e-82 309.3 231 68.8
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.6e-82 309.3 232 69.4
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 5.7e-82 308.1 226 69.9
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.7e-81 306.6 232 69.0
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.2e-81 306.2 229 66.8
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 2.2e-81 306.2 230 69.6
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.8e-81 305.8 231 68.0
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.8e-81 305.8 232 68.5
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.7e-81 305.4 239 65.3
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 3.7e-81 305.4 229 67.7
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.9e-81 305.1 229 66.4
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 6.3e-81 304.7 229 68.1
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.1e-80 303.9 229 66.4
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.8e-80 303.1 232 68.1
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.4e-80 302.8 231 68.0
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.4e-80 302.8 232 67.2
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.1e-80 302.4 231 64.5
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 4.1e-80 302.0 237 64.6
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 7.0e-80 301.2 229 66.4
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 9.2e-80 300.8 239 64.9
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.2e-79 300.4 231 65.8
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.0e-79 299.7 237 64.6
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.7e-79 299.3 239 64.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 2.7e-79 299.3 231 64.1
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 4.5e-79 298.5 231 66.7
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 7.8e-79 297.7 229 66.8
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 1.0e-78 297.4 229 67.2
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 1.3e-78 297.0 231 62.8
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.3e-78 296.2 234 65.4
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 2.3e-78 296.2 234 65.8
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 2.3e-78 296.2 231 62.3
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 2.3e-78 296.2 231 65.8
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.9e-78 295.8 225 63.6
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 5.0e-78 295.0 231 65.4
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 6.6e-78 294.7 231 64.5
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 6.6e-78 294.7 225 63.1
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 8.6e-78 294.3 231 64.1
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.1e-77 293.9 231 63.2
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.5e-77 293.5 234 63.7
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.5e-77 293.5 230 63.9
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.3e-77 292.4 226 65.0
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 3.3e-77 292.4 231 64.1
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 5.6e-77 291.6 229 64.2
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 7.3e-77 291.2 234 64.1
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 9.5e-77 290.8 226 65.5
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.2e-76 290.4 231 61.9
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.6e-76 290.0 234 62.4
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.6e-76 290.0 234 62.4
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.6e-76 290.0 234 62.4
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 2.1e-76 289.7 226 67.3
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 2.8e-76 289.3 234 64.5
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 2.8e-76 289.3 234 64.5
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.6e-76 288.9 229 64.6
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 3.6e-76 288.9 229 62.4
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 4.7e-76 288.5 234 64.1
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 4.7e-76 288.5 234 64.1
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 4.7e-76 288.5 234 64.1
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.7e-76 288.5 225 64.9
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 6.1e-76 288.1 234 63.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 1.0e-75 287.3 234 61.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.0e-75 287.3 234 62.0
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.0e-75 287.3 229 64.6
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.8e-75 286.6 232 63.8
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.3e-75 286.2 229 62.4
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 3.0e-75 285.8 234 63.2
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.5e-74 283.5 234 62.8
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.0e-74 283.1 231 61.5
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 4.4e-74 282.0 212 65.1
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 4.4e-74 282.0 241 58.5
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 5.8e-74 281.6 219 64.4
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 7.5e-74 281.2 263 57.0
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 9.8e-74 280.8 229 60.3
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.9e-73 278.5 216 65.3
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.8e-72 276.6 226 61.5
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.2e-72 275.8 209 64.1
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.2e-71 273.9 229 60.3
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.3e-70 270.4 234 59.8
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.3e-70 269.6 201 65.2
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.5e-69 266.9 229 60.3
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 2.3e-67 259.6 231 59.7
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 4.0e-67 258.8 236 52.5
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 2.0e-66 256.5 225 59.1
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 7.5e-66 254.6 245 56.7
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.1e-61 240.7 229 56.8
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.5e-61 239.6 229 56.8
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 3.4e-58 229.2 238 47.9
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 4.4e-58 228.8 234 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 2.2e-57 226.5 229 46.7
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.4e-56 223.8 158 71.5
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-54 217.2 197 49.7
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.1e-54 215.3 197 49.7
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.5e-53 213.8 197 48.7
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.3e-53 212.6 197 48.7
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.3e-53 212.2 210 58.1
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 5.2e-51 205.3 231 54.5
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.9e-46 189.1 153 63.4
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.1e-46 188.7 211 52.6
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.6e-44 183.7 224 49.6
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.8e-44 183.0 139 68.3
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.0e-43 177.9 197 43.7
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.2e-39 167.5 171 54.4
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.9e-33 146.4 186 46.8
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-29 134.0 146 46.6
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.3e-29 132.5 108 64.8
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.1e-28 130.2 183 37.2
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.8e-28 129.0 234 38.5
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.1e-27 126.3 119 58.8
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.4e-26 122.9 199 34.2
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.5e-23 112.8 219 40.2
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 6.0e-23 112.1 193 34.7
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 6.0e-23 112.1 83 66.3
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 3.4e-18 96.3 99 53.5
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 3.4e-18 96.3 99 53.5
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 1.7e-17 94.0 76 64.5
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-15 87.8 59 69.5
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.0e-15 85.5 58 67.2
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.8e-14 84.0 57 66.7
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.1e-14 82.4 58 65.5
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.8e-12 76.6 91 40.7
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.3e-12 75.5 64 59.4
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.3e-09 67.8 46 65.2
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 2.9e-09 66.6 61 55.7
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 1.9e-08 63.9 60 56.7
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 1.9e-08 63.9 60 56.7
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 1.2e-07 61.2 46 60.9
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 2.1e-07 60.5 49 57.1
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 1.4e-06 57.8 44 61.4


User provided reference genes

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