Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 2.8e-123 445.7 292 100.0
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.9e-34 150.6 285 59.6
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 9.3e-34 148.3 289 52.6
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.0e-32 144.8 282 52.8
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 9.6e-31 138.3 280 55.0
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.6e-30 137.5 324 43.8
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.1e-29 134.8 308 44.5
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 3.1e-29 133.3 317 44.8
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 9.0e-29 131.7 306 49.0
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.5e-28 131.0 284 47.2
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.5e-28 131.0 270 43.7
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 3.4e-28 129.8 271 43.9
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 9.9e-28 128.3 251 45.0
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 1.3e-27 127.9 241 50.6
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.7e-27 127.5 274 43.4
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 8.4e-27 125.2 273 52.4
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.9e-26 124.0 192 54.7
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.9e-26 124.0 270 52.2
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 2.4e-26 123.6 294 47.3
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 1.2e-25 121.3 113 57.5
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 1.6e-25 120.9 297 44.4
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 3.5e-25 119.8 315 50.2
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 1.0e-24 118.2 267 45.7
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.0e-24 118.2 111 61.3
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.3e-24 117.9 289 39.8
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.3e-24 117.1 111 60.4
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 2.3e-24 117.1 279 46.6
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.0e-24 116.7 322 44.1
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 3.9e-24 116.3 285 37.5
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 3.9e-24 116.3 153 51.0
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 6.7e-24 115.5 280 42.9
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 1.1e-23 114.8 259 39.0
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.9e-23 114.0 161 47.2
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.5e-23 113.6 111 59.5
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 5.6e-23 112.5 110 62.7
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 2.1e-22 110.5 84 64.3
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.1e-22 110.5 276 50.0
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.1e-22 110.5 264 36.4
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 2.8e-22 110.2 276 48.9
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 2.8e-22 110.2 273 43.2
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 4.8e-22 109.4 245 40.0
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.1e-21 108.2 263 39.5
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.1e-21 108.2 156 48.1
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 1.8e-21 107.5 110 57.3
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.4e-21 107.1 281 48.4
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 3.1e-21 106.7 147 63.9
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 6.9e-21 105.5 284 40.8
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 6.9e-21 105.5 268 42.9
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.5e-20 104.4 272 41.5
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 2.6e-20 103.6 294 43.5
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 3.4e-20 103.2 163 44.8
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 4.5e-20 102.8 161 47.2
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 7.6e-20 102.1 263 45.6
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.0e-19 101.7 266 41.0
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 1.0e-19 101.7 157 44.6
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.3e-19 101.3 148 46.6
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.2e-19 100.5 283 47.0
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.2e-19 100.5 67 70.1
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 3.8e-19 99.8 260 41.9
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 3.8e-19 99.8 70 64.3
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 4.9e-19 99.4 110 49.1
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.9e-19 99.4 143 59.4
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.5e-19 99.0 281 44.5
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 8.4e-19 98.6 75 58.7
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 8.4e-19 98.6 75 58.7
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 8.4e-19 98.6 75 58.7
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 8.4e-19 98.6 75 58.7
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 8.4e-19 98.6 274 44.2
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 8.4e-19 98.6 73 60.3
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 1.4e-18 97.8 70 64.3
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.4e-18 97.8 90 54.4
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.4e-18 97.8 266 39.8
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.9e-18 97.4 84 57.1
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 1.9e-18 97.4 73 60.3
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.9e-18 97.4 260 39.6
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.5e-18 97.1 115 54.8
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 2.5e-18 97.1 281 39.1
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.5e-18 97.1 283 51.6
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 3.2e-18 96.7 70 61.4
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 5.5e-18 95.9 74 60.8
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 5.5e-18 95.9 269 53.5
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 5.5e-18 95.9 113 53.1
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 5.5e-18 95.9 270 45.6
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 7.1e-18 95.5 71 59.2
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 7.1e-18 95.5 210 43.8
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 9.3e-18 95.1 115 52.2
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 9.3e-18 95.1 74 59.5
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 1.6e-17 94.4 66 63.6
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 2.1e-17 94.0 71 67.6
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 2.1e-17 94.0 271 43.9
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.7e-17 93.6 290 44.5
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 7.9e-17 92.0 70 61.4
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 7.9e-17 92.0 70 61.4
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 7.9e-17 92.0 253 34.0
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 1.0e-16 91.7 110 44.5
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.8e-16 90.9 67 65.7
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 3.0e-16 90.1 63 73.0
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 3.0e-16 90.1 299 40.8
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 6.7e-16 89.0 64 70.3
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 6.7e-16 89.0 147 44.2
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 6.7e-16 89.0 273 43.2
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.1e-15 88.2 64 65.6
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 3.3e-15 86.7 285 42.5
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 5.7e-15 85.9 102 49.0
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 3.7e-14 83.2 74 48.6
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 4.8e-14 82.8 55 65.5
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 6.3e-14 82.4 117 47.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 6.3e-14 82.4 114 47.4
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.1e-13 81.6 156 41.0
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.4e-13 81.3 294 38.4
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.4e-13 80.5 282 42.9
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 3.1e-13 80.1 155 38.1
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 4.1e-13 79.7 153 45.1
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 9.0e-13 78.6 52 67.3
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.5e-12 77.8 50 72.0
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 2.6e-12 77.0 108 42.6
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 7.6e-12 75.5 281 41.6
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 7.6e-12 75.5 288 40.6
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 1.0e-11 75.1 84 46.4
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 2.2e-11 73.9 290 36.6
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 2.2e-11 73.9 111 38.7
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 8.5e-11 72.0 307 39.4
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 4.2e-10 69.7 58 48.3
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 9.3e-10 68.6 145 36.6
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.6e-09 66.6 120 39.2
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 3.0e-08 63.5 35 80.0
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 8.7e-08 62.0 57 50.9
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 7.4e-07 58.9 70 38.6
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 1.6e-06 57.8 53 47.2


User provided reference genes

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