Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 4.7e-61 237.7 118 100.0
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 2.8e-29 132.1 118 60.2
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 8.9e-28 127.1 116 58.6
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 5.4e-25 117.9 111 58.6
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 1.6e-24 116.3 114 54.4
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 6.0e-24 114.4 114 54.4
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 7.8e-24 114.0 114 50.9
Lsat_1_v5_gn_2_81341 Lactuca sativa HOM05D008294 ORTHO05D010468 7.3e-22 107.5 113 50.4
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 2.1e-21 105.9 113 49.6
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 1.1e-20 103.6 107 53.3
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 1.4e-20 103.2 108 50.0
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 3.1e-20 102.1 122 50.8
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 4.0e-20 101.7 112 50.0
Sopen02g036000 Solanum pennellii HOM05D008294 ORTHO05D010468 6.9e-20 100.9 109 49.5
Solyc02g091380.1 Solanum lycopersicum HOM05D008294 ORTHO05D010468 1.2e-19 100.1 110 50.0
CsaV3_3G021650 Cucumis sativus L. HOM05D008294 ORTHO05D010468 1.5e-19 99.8 121 47.1
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 2.0e-19 99.4 114 47.4
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 2.6e-19 99.0 113 45.1
Nitab4.5_0004399g0030 Nicotiana tabacum HOM05D008294 ORTHO05D010468 4.5e-19 98.2 111 49.5
Nitab4.5_0002248g0070 Nicotiana tabacum HOM05D008294 ORTHO05D010468 5.8e-19 97.8 108 50.0
PGSC0003DMG400030645 Solanum tuberosum HOM05D008294 ORTHO05D010468 5.8e-19 97.8 107 48.6
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 7.6e-19 97.4 112 43.8
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 1.7e-18 96.3 116 44.0
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 1.7e-18 96.3 111 47.7
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 1.7e-18 96.3 106 50.0
Peaxi162Scf00118g00016 Petunia axillaris HOM05D008294 ORTHO05D010468 2.9e-18 95.5 109 46.8
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 4.9e-18 94.7 116 46.6
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 4.9e-18 94.7 119 42.9
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 6.4e-18 94.4 111 43.2
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 6.4e-18 94.4 119 44.5
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 8.4e-18 94.0 107 45.8
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 1.1e-17 93.6 78 62.8
DCAR_025875 Daucus carota HOM05D008294 ORTHO05D010468 3.2e-17 92.0 113 43.4
AUR62023240 Chenopodium quinoa HOM05D008294 ORTHO05D010468 4.2e-17 91.7 125 45.6
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 9.3e-17 90.5 113 41.6
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 3.5e-16 88.6 112 46.4
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 4.6e-16 88.2 114 45.6
EL10Ac2g04485 Beta vulgaris HOM05D008294 ORTHO05D010468 7.9e-16 87.4 128 45.3
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 7.9e-16 87.4 83 56.6
Lj1g0007014 Lotus japonicus HOM05D008294 ORTHO05D010468 2.3e-15 85.9 106 45.3
Prupe.3G159000 Prunus persica HOM05D008294 ORTHO05D010468 2.3e-15 85.9 80 52.5
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 6.7e-15 84.3 110 42.7
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 8.7e-15 84.0 116 40.5
Glyma.02G246900 Glycine max HOM05D008294 ORTHO05D010468 1.1e-14 83.6 105 41.0
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 1.5e-14 83.2 124 37.9
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 4.3e-14 81.6 121 38.8
Glyma.14G069300 Glycine max HOM05D008294 ORTHO05D010468 4.3e-14 81.6 106 40.6
Gohir.D12G055400 Gossypium hirsutum HOM05D008294 ORTHO05D010468 2.1e-13 79.3 97 43.3
Sopen03g007510 Solanum pennellii HOM05D008294 ORTHO05D010468 4.8e-13 78.2 109 40.4
PGSC0003DMG400016702 Solanum tuberosum HOM05D008294 ORTHO05D010468 1.1e-12 77.0 109 38.5
Phvul.008G234000 Phaseolus vulgaris HOM05D008294 ORTHO05D010468 1.4e-12 76.6 107 36.4
Sc10g0000850 Simmondsia chinensis HOM05D008294 ORTHO05D010468 2.4e-12 75.9 112 42.9
VMungo0647G1342 Vigna mungo HOM05D008294 ORTHO05D010468 9.9e-11 70.5 99 42.4
TPR.G3487 Trifolium pratense HOM05D008294 ORTHO05D010468 2.2e-10 69.3 89 39.3
Medtr5g079600 Medicago truncatula HOM05D008294 ORTHO05D010468 2.9e-10 68.9 95 34.7
Zm00001eb334540 Zea mays HOM05D008294 ORTHO05D010468 2.9e-10 68.9 91 40.7
AUR62036944 Chenopodium quinoa HOM05D002803 ORTHO05D003089 8.4e-10 67.4 69 49.3
AUR62032184 Chenopodium quinoa HOM05D002803 ORTHO05D003089 1.1e-09 67.0 69 49.3
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.4e-09 66.6 88 44.3
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.4e-09 66.6 88 44.3
Ah.16g101330 Amaranthus hybridus HOM05D008294 ORTHO05D010468 1.9e-09 66.2 77 42.9
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 3.2e-09 65.5 88 43.2
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 4.2e-09 65.1 116 37.1
Nitab4.5_0003716g0110 Nicotiana tabacum HOM05D002803 ORTHO05D003089 4.2e-09 65.1 80 46.2
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 5.5e-09 64.7 93 39.8
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 5.5e-09 64.7 93 39.8
Cc04_g07570 Coffea canephora HOM05D002803 ORTHO05D003089 1.2e-08 63.5 80 43.8
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 1.2e-08 63.5 70 42.9
Peaxi162Scf00013g00098 Petunia axillaris HOM05D002803 ORTHO05D003089 1.6e-08 63.2 85 38.8
Nitab4.5_0000410g0140 Nicotiana tabacum HOM05D002803 ORTHO05D003089 2.1e-08 62.8 75 46.7
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 2.7e-08 62.4 63 47.6
DCAR_011342 Daucus carota HOM05D002803 ORTHO05D003089 3.5e-08 62.0 93 38.7
Duzib084G1194 Durio zibethinus HOM05D002803 ORTHO05D003089 4.6e-08 61.6 85 41.2
CSS0037901 Camellia sinensis var. sinensis HOM05D002803 ORTHO05D003089 6.0e-08 61.2 100 38.0
Os01g0111700 Oryza sativa ssp. japonica HOM05D008294 ORTHO05D010468 1.0e-07 60.5 76 40.8
SEGI_13625 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.0e-07 60.5 75 42.7
SEGI_32988 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 1.0e-07 60.5 75 42.7
PGSC0003DMG400005702 Solanum tuberosum HOM05D002803 ORTHO05D003089 1.0e-07 60.5 80 43.8
Gorai.008G285200 Gossypium raimondii HOM05D002803 ORTHO05D003089 1.8e-07 59.7 82 41.5
Gohir.A12G265300 Gossypium hirsutum HOM05D002803 ORTHO05D003089 2.3e-07 59.3 82 41.5
Gohir.D12G265500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 2.3e-07 59.3 82 41.5
Lsat_1_v5_gn_5_24961 Lactuca sativa HOM05D002803 ORTHO05D003089 2.3e-07 59.3 87 35.6
SEGI_10730 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 2.3e-07 59.3 74 40.5
Thecc.03G027600 Theobroma cacao HOM05D002803 ORTHO05D003089 2.3e-07 59.3 84 38.1
FvH4_5g12760 Fragaria vesca HOM05D002803 ORTHO05D003089 3.0e-07 58.9 81 39.5
FAN18G3348 Fragaria x ananassa HOM05D002803 ORTHO05D003089 3.0e-07 58.9 81 39.5
FAN18G3648 Fragaria x ananassa HOM05D002803 ORTHO05D003089 3.0e-07 58.9 81 39.5
Peaxi162Scf00015g00069 Petunia axillaris HOM05D002803 ORTHO05D003089 3.0e-07 58.9 96 39.6
SEGI_15898 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 3.0e-07 58.9 74 41.9
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 3.9e-07 58.5 81 42.0
FAN08G1483 Fragaria x ananassa HOM05D002803 ORTHO05D003089 3.9e-07 58.5 81 39.5
MD14G1221200 Malus domestica HOM05D002803 ORTHO05D003089 3.9e-07 58.5 84 40.5
Ciclev10022495m.g Citrus clementina HOM05D002803 ORTHO05D003089 5.1e-07 58.2 83 36.1
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 5.1e-07 58.2 88 37.5
Oeu063395.1 Olea europaea HOM05D002803 ORTHO05D003089 5.1e-07 58.2 87 34.5
Haze_18600 Corylus avellana HOM05D002803 ORTHO05D003089 6.7e-07 57.8 78 41.0
DCAR_023180 Daucus carota HOM05D002803 ORTHO05D003089 6.7e-07 57.8 85 40.0
THA.LOC104801662 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 6.7e-07 57.8 82 41.5
Aqoxy3G03897 Aquilegia oxysepala HOM05D002803 ORTHO05D003089 8.7e-07 57.4 50 52.0
FAN13G3198 Fragaria x ananassa HOM05D002803 ORTHO05D003089 8.7e-07 57.4 81 38.3
Nitab4.5_0001432g0060 Nicotiana tabacum HOM05D002803 ORTHO05D003089 8.7e-07 57.4 51 51.0
Oeu033581.1 Olea europaea HOM05D002803 ORTHO05D003089 8.7e-07 57.4 95 37.9
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 8.7e-07 57.4 81 40.7
Sopen06g026510 Solanum pennellii HOM05D002803 ORTHO05D003089 8.7e-07 57.4 98 35.7
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 8.7e-07 57.4 36 66.7
Cpa.g.sc13.62 Carica papaya HOM05D002803 ORTHO05D003089 1.1e-06 57.0 80 38.8
Duzib205G0759 Durio zibethinus HOM05D002803 ORTHO05D003089 1.1e-06 57.0 85 37.6
QL10p023060 Quercus lobata HOM05D002803 ORTHO05D003089 1.1e-06 57.0 50 52.0
Cfa019832 Carpinus fangiana HOM05D002803 ORTHO05D003089 1.5e-06 56.6 78 41.0
COL.COLO4_22704 Corchorus olitorius HOM05D002803 ORTHO05D003089 1.5e-06 56.6 82 40.2
Prupe.5G216600 Prunus persica HOM05D002803 ORTHO05D003089 1.5e-06 56.6 82 40.2
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 1.5e-06 56.6 83 36.1
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 1.5e-06 56.6 39 56.4
TWI15G0724 Tripterygium wilfordii HOM05D002803 ORTHO05D003089 1.5e-06 56.6 47 55.3
Actinidia39806 Actinidia chinensis HOM05D002803 ORTHO05D003089 1.9e-06 56.2 95 37.9
ATR0053G030 Amborella trichopoda HOM05D002803 ORTHO05D003089 1.9e-06 56.2 43 51.2
Sopen03g038670 Solanum pennellii HOM05D002803 ORTHO05D003089 1.9e-06 56.2 121 34.7
CiPaw.16G083600 Carya illinoinensis HOM05D002803 ORTHO05D003089 2.5e-06 55.8 34 61.8
AUR62032186 Chenopodium quinoa HOM05D002803 ORTHO05D003089 2.5e-06 55.8 69 43.5
Hma1.2p1_0340F.1_g129940 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 2.5e-06 55.8 70 37.1
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 2.5e-06 55.8 80 36.2
Psat2g041240 Pisum sativum HOM05D008294 ORTHO05D010468 2.5e-06 55.8 95 34.7
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 2.5e-06 55.8 107 32.7
PGSC0003DMG400004055 Solanum tuberosum HOM05D002803 ORTHO05D003089 2.5e-06 55.8 106 34.0
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 2.5e-06 55.8 39 53.8
CsaV3_1G006470 Cucumis sativus L. HOM05D002803 ORTHO05D003089 3.3e-06 55.5 61 45.9
Dinv36899 Davidia involucrata HOM05D002803 ORTHO05D003089 3.3e-06 55.5 80 36.2
Hma1.2p1_0595F.1_g186020 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 3.3e-06 55.5 86 39.5
Manes.01G021300 Manihot esculenta HOM05D002803 ORTHO05D003089 3.3e-06 55.5 91 38.5
Medtr1g093840 Medicago truncatula HOM05D002803 ORTHO05D003089 3.3e-06 55.5 39 53.8
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 3.3e-06 55.5 81 39.5
AUR62036946 Chenopodium quinoa HOM05D002803 ORTHO05D003089 4.3e-06 55.1 69 42.0
Pp3c24_20410 Physcomitrium patens HOM05D023866 ORTHO05D026053 4.3e-06 55.1 49 51.0
PGR083G1726 Punica granatum HOM05D002803 ORTHO05D003089 4.3e-06 55.1 85 41.2
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 4.3e-06 55.1 114 33.3
SEGI_25700 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 4.3e-06 55.1 80 37.5
CANSAT80G1035 Cannabis sativa HOM05D002803 ORTHO05D003089 5.6e-06 54.7 54 51.9
Eucgr.K02652 Eucalyptus grandis HOM05D002803 ORTHO05D003089 5.6e-06 54.7 56 50.0
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 5.6e-06 54.7 85 40.0
Solyc06g069250.2 Solanum lycopersicum HOM05D002803 ORTHO05D003089 5.6e-06 54.7 98 34.7
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 5.6e-06 54.7 85 36.5
Cpa.g.sc48.126 Carica papaya HOM05D010455 ORTHO05D010927 7.4e-06 54.3 95 38.9
CiPaw.15G125800 Carya illinoinensis HOM05D002803 ORTHO05D003089 7.4e-06 54.3 81 38.3
ClCG04G011300 Citrullus lanatus HOM05D002803 ORTHO05D003089 7.4e-06 54.3 80 37.5
Dinv38592 Davidia involucrata HOM05D002803 ORTHO05D003089 7.4e-06 54.3 56 48.2
Lalb_Chr02g0151801 Lupinus albus HOM05D002803 ORTHO05D003089 7.4e-06 54.3 39 48.7
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 7.4e-06 54.3 118 33.9
VMungo1309G1453 Vigna mungo HOM05D002803 ORTHO05D003089 7.4e-06 54.3 83 38.6
arahy.Tifrunner.gnm1.ann1.DV8J5Z Arachis hypogaea HOM05D002803 ORTHO05D003089 9.6e-06 53.9 80 40.0
arahy.Tifrunner.gnm1.ann1.WSMZ37 Arachis hypogaea HOM05D002803 ORTHO05D003089 9.6e-06 53.9 80 40.0
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 9.6e-06 53.9 84 35.7
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 9.6e-06 53.9 40 52.5
PGR044G1398 Punica granatum HOM05D002803 ORTHO05D003089 9.6e-06 53.9 84 39.3
TAR622G0697 Trochodendron aralioides HOM05D002803 ORTHO05D003089 9.6e-06 53.9 82 41.5


User provided reference genes

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