Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 0.0e+00 1339.3 670 100.0
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 2.3e-253 879.0 668 69.0
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 2.8e-243 845.5 667 65.4
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 3.7e-243 845.1 672 65.0
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 4.5e-241 838.2 670 64.9
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 5.8e-241 837.8 664 65.1
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 5.7e-236 821.2 707 60.8
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 4.8e-235 818.1 739 59.3
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.1e-234 815.5 668 63.9
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 1.3e-232 810.1 678 63.3
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 3.8e-232 808.5 670 62.2
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 5.0e-232 808.1 665 63.8
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 2.2e-227 792.7 673 61.5
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 2.8e-227 792.3 668 62.4
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 2.6e-225 785.8 666 61.1
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.3e-224 783.5 670 61.9
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 3.6e-222 775.4 666 60.7
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 6.1e-222 774.6 666 61.4
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 1.0e-221 773.9 669 60.4
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 6.9e-218 761.1 666 61.0
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.2e-217 760.4 669 57.8
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.2e-217 760.4 668 59.3
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 1.2e-217 760.4 666 59.9
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 4.5e-217 758.4 665 59.8
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 1.0e-216 757.3 669 59.9
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.3e-216 756.9 666 59.6
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 8.5e-216 754.2 668 59.7
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 8.5e-216 754.2 666 59.6
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 1.1e-215 753.8 667 59.1
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.2e-215 752.3 666 59.3
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.5e-215 751.5 665 59.4
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 2.7e-214 749.2 668 57.5
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 2.7e-214 749.2 666 57.7
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 6.1e-214 748.0 667 58.0
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 3.0e-213 745.7 670 58.5
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 3.0e-213 745.7 667 57.7
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.3e-211 740.3 671 58.6
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.3e-211 740.3 665 57.9
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 2.8e-211 739.2 666 58.1
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 3.7e-211 738.8 666 58.4
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 6.3e-211 738.0 668 58.4
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.4e-210 736.1 666 57.4
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 5.3e-210 734.9 671 57.7
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.2e-209 733.8 671 57.5
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 4.5e-209 731.9 666 58.3
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.0e-208 730.7 665 57.7
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.0e-208 730.7 667 58.5
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 2.9e-208 729.2 666 57.5
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 3.8e-208 728.8 667 56.5
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 4.2e-207 725.3 668 57.3
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 4.2e-207 725.3 665 57.9
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 3.6e-206 722.2 667 57.9
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 6.1e-206 721.5 666 55.9
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.0e-205 720.7 667 57.9
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 5.2e-205 718.4 665 56.1
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 6.7e-205 718.0 666 57.2
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 6.7e-205 718.0 664 56.9
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 1.7e-203 713.4 666 57.2
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 3.7e-203 712.2 665 56.4
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 8.2e-203 711.1 672 57.0
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.2e-201 707.2 665 56.8
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.6e-201 706.8 667 56.7
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.7e-200 703.4 667 55.0
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 6.5e-200 701.4 665 56.4
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 8.5e-200 701.0 685 55.2
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 8.5e-200 701.0 667 54.4
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 1.1e-199 700.7 673 55.0
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.5e-199 700.3 667 55.5
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.9e-199 699.9 667 56.5
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 9.4e-199 697.6 666 55.1
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 3.6e-198 695.7 609 60.4
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 6.1e-198 694.9 686 54.2
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.4e-197 693.7 666 54.5
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 5.2e-197 691.8 667 54.6
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 1.2e-193 680.6 668 53.7
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 5.9e-193 678.3 667 55.6
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.2e-192 676.4 667 54.0
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 5.0e-192 675.2 667 55.6
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 4.2e-191 672.2 649 55.6
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 9.4e-191 671.0 629 56.1
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 8.8e-189 664.5 665 54.3
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 4.9e-187 658.7 666 53.3
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 1.2e-185 654.1 668 53.4
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.0e-185 653.3 628 55.6
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 4.5e-185 652.1 668 52.5
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 5.9e-185 651.7 668 52.4
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.0e-184 648.7 668 52.2
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.0e-184 648.7 668 52.2
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.5e-183 647.1 669 51.6
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 3.3e-183 646.0 670 52.5
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 3.3e-183 646.0 629 55.0
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 7.2e-183 644.8 670 52.7
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 2.1e-182 643.3 670 52.1
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 5.4e-178 628.6 574 57.7
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 1.7e-176 623.6 667 51.0
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 2.5e-175 619.8 668 49.6
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 9.5e-175 617.8 667 51.3
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 1.4e-173 614.0 669 49.9
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 3.4e-172 609.4 677 49.0
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 9.8e-172 607.8 668 49.6
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 3.0e-168 596.3 675 47.6
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.5e-167 594.0 698 48.0
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 9.2e-162 574.7 419 69.9
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 3.6e-158 562.8 663 46.8
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 4.7e-158 562.4 670 45.5
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-157 560.1 594 52.4
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 3.9e-152 542.7 444 61.9
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 2.5e-151 540.0 598 50.3
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 4.7e-150 535.8 598 50.8
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 6.2e-142 508.8 539 52.5
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 3.3e-135 486.5 620 46.6
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 8.4e-123 445.3 678 39.2
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.5e-119 433.7 647 41.4
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.1e-117 428.3 385 56.6
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.9e-114 417.5 679 36.5
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.5e-114 417.2 674 38.9
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 4.2e-114 416.4 279 74.6
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.8e-104 384.4 669 38.0
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 9.7e-103 378.6 250 74.0
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.0e-99 368.6 376 51.6
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 2.1e-97 360.9 294 62.9
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 5.3e-93 346.3 412 50.0
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 1.2e-92 345.1 693 34.5
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.2e-83 314.3 430 46.7
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 2.4e-77 294.3 675 32.0
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 5.9e-76 289.7 250 62.0
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 5.0e-75 286.6 468 40.8
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 3.0e-64 250.8 356 43.0
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 3.0e-59 234.2 286 48.3
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 4.7e-57 226.9 146 70.5
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 9.2e-53 212.6 166 63.9
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 8.9e-48 196.1 159 60.4
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.4e-45 188.7 665 27.2
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 5.4e-45 186.8 359 35.7
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 1.3e-38 165.6 134 61.2
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 9.2e-37 159.5 127 62.2
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 1.1e-32 146.0 409 30.3
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 9.9e-31 139.4 115 60.0
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 9.9e-31 139.4 94 69.1
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 3.8e-30 137.5 901 22.9
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.9e-29 135.2 133 45.9
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 7.3e-26 123.2 215 37.7
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 6.7e-19 100.1 81 61.7
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 1.5e-15 89.0 106 46.2
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 2.9e-14 84.7 55 67.3
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 6.4e-14 83.6 88 45.5
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 9.3e-13 79.7 105 42.9
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 2.7e-12 78.2 42 81.0
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 2.7e-12 78.2 42 81.0
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 3.5e-12 77.8 113 39.8
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 3.5e-12 77.8 113 39.8
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 1.3e-11 75.9 41 80.5
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 2.3e-11 75.1 41 80.5
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 1.9e-10 72.0 57 59.6
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 6.5e-06 57.0 34 76.5


User provided reference genes

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