Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054352.1 Olea europaea HOM05D000009 ORTHO05D005023 8.8e-182 640.2 332 100.0
Dinv23405 Davidia involucrata HOM05D000009 ORTHO05D005023 5.1e-28 129.4 388 32.5
Dinv23403 Davidia involucrata HOM05D000009 ORTHO05D005023 3.3e-27 126.7 389 31.9
Dinv02532 Davidia involucrata HOM05D000009 ORTHO05D005023 1.2e-24 118.2 373 31.6
Dinv23404 Davidia involucrata HOM05D000009 ORTHO05D005023 9.9e-24 115.2 376 30.6
Dinv00089 Davidia involucrata HOM05D000009 ORTHO05D005023 3.8e-23 113.2 396 32.1
Dinv02531 Davidia involucrata HOM05D000009 ORTHO05D005023 5.4e-22 109.4 379 30.1
Dinv02535 Davidia involucrata HOM05D000009 ORTHO05D005023 1.6e-21 107.8 403 30.3
Dinv02536 Davidia involucrata HOM05D000009 ORTHO05D005023 5.6e-19 99.4 371 29.4
CSS0004800 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D005023 1.3e-18 98.2 379 28.8
CSS0041998 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D005023 4.5e-16 89.7 352 29.5
Aqoxy1G02154 Aquilegia oxysepala HOM05D000009 ORTHO05D005023 1.1e-14 85.1 393 29.3
Aqoxy1G04205 Aquilegia oxysepala HOM05D000009 ORTHO05D005023 1.1e-14 85.1 381 28.3
Dinv27947 Davidia involucrata HOM05D000009 ORTHO05D005023 7.1e-14 82.4 315 28.9
GSVIVG01015808001 Vitis vinifera HOM05D000009 ORTHO05D005023 7.9e-13 79.0 365 27.1
CSS0032592 Camellia sinensis var. sinensis HOM05D024187 ORTHO05D005023 3.0e-12 77.0 341 29.3
Dinv09329 Davidia involucrata HOM05D000009 ORTHO05D005023 5.1e-12 76.3 295 29.5
Aqoxy1G04130 Aquilegia oxysepala HOM05D000009 ORTHO05D005023 6.7e-12 75.9 392 27.0
SalBow8G2097 Salvia bowleyana HOM05D000011 ORTHO05D003551 1.1e-11 75.1 246 26.4
SalBow8G4105 Salvia bowleyana HOM05D000011 ORTHO05D003551 1.1e-11 75.1 246 26.4
GSVIVG01015841001 Vitis vinifera HOM05D000009 ORTHO05D005023 2.5e-11 73.9 382 25.1
Cc07_g09980 Coffea canephora HOM05D000011 ORTHO05D005888 2.8e-10 70.5 368 25.0
TAR629G1380 Trochodendron aralioides HOM05D000011 ORTHO05D000018 2.8e-10 70.5 335 25.7
Sc10g0006840 Simmondsia chinensis HOM05D000011 ORTHO05D005888 4.8e-10 69.7 375 25.3
FAN05G2604 Fragaria x ananassa HOM05D001097 ORTHO05D013606 6.2e-10 69.3 427 27.2
FAN26G0664 Fragaria x ananassa HOM05D000011 ORTHO05D005888 1.8e-09 67.8 356 23.3
Ciclev10017794m.g Citrus clementina HOM05D000011 ORTHO05D000018 2.4e-09 67.4 200 28.5
MD02G1141100 Malus domestica HOM05D000011 ORTHO05D005888 4.0e-09 66.6 339 25.1
FvH4_1g12710 Fragaria vesca HOM05D000011 ORTHO05D005888 6.9e-09 65.9 266 25.2
FAN19G2517 Fragaria x ananassa HOM05D000011 ORTHO05D005888 6.9e-09 65.9 356 23.0
RcHm_v2.0_Chr2g0100711 Rosa chinensis HOM05D000011 ORTHO05D005888 6.9e-09 65.9 356 23.9
SalBow8G1192 Salvia bowleyana HOM05D000011 ORTHO05D003551 6.9e-09 65.9 319 23.5
Nn7g37690 Nelumbo nucifera HOM05D000009 ORTHO05D005023 1.2e-08 65.1 394 24.4
arahy.Tifrunner.gnm1.ann1.S50QTL Arachis hypogaea HOM05D000011 ORTHO05D002639 2.0e-08 64.3 297 23.9
SalBow8G4063 Salvia bowleyana HOM05D000011 ORTHO05D003551 2.0e-08 64.3 230 28.3
SalBow8G3875 Salvia bowleyana HOM05D000011 ORTHO05D003551 2.6e-08 63.9 308 25.0
CiPaw.08G139300 Carya illinoinensis HOM05D000011 ORTHO05D005888 3.4e-08 63.5 356 23.6
MBI15_g33662_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 4.5e-08 63.2 255 22.7
Nn1g03847 Nelumbo nucifera HOM05D000009 ORTHO05D005023 4.5e-08 63.2 362 25.4
TAR271G0001 Trochodendron aralioides HOM05D000011 ORTHO05D005888 5.8e-08 62.8 329 23.1
arahy.Tifrunner.gnm1.ann1.5MNM78 Arachis hypogaea HOM05D000011 ORTHO05D010991 9.9e-08 62.0 207 28.5
arahy.Tifrunner.gnm1.ann1.PT8T2W Arachis hypogaea HOM05D000011 ORTHO05D010991 9.9e-08 62.0 207 28.5
arahy.Tifrunner.gnm1.ann1.REWL7K Arachis hypogaea HOM05D000011 ORTHO05D010991 9.9e-08 62.0 207 29.0
arahy.Tifrunner.gnm1.ann1.UZFH7Q Arachis hypogaea HOM05D000011 ORTHO05D010991 9.9e-08 62.0 207 29.0
Cc11_g03990 Coffea canephora HOM05D000011 ORTHO05D000018 9.9e-08 62.0 269 26.8
SalBow6G1007 Salvia bowleyana HOM05D000011 ORTHO05D000018 9.9e-08 62.0 335 24.8
SalBow8G1292 Salvia bowleyana HOM05D000011 ORTHO05D003551 9.9e-08 62.0 239 23.8
Cc01_g07930 Coffea canephora HOM05D000011 ORTHO05D000018 1.3e-07 61.6 198 27.3
Cc04_g13950 Coffea canephora HOM05D000011 ORTHO05D000018 1.3e-07 61.6 275 26.2
Hma1.2p1_1164F.1_g262900 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 1.3e-07 61.6 214 26.6
MBI15_g32190_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.3e-07 61.6 225 26.2
MBI15_g36006_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.3e-07 61.6 273 23.8
CiPaw.14G097200 Carya illinoinensis HOM05D000009 ORTHO05D000008 2.2e-07 60.8 376 23.9
Potri.013G056000 Populus trichocarpa HOM05D000009 ORTHO05D005023 2.2e-07 60.8 301 26.6
SalBow8G0749 Salvia bowleyana HOM05D000011 ORTHO05D003551 2.2e-07 60.8 234 25.6
TAR628G1202 Trochodendron aralioides HOM05D000011 ORTHO05D005888 2.2e-07 60.8 346 23.4
COL.COLO4_37321 Corchorus olitorius HOM05D000011 ORTHO05D000018 2.9e-07 60.5 277 23.8
MBI15_g09163_MAGBIO Magnolia biondii HOM05D000009 ORTHO05D000008 2.9e-07 60.5 267 27.3
RcHm_v2.0_Chr4g0391681 Rosa chinensis HOM05D000011 ORTHO05D005888 2.9e-07 60.5 344 24.4
PGSC0003DMG400021861 Solanum tuberosum HOM05D000011 ORTHO05D000018 2.9e-07 60.5 266 24.4
TAR629G1001 Trochodendron aralioides HOM05D000011 ORTHO05D000018 2.9e-07 60.5 233 26.2
Lj2P690T4 Lonicera japonica HOM05D000011 ORTHO05D000018 3.8e-07 60.1 224 25.4
CANSAT01G1164 Cannabis sativa HOM05D000011 ORTHO05D005888 4.9e-07 59.7 266 26.7
Prupe.7G160100 Prunus persica HOM05D000011 ORTHO05D005888 4.9e-07 59.7 265 23.8
SalBow8G4428 Salvia bowleyana HOM05D000011 ORTHO05D003551 4.9e-07 59.7 324 22.8
Solyc02g084890.3 Solanum lycopersicum HOM05D000011 ORTHO05D005888 4.9e-07 59.7 365 23.3
Aqoxy4G00974 Aquilegia oxysepala HOM05D000009 ORTHO05D005023 6.4e-07 59.3 380 24.7
arahy.Tifrunner.gnm1.ann1.ZGVV39 Arachis hypogaea HOM05D000011 ORTHO05D010991 6.4e-07 59.3 208 26.9
CAN.G358.39 Capsicum annuum HOM05D000011 ORTHO05D005888 6.4e-07 59.3 365 23.8
SalBow1G4529 Salvia bowleyana HOM05D000011 ORTHO05D000018 6.4e-07 59.3 377 22.8
Thecc.03G146900 Theobroma cacao HOM05D000011 ORTHO05D000018 6.4e-07 59.3 344 21.5
Migut.B01263 Erythranthe guttata HOM05D000009 ORTHO05D005023 8.4e-07 58.9 280 25.7
Zm00001eb150770 Zea mays HOM05D000009 ORTHO05D005023 8.4e-07 58.9 264 23.1
Cc04_g12060 Coffea canephora HOM05D000011 ORTHO05D000018 1.1e-06 58.5 276 25.7
MBI15_g27555_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.1e-06 58.5 227 23.3
Nitab4.5_0000723g0210 Nicotiana tabacum HOM05D000011 ORTHO05D005888 1.1e-06 58.5 366 23.5
Os01g0798900 Oryza sativa ssp. japonica HOM05D000009 ORTHO05D005023 1.1e-06 58.5 385 23.1
CAN.G1524.11 Capsicum annuum HOM05D000009 ORTHO05D000008 1.4e-06 58.2 200 27.5
Cfa006904 Carpinus fangiana HOM05D000126 ORTHO05D005888 1.4e-06 58.2 354 23.4
Oeu057199.1 Olea europaea HOM05D000011 ORTHO05D000018 1.4e-06 58.2 206 23.8
Thecc.10G003800 Theobroma cacao HOM05D000009 ORTHO05D000008 1.4e-06 58.2 242 27.3
arahy.Tifrunner.gnm1.ann1.5TMH4E Arachis hypogaea HOM05D000011 ORTHO05D010991 1.9e-06 57.8 233 28.8
arahy.Tifrunner.gnm1.ann1.C6P5C3 Arachis hypogaea HOM05D000011 ORTHO05D010991 1.9e-06 57.8 233 28.8
Cc00_g10780 Coffea canephora HOM05D000011 ORTHO05D000018 1.9e-06 57.8 272 25.4
Dinv05624 Davidia involucrata HOM05D000011 ORTHO05D005888 1.9e-06 57.8 262 25.2
Lj2P692T32 Lonicera japonica HOM05D000011 ORTHO05D000018 1.9e-06 57.8 274 23.7
MD07G1092600 Malus domestica HOM05D000011 ORTHO05D000018 1.9e-06 57.8 289 21.5
QL10p057907 Quercus lobata HOM05D000009 ORTHO05D000008 1.9e-06 57.8 265 25.3
Sopen02g029560 Solanum pennellii HOM05D000011 ORTHO05D005888 1.9e-06 57.8 365 23.6
CAN.G2377.1 Capsicum annuum HOM05D000009 ORTHO05D000008 2.5e-06 57.4 208 26.9
Migut.G00725 Erythranthe guttata HOM05D000011 ORTHO05D000018 2.5e-06 57.4 210 24.3
Nitab4.5_0001542g0150 Nicotiana tabacum HOM05D000011 ORTHO05D000157 2.5e-06 57.4 227 26.0
SalBow8G2176 Salvia bowleyana HOM05D000011 ORTHO05D003551 2.5e-06 57.4 244 23.8
SalBow8G3022 Salvia bowleyana HOM05D000011 ORTHO05D003551 2.5e-06 57.4 252 23.8
SGA_v2.0_scaffold30G12553 Striga asiatica HOM05D000011 ORTHO05D000018 2.5e-06 57.4 215 27.0
TAR376G0168 Trochodendron aralioides HOM05D000011 ORTHO05D005888 2.5e-06 57.4 336 24.4
arahy.Tifrunner.gnm1.ann1.0E6JXZ Arachis hypogaea HOM05D000011 ORTHO05D000018 3.2e-06 57.0 307 21.8
Cfa014107 Carpinus fangiana HOM05D000011 ORTHO05D002639 3.2e-06 57.0 300 23.3
CiPaw.13G156500 Carya illinoinensis HOM05D000009 ORTHO05D000008 3.2e-06 57.0 323 24.1
Eucgr.E03802 Eucalyptus grandis HOM05D000009 ORTHO05D000008 3.2e-06 57.0 325 24.6
FAN23G1440 Fragaria x ananassa HOM05D000011 ORTHO05D005888 3.2e-06 57.0 366 21.3
Gohir.A11G039200 Gossypium hirsutum HOM05D000011 ORTHO05D000018 3.2e-06 57.0 353 21.5
Hma1.2p1_0381F.1_g139960 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 3.2e-06 57.0 346 23.4
Hma1.2p1_1515F.1_g288220 Hydrangea macrophylla HOM05D000009 ORTHO05D005023 3.2e-06 57.0 377 25.7
Medtr3g027420 Medicago truncatula HOM05D000009 ORTHO05D000008 3.2e-06 57.0 224 28.1
QL10p059256 Quercus lobata HOM05D000009 ORTHO05D000008 3.2e-06 57.0 270 24.8
SalBow8G1295 Salvia bowleyana HOM05D000011 ORTHO05D003551 3.2e-06 57.0 184 25.5
PGSC0003DMG400003527 Solanum tuberosum HOM05D000011 ORTHO05D005888 3.2e-06 57.0 364 23.4
PGSC0003DMG401007461 Solanum tuberosum HOM05D000011 ORTHO05D000018 3.2e-06 57.0 208 23.1
TWI09G1527 Tripterygium wilfordii HOM05D000011 ORTHO05D005888 3.2e-06 57.0 271 25.1
Ca_10443_v3 Cicer arietinum L. HOM05D000011 ORTHO05D002639 4.2e-06 56.6 344 25.0
Cc00_g31100 Coffea canephora HOM05D000011 ORTHO05D000018 4.2e-06 56.6 264 25.8
COL.COLO4_37323 Corchorus olitorius HOM05D000011 ORTHO05D000018 4.2e-06 56.6 352 21.9
Nitab4.5_0003313g0020 Nicotiana tabacum HOM05D000011 ORTHO05D005888 4.2e-06 56.6 367 23.4
PSO384G5066 Papaver somniferum HOM05D000011 ORTHO05D005888 4.2e-06 56.6 223 26.0
PGR119G1269 Punica granatum HOM05D000011 ORTHO05D005888 4.2e-06 56.6 205 28.3
EL10Ac9g22899 Beta vulgaris HOM05D000011 ORTHO05D005888 5.5e-06 56.2 362 24.3
CAN.G2022.3 Capsicum annuum HOM05D000011 ORTHO05D000018 5.5e-06 56.2 339 23.3
CAN.G397.42 Capsicum annuum HOM05D000011 ORTHO05D000018 5.5e-06 56.2 339 23.3
CAN.G397.57 Capsicum annuum HOM05D000011 ORTHO05D000018 5.5e-06 56.2 339 23.3
Ciclev10023392m.g Citrus clementina HOM05D000011 ORTHO05D005888 5.5e-06 56.2 361 24.1
Eucgr.E03696 Eucalyptus grandis HOM05D000009 ORTHO05D000008 5.5e-06 56.2 225 28.4
FAN09G2202 Fragaria x ananassa HOM05D000009 ORTHO05D005023 5.5e-06 56.2 199 25.6
Hund08515 Selenicereus undatus HOM05D000011 ORTHO05D005888 5.5e-06 56.2 361 23.3
TWI79G1339 Tripterygium wilfordii HOM05D000011 ORTHO05D000018 5.5e-06 56.2 217 26.7
CAN.G1784.3 Capsicum annuum HOM05D000011 ORTHO05D000018 7.1e-06 55.8 316 22.8
FAN14G0229 Fragaria x ananassa HOM05D000009 ORTHO05D005023 7.1e-06 55.8 199 24.6
MBI14_g01385_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 7.1e-06 55.8 212 27.8
MBI15_g25902_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 7.1e-06 55.8 226 24.8
MBI15_g37120_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 7.1e-06 55.8 366 21.0
Oeu023324.1 Olea europaea HOM05D000011 ORTHO05D005888 7.1e-06 55.8 337 24.3
QL07p043360 Quercus lobata HOM05D000009 ORTHO05D000008 7.1e-06 55.8 264 25.8
SalBow5G4470 Salvia bowleyana HOM05D000011 ORTHO05D000018 7.1e-06 55.8 305 24.3
Cc02_g30020 Coffea canephora HOM05D000009 ORTHO05D000008 9.3e-06 55.5 203 27.1
Cc05_g04510 Coffea canephora HOM05D000011 ORTHO05D000018 9.3e-06 55.5 211 28.9
PGSC0003DMG400026161 Solanum tuberosum HOM05D000011 ORTHO05D005888 9.3e-06 55.5 387 22.5
PGSC0003DMG402007461 Solanum tuberosum HOM05D000011 ORTHO05D000018 9.3e-06 55.5 199 22.6
THA.LOC104819196 Tarenaya hassleriana HOM05D000011 ORTHO05D005888 9.3e-06 55.5 261 26.4
Thecc.10G004000 Theobroma cacao HOM05D000009 ORTHO05D000008 9.3e-06 55.5 242 26.9
GSVIVG01012407001 Vitis vinifera HOM05D000009 ORTHO05D000008 9.3e-06 55.5 210 28.1


User provided reference genes

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