Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 8.8e-140 500.4 268 100.0
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 2.7e-112 409.1 268 79.9
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.9e-110 402.9 272 79.0
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.8e-109 399.1 264 76.5
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.0e-108 395.2 264 75.4
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 6.8e-108 394.4 266 76.3
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.2e-107 393.7 264 76.1
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.2e-107 393.7 264 76.9
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 7.5e-107 391.0 263 76.4
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 2.4e-105 386.0 262 75.6
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 7.1e-105 384.4 267 76.4
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.2e-104 383.6 266 74.8
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 3.0e-103 379.0 285 73.3
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 5.1e-103 378.3 263 72.6
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 6.6e-103 377.9 265 73.6
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 1.9e-102 376.3 260 75.0
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 4.3e-102 375.2 264 73.5
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.6e-101 373.2 261 75.5
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.6e-101 373.2 262 73.3
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 3.1e-100 369.0 263 74.9
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 4.0e-100 368.6 265 71.7
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 6.8e-100 367.9 264 72.3
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.5e-99 366.7 264 75.0
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 2.0e-99 366.3 267 71.9
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 2.0e-99 366.3 262 70.6
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 7.6e-99 364.4 265 71.7
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 9.9e-99 364.0 267 70.8
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 2.2e-98 362.8 269 69.9
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 3.8e-98 362.1 268 69.4
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 8.4e-98 360.9 262 71.0
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 8.4e-98 360.9 269 69.9
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 1.4e-97 360.1 263 70.7
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 1.9e-97 359.8 264 72.3
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.9e-97 359.8 272 73.2
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 2.4e-97 359.4 269 70.3
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 3.2e-97 359.0 272 73.2
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 4.2e-97 358.6 262 71.0
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.2e-97 358.6 272 73.2
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 2.1e-96 356.3 263 71.1
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 2.7e-96 355.9 265 68.7
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 6.0e-96 354.8 265 68.7
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 1.0e-95 354.0 267 70.8
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.0e-95 354.0 262 71.0
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.3e-95 353.6 269 68.4
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 3.9e-95 352.1 264 71.6
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 6.6e-95 351.3 267 68.9
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 8.7e-95 350.9 263 70.0
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.1e-94 350.5 268 68.3
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 5.6e-94 348.2 270 67.4
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 5.6e-94 348.2 264 69.3
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 5.6e-94 348.2 268 67.5
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 5.6e-94 348.2 259 73.0
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 2.1e-93 346.3 265 69.4
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 3.6e-93 345.5 275 66.5
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 8.1e-93 344.4 258 67.1
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 1.1e-92 344.0 261 66.7
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 1.8e-92 343.2 260 66.2
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 3.1e-92 342.4 263 68.4
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 4.0e-92 342.0 267 68.2
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.5e-91 340.1 259 68.3
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.5e-91 340.1 260 66.9
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 2.6e-91 339.3 260 66.2
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 3.4e-91 339.0 258 68.2
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 4.4e-91 338.6 258 68.2
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 4.4e-91 338.6 259 68.3
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 4.4e-91 338.6 258 68.2
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 4.4e-91 338.6 227 77.1
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 4.4e-91 338.6 259 66.4
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 9.9e-91 337.4 263 69.6
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 1.3e-90 337.0 265 66.8
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.2e-90 336.3 223 76.2
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 2.2e-90 336.3 261 68.6
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 8.4e-90 334.3 258 67.4
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.1e-89 334.0 269 66.2
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.1e-89 334.0 271 66.1
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.4e-89 333.6 239 70.7
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.4e-89 333.6 229 74.2
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 4.2e-89 332.0 274 66.1
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 4.2e-89 332.0 268 65.7
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.4e-89 331.6 259 67.6
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 9.3e-89 330.9 259 67.2
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 1.6e-88 330.1 263 68.4
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.3e-87 327.0 233 71.2
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.3e-87 327.0 233 71.2
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.3e-87 327.0 225 74.2
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.7e-87 326.6 233 71.7
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.7e-87 326.6 233 71.7
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 3.0e-87 325.9 221 71.5
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.7e-87 324.3 260 65.8
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.7e-87 324.3 260 65.8
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-86 323.9 258 65.5
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.5e-86 323.6 258 65.5
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.5e-86 323.6 258 65.5
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.9e-86 323.2 260 65.4
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 5.6e-86 321.6 258 65.1
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 2.8e-85 319.3 231 69.3
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.8e-84 316.6 305 57.7
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.9e-82 309.3 259 61.8
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 4.9e-82 308.5 181 82.9
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 9.3e-81 304.3 218 67.0
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.1e-77 293.1 259 62.2
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 2.2e-74 283.1 235 60.9
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 8.4e-74 281.2 267 59.9
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 1.9e-73 280.0 222 62.2
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 8.7e-71 271.2 228 64.5
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 4.0e-68 262.3 195 69.7
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 4.0e-68 262.3 195 69.7
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.0e-66 257.7 194 63.9
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 1.7e-66 256.9 175 78.3
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 2.9e-66 256.1 219 61.2
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.4e-65 253.8 189 67.7
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.1e-64 250.0 238 54.2
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 7.9e-64 248.1 194 59.8
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.9e-63 245.7 200 56.5
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.8e-61 239.6 180 63.3
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.2e-56 224.2 128 89.1
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.4e-52 210.7 141 70.2
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 5.0e-42 175.6 153 51.6
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.5e-41 172.2 160 62.5
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 5.2e-39 165.6 155 48.4
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 9.7e-38 161.4 113 70.8
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 1.2e-35 154.5 265 38.9
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 1.2e-35 154.5 265 38.9
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 2.0e-35 153.7 265 38.9
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.8e-34 149.4 114 62.3
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 2.0e-30 137.1 89 79.8
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 7.0e-28 128.6 76 85.5
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.9e-26 123.2 179 35.2
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.8e-21 105.9 70 70.0
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.2e-19 101.3 70 70.0
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 1.0e-15 88.2 169 30.8
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 8.9e-15 85.1 66 65.2
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 2.6e-14 83.6 60 68.3
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 6.3e-13 79.0 88 59.1
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 5.4e-12 75.9 102 44.1
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 6.6e-10 68.9 38 84.2


User provided reference genes

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