Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 1.2e-95 353.2 182 100.0
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 4.5e-71 271.6 151 90.7
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 5.5e-69 264.6 151 88.1
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 2.1e-68 262.7 151 89.4
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 2.3e-67 259.2 151 86.8
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 4.0e-67 258.5 151 86.8
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 2.6e-66 255.8 151 86.8
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 4.4e-66 255.0 151 86.1
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 4.4e-66 255.0 151 84.1
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 9.8e-66 253.8 151 82.8
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 6.3e-65 251.1 151 84.8
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 3.1e-64 248.8 150 84.0
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 4.1e-64 248.4 151 84.8
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 4.1e-64 248.4 155 82.6
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 1.2e-63 246.9 151 84.1
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 2.0e-63 246.1 152 82.9
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 2.0e-63 246.1 151 84.1
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 2.0e-63 246.1 151 84.1
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 2.0e-63 246.1 151 84.1
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 3.5e-63 245.4 151 82.8
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.5e-63 245.0 152 84.9
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 4.5e-63 245.0 152 84.9
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 4.5e-63 245.0 152 84.9
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 2.3e-62 242.7 151 83.4
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 2.3e-62 242.7 150 82.0
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 3.8e-62 241.9 151 82.1
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 3.8e-62 241.9 155 80.6
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 6.6e-62 241.1 151 82.8
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 2.5e-61 239.2 154 79.9
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 3.3e-61 238.8 151 78.1
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 3.3e-61 238.8 150 79.3
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 4.3e-61 238.4 151 78.8
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 5.6e-61 238.0 151 81.5
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 9.5e-61 237.3 151 78.1
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 1.2e-60 236.9 151 79.5
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 3.6e-60 235.3 151 79.5
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 8.0e-60 234.2 151 79.5
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 4.0e-59 231.9 152 79.6
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 6.8e-59 231.1 151 78.1
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 6.8e-59 231.1 153 77.1
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 8.9e-59 230.7 152 77.6
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 1.2e-58 230.3 151 79.5
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 1.2e-58 230.3 151 79.5
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 1.5e-58 229.9 151 78.1
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 2.0e-58 229.6 151 80.1
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 4.4e-58 228.4 151 77.5
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 4.4e-58 228.4 152 77.6
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 4.4e-58 228.4 155 76.8
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 1.7e-57 226.5 155 78.1
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 2.2e-57 226.1 151 77.5
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 2.2e-57 226.1 150 78.0
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 4.9e-57 224.9 197 64.0
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 6.4e-57 224.6 151 76.8
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 6.4e-57 224.6 167 71.9
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 8.3e-57 224.2 153 77.8
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 8.3e-57 224.2 147 74.1
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 1.1e-56 223.8 151 75.5
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 1.1e-56 223.8 148 79.1
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 2.4e-56 222.6 151 74.2
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 5.4e-56 221.5 149 74.5
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 5.4e-56 221.5 150 77.3
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 2.0e-55 219.5 151 76.2
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 2.0e-55 219.5 152 75.0
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 3.5e-55 218.8 145 76.6
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 4.6e-55 218.4 143 74.8
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 4.6e-55 218.4 153 74.5
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.3e-54 216.9 148 73.0
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 2.3e-54 216.1 149 73.8
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 5.0e-54 214.9 149 74.5
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 5.0e-54 214.9 149 74.5
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 5.0e-54 214.9 149 74.5
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 6.6e-54 214.5 151 72.2
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 1.1e-53 213.8 152 69.7
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 2.5e-53 212.6 149 72.5
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 2.5e-53 212.6 151 71.5
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 7.3e-53 211.1 156 69.9
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 3.6e-52 208.8 150 73.3
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 3.6e-52 208.8 150 73.3
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 3.6e-52 208.8 149 71.1
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 8.0e-52 207.6 159 67.9
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 1.0e-51 207.2 136 77.2
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 1.4e-51 206.8 151 69.5
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 3.1e-51 205.7 149 72.5
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 4.0e-51 205.3 150 70.7
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 5.2e-51 204.9 170 66.5
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 1.2e-50 203.8 159 68.6
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.6e-50 202.6 151 68.2
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 2.6e-50 202.6 162 68.5
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.7e-49 199.9 134 73.1
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.2e-49 199.5 149 69.8
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.9e-49 199.1 149 69.8
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 2.9e-49 199.1 151 70.9
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 2.9e-49 199.1 147 70.1
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 2.9e-49 199.1 150 68.7
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.7e-49 198.7 148 68.9
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 3.7e-49 198.7 141 67.4
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 3.7e-49 198.7 141 67.4
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 6.4e-49 198.0 145 69.7
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 6.4e-49 198.0 145 69.7
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 6.4e-49 198.0 158 67.1
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 1.1e-48 197.2 149 69.1
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 1.9e-48 196.4 151 69.5
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 1.9e-48 196.4 185 60.5
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.9e-48 196.4 151 67.5
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 1.9e-48 196.4 151 67.5
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 2.4e-48 196.1 151 68.2
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 4.1e-48 195.3 140 71.4
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 1.6e-47 193.4 146 69.2
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.6e-47 193.4 146 69.2
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 1.6e-47 193.4 146 69.2
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 1.6e-47 193.4 146 69.2
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 5.6e-45 184.9 148 65.5
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 7.3e-45 184.5 167 61.7
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.8e-43 179.9 119 76.5
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 2.3e-43 179.5 151 61.6
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 8.9e-43 177.6 151 64.9
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 5.8e-42 174.9 109 82.6
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 5.8e-42 174.9 141 63.1
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 2.9e-41 172.6 159 57.2
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 5.4e-40 168.3 150 58.7
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 7.1e-40 167.9 113 74.3
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 9.2e-40 167.5 159 56.6
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.7e-38 163.3 104 78.8
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.3e-38 162.9 151 59.6
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 2.3e-38 162.9 133 66.2
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 5.6e-37 158.3 104 79.8
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 1.8e-35 153.3 132 57.6
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 2.0e-34 149.8 160 54.4
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 2.6e-34 149.4 145 52.4
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 4.4e-34 148.7 159 54.1
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 3.5e-31 139.0 151 53.6
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 3.5e-31 139.0 159 46.5
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 8.6e-30 134.4 150 47.3
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 6.2e-28 128.3 70 90.0
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 1.2e-26 124.0 91 65.9
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 9.9e-26 120.9 126 50.0
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 4.2e-24 115.5 145 42.8
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 1.5e-21 107.1 82 69.5
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 1.8e-14 83.6 127 36.2
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 2.3e-14 83.2 89 58.4
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 5.1e-14 82.0 124 34.7
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 1.6e-07 60.5 33 84.8
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 4.6e-07 58.9 79 36.7
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 3.0e-06 56.2 45 66.7
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 3.9e-06 55.8 143 25.9
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 6.7e-06 55.1 85 35.3


User provided reference genes

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