Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 5.4e-46 187.2 87 100.0
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.5e-19 98.6 68 70.6
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 4.3e-19 97.8 68 70.6
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 7.3e-19 97.1 68 67.6
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 7.3e-19 97.1 68 67.6
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 1.2e-18 96.3 68 66.2
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 1.2e-18 96.3 68 67.6
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 1.6e-18 95.9 68 66.2
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.6e-18 95.9 68 66.2
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 2.1e-18 95.5 68 67.6
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 2.1e-18 95.5 68 66.2
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 2.8e-18 95.1 68 66.2
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 2.8e-18 95.1 68 66.2
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 2.8e-18 95.1 68 66.2
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.8e-18 95.1 68 64.7
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 2.8e-18 95.1 68 63.2
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.6e-18 94.7 68 66.2
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 3.6e-18 94.7 68 66.2
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 3.6e-18 94.7 68 64.7
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 4.7e-18 94.4 68 64.7
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.7e-18 94.4 68 64.7
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.7e-18 94.4 68 64.7
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 4.7e-18 94.4 68 64.7
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.2e-18 94.0 68 63.2
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 6.2e-18 94.0 68 66.2
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 8.1e-18 93.6 68 64.7
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 8.1e-18 93.6 68 64.7
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 8.1e-18 93.6 68 64.7
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 8.1e-18 93.6 68 64.7
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 8.1e-18 93.6 68 64.7
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 1.1e-17 93.2 68 63.2
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 1.1e-17 93.2 68 61.8
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.1e-17 93.2 68 61.8
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 1.1e-17 93.2 68 64.7
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 1.4e-17 92.8 68 61.8
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 1.4e-17 92.8 68 66.2
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 1.4e-17 92.8 68 61.8
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 1.8e-17 92.4 68 63.2
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 2.4e-17 92.0 68 63.2
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 2.4e-17 92.0 68 61.8
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 2.4e-17 92.0 68 63.2
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 2.4e-17 92.0 68 63.2
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 2.4e-17 92.0 68 61.8
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 2.4e-17 92.0 68 61.8
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 2.4e-17 92.0 68 63.2
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 2.4e-17 92.0 68 61.8
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 3.1e-17 91.7 68 63.2
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 3.1e-17 91.7 68 64.7
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 3.1e-17 91.7 68 61.8
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 4.0e-17 91.3 68 60.3
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.0e-17 91.3 68 63.2
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 4.0e-17 91.3 68 60.3
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 5.2e-17 90.9 68 61.8
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 5.2e-17 90.9 68 61.8
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 5.2e-17 90.9 68 61.8
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 6.8e-17 90.5 68 61.8
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 6.8e-17 90.5 68 60.3
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 6.8e-17 90.5 68 60.3
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 6.8e-17 90.5 68 60.3
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 8.9e-17 90.1 68 60.3
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.2e-16 89.7 68 63.2
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 1.2e-16 89.7 68 58.8
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 1.2e-16 89.7 68 61.8
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 1.5e-16 89.4 68 61.8
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 1.5e-16 89.4 68 58.8
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.5e-16 89.4 68 61.8
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 2.0e-16 89.0 68 58.8
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 2.0e-16 89.0 68 61.8
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 2.6e-16 88.6 68 61.8
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 4.4e-16 87.8 68 58.8
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 4.4e-16 87.8 68 57.4
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 5.8e-16 87.4 68 55.9
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 5.8e-16 87.4 68 58.8
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 5.8e-16 87.4 68 58.8
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 7.6e-16 87.0 68 55.9
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 9.9e-16 86.7 67 58.2
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 1.7e-15 85.9 68 58.8
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 2.2e-15 85.5 68 55.9
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 2.2e-15 85.5 68 55.9
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 2.2e-15 85.5 68 57.4
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.2e-15 85.5 68 58.8
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 2.9e-15 85.1 68 54.4
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 2.9e-15 85.1 68 55.9
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 2.9e-15 85.1 68 57.4
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 3.8e-15 84.7 68 55.9
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 3.8e-15 84.7 68 55.9
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 3.8e-15 84.7 68 58.8
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 3.8e-15 84.7 68 60.3
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 3.8e-15 84.7 68 58.8
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 3.8e-15 84.7 68 60.3
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 3.8e-15 84.7 68 60.3
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 3.8e-15 84.7 68 57.4
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 3.8e-15 84.7 68 55.9
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 4.9e-15 84.3 68 58.8
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 4.9e-15 84.3 68 58.8
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 4.9e-15 84.3 71 59.2
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 4.9e-15 84.3 68 58.8
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 6.4e-15 84.0 68 52.9
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 6.4e-15 84.0 68 54.4
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 8.4e-15 83.6 68 55.9
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 8.4e-15 83.6 68 58.8
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 8.4e-15 83.6 68 54.4
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.1e-14 83.2 66 63.6
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 1.1e-14 83.2 68 58.8
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 1.1e-14 83.2 68 54.4
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 1.1e-14 83.2 68 54.4
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 1.1e-14 83.2 68 55.9
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 1.1e-14 83.2 68 52.9
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.9e-14 82.4 68 54.4
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 1.9e-14 82.4 68 52.9
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 2.4e-14 82.0 68 58.8
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.4e-14 82.0 68 58.8
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 2.4e-14 82.0 68 52.9
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 3.2e-14 81.6 68 55.9
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 4.2e-14 81.3 68 52.9
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 4.2e-14 81.3 68 54.4
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 5.4e-14 80.9 68 51.5
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 5.4e-14 80.9 68 52.9
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 5.4e-14 80.9 68 54.4
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 7.1e-14 80.5 68 52.9
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.2e-13 79.7 68 50.0
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 1.2e-13 79.7 68 54.4
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 2.1e-13 79.0 68 51.5
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 2.7e-13 78.6 68 51.5
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 2.7e-13 78.6 68 52.9
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 2.7e-13 78.6 68 52.9
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 2.7e-13 78.6 68 52.9
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 6.0e-13 77.4 58 60.3
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 6.0e-13 77.4 68 51.5
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.0e-12 76.6 63 57.1
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 1.1e-11 73.2 68 47.1
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 1.5e-11 72.8 68 48.5
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 1.5e-11 72.8 115 36.5
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 1.5e-11 72.8 55 63.6
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 7.3e-11 70.5 68 50.0
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 8.1e-10 67.0 68 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 2.0e-08 62.4 68 39.7


User provided reference genes

Program Settings