Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 1.5e-189 666.0 338 100.0
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.7e-42 177.6 167 58.1
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.7e-42 177.6 167 58.1
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.7e-42 177.6 167 58.1
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.4e-41 174.5 183 55.2
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.2e-40 171.4 183 56.3
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 1.1e-38 164.9 168 53.6
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 9.4e-38 161.8 171 57.3
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.4e-36 157.9 169 56.2
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.4e-36 157.9 182 50.5
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 5.2e-36 156.0 168 56.5
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 8.8e-36 155.2 167 55.1
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 3.3e-35 153.3 167 56.9
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 9.7e-35 151.8 167 52.7
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 9.7e-35 151.8 184 48.4
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.4e-33 147.9 169 55.6
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 7.0e-33 145.6 170 51.8
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 5.9e-32 142.5 169 52.1
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 2.2e-31 140.6 182 46.2
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 6.5e-31 139.0 169 47.3
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.1e-30 138.3 169 50.9
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.5e-30 137.9 169 49.1
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 3.2e-30 136.7 168 50.6
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 3.2e-30 136.7 186 48.4
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 1.2e-29 134.8 170 50.6
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 1.0e-28 131.7 195 46.2
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.4e-28 131.3 185 47.0
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.8e-28 131.0 184 47.3
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 1.8e-28 131.0 184 47.3
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 4.0e-28 129.8 169 50.9
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 5.2e-28 129.4 166 48.8
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 5.2e-28 129.4 186 47.3
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 8.8e-28 128.6 165 47.3
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 2.0e-27 127.5 170 50.6
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 3.3e-27 126.7 165 46.7
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 5.7e-27 125.9 174 46.6
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 1.7e-26 124.4 168 46.4
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.7e-26 124.4 196 46.4
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 2.8e-26 123.6 171 45.6
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 3.7e-26 123.2 185 44.9
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 4.8e-26 122.9 177 44.1
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.8e-26 122.9 163 49.1
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.8e-26 122.9 174 47.1
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 8.2e-26 122.1 166 47.0
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.1e-25 121.7 176 45.5
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.1e-25 121.7 171 48.5
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.8e-25 120.9 168 47.0
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 2.4e-25 120.6 166 47.6
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 9.1e-25 118.6 164 50.0
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 9.1e-25 118.6 170 46.5
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 2.0e-24 117.5 165 46.7
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 2.7e-24 117.1 162 46.9
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 4.5e-24 116.3 169 45.0
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 5.9e-24 115.9 169 46.2
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.0e-23 115.2 166 45.2
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 1.3e-23 114.8 168 44.6
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 1.3e-23 114.8 173 43.9
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.2e-23 114.0 172 44.2
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 1.1e-22 111.7 185 43.2
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.1e-22 111.7 175 41.1
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 1.1e-22 111.7 214 36.9
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 1.5e-22 111.3 171 48.0
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 1.5e-22 111.3 178 40.4
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.9e-22 110.9 162 44.4
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 2.5e-22 110.5 166 46.4
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 9.4e-22 108.6 177 44.1
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.2e-21 108.2 182 44.5
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.7e-21 107.1 162 43.8
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 4.7e-21 106.3 178 43.3
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.7e-21 106.3 179 41.9
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.0e-20 105.1 169 46.7
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.0e-20 105.1 174 39.1
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.4e-20 104.8 170 43.5
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.8e-20 104.4 159 42.8
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.3e-20 104.0 181 43.1
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.0e-20 103.6 169 46.2
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 4.0e-20 103.2 184 40.8
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 5.2e-20 102.8 189 41.3
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 1.2e-19 101.7 184 40.2
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.0e-19 100.9 160 44.4
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 2.6e-19 100.5 169 40.2
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.6e-19 100.5 174 46.0
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 3.4e-19 100.1 176 39.2
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 4.4e-19 99.8 184 39.7
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 7.5e-19 99.0 181 43.1
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 7.5e-19 99.0 137 46.7
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 9.8e-19 98.6 189 40.7
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 2.8e-18 97.1 184 42.4
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 8.3e-18 95.5 188 39.9
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.4e-17 94.7 154 42.2
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 1.8e-17 94.4 184 40.2
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.8e-17 94.4 154 44.2
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 4.1e-17 93.2 168 42.3
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.2e-16 91.7 164 36.6
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 1.2e-16 91.7 120 50.8
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 3.5e-16 90.1 154 40.9
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.5e-16 89.7 185 38.9
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 5.9e-16 89.4 185 40.0
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 7.7e-16 89.0 166 38.6
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 1.5e-14 84.7 188 37.2
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 5.5e-14 82.8 187 38.0
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 5.5e-14 82.8 173 38.2
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 7.2e-14 82.4 184 37.0
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 7.2e-14 82.4 182 38.5
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 7.2e-14 82.4 182 38.5
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 7.2e-14 82.4 182 38.5
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 9.5e-14 82.0 183 38.8
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.2e-13 81.6 186 39.8
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.2e-13 81.6 193 35.2
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 4.7e-13 79.7 177 39.5
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 4.7e-13 79.7 182 37.4
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 8.0e-13 79.0 77 53.2
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.3e-12 77.4 170 38.8
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 1.2e-11 75.1 169 36.1
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 5.7e-11 72.8 127 38.6
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 9.8e-11 72.0 138 36.2
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 3.7e-10 70.1 146 35.6
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 6.3e-10 69.3 52 71.2
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.8e-09 67.8 182 33.5
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 1.8e-09 67.8 142 35.9
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.8e-09 67.8 231 30.7
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 3.1e-09 67.0 63 61.9
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 7.0e-09 65.9 133 37.6
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 7.0e-09 65.9 182 32.4
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 1.0e-07 62.0 57 57.9
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.6e-07 59.3 155 33.5
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 8.6e-07 58.9 75 46.7
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.5e-06 58.2 155 32.9
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 1.5e-06 58.2 78 38.5
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 4.3e-06 56.6 151 35.8


User provided reference genes

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