Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 2468.3 1261 100.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1655.2 1261 69.2
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1619.8 1252 67.7
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1616.7 1262 67.1
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1616.3 1260 66.6
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1594.7 1259 66.7
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1588.5 1259 65.4
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1588.2 1263 66.0
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1584.7 1260 66.3
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1584.3 1254 66.0
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1582.8 1261 65.7
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1575.1 1260 66.1
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1574.3 1264 65.5
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1573.5 1257 65.6
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1572.0 1262 65.5
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1570.8 1266 64.8
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1564.3 1252 65.9
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1563.5 1262 65.5
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1563.5 1254 65.6
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1562.4 1262 64.7
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1555.4 1257 64.9
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1553.1 1262 65.5
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1552.3 1261 64.2
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1547.7 1262 63.8
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1546.2 1256 64.4
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1545.8 1236 66.2
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1545.8 1261 64.7
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1543.9 1257 65.3
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1543.1 1254 64.4
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1540.0 1262 64.0
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1540.0 1262 64.9
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1539.6 1261 63.8
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1538.1 1261 64.6
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1535.8 1257 64.2
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1533.1 1262 63.9
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1514.2 1263 63.3
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1504.2 1263 63.3
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1500.3 1262 62.9
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1497.3 1246 63.5
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1497.3 1254 63.1
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1495.7 1260 61.7
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1494.9 1235 63.7
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1494.2 1254 63.0
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1493.0 1259 61.3
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1491.1 1254 62.8
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1488.4 1254 62.7
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1487.6 1254 62.7
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1483.8 1260 62.0
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1482.6 1254 62.4
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1478.0 1260 61.7
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1474.5 1264 62.0
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1474.5 1261 62.0
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1471.8 1256 61.5
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1471.4 1259 61.1
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1457.6 1262 61.7
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1456.0 1261 60.3
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1447.2 1254 61.8
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1446.0 1223 62.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1441.0 1258 59.9
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1430.2 1265 59.4
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1430.2 1260 59.4
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1426.0 1260 59.1
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1421.0 1257 60.1
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1418.3 1262 59.0
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1410.2 1257 59.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1409.8 1256 59.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1409.0 1263 59.5
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1405.6 1259 58.9
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1404.8 1269 59.3
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1403.7 1256 59.1
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1402.9 1256 58.3
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1401.7 1262 58.1
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1399.4 1262 58.0
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1397.1 1263 58.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1397.1 1256 58.5
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1395.9 1258 58.8
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1394.8 1263 58.1
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1388.2 1261 57.6
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1388.2 1257 58.9
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1385.2 1264 59.2
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1380.9 1246 58.0
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1374.0 1073 67.6
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1372.5 1169 61.8
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1369.8 1237 58.3
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1364.7 1261 57.0
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1362.8 1262 59.4
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1356.3 1236 58.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1351.7 1246 57.4
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1345.9 1382 55.1
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1342.8 1246 56.9
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1342.4 1255 57.6
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1332.4 1226 58.0
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1303.9 1261 56.0
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1285.0 1256 56.1
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1267.7 1229 55.2
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1255.4 1275 54.3
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1236.9 1074 60.8
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1229.9 1259 52.9
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1226.5 1263 51.9
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1223.4 1271 53.9
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1117.4 1135 54.6
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 7.0e-304 1047.7 874 63.6
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 5.4e-296 1021.5 875 62.6
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 7.2e-293 1011.1 944 56.7
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 7.5e-290 1001.1 1015 55.5
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 2.0e-274 949.9 1240 46.9
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 9.0e-243 844.7 1294 38.8
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.0e-242 843.6 1293 39.1
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 2.4e-240 836.6 1312 39.6
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.9e-237 827.0 737 60.7
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.0e-222 778.1 1238 39.8
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.0e-217 761.5 1266 36.9
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 2.2e-217 760.4 1223 39.5
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 4.2e-216 756.1 1239 39.0
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 4.8e-212 742.7 1239 38.6
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.0e-197 694.1 856 48.1
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.4e-195 687.2 1069 40.6
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.4e-190 671.4 612 60.0
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 9.1e-187 658.7 1280 33.8
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.3e-182 644.0 571 59.4
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.8e-173 612.1 543 58.9
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.3e-172 609.0 661 50.1
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 3.1e-158 563.9 472 65.0
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.5e-152 545.0 416 68.0
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.8e-135 487.6 545 49.5
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.2e-117 429.1 321 68.2
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 7.9e-106 389.8 296 67.9
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.9e-75 288.9 1418 24.0
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 4.7e-74 284.3 209 67.9
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.3e-71 273.9 262 52.7
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.2e-68 265.4 210 63.3
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.5e-67 261.9 187 73.8
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 1.2e-50 206.5 238 50.4
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.1e-50 205.7 437 33.0
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 2.1e-42 179.1 109 78.0
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 8.1e-42 177.2 472 29.0
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 5.6e-27 127.9 1318 20.3
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 2.2e-23 115.9 96 64.6
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 5.4e-14 84.7 343 25.4
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.1e-11 77.0 79 55.7
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 4.3e-11 75.1 91 48.4
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 6.2e-10 71.2 80 52.5
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.8e-09 69.7 63 61.9
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.5e-08 66.6 72 51.4
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 3.4e-08 65.5 100 39.0
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 9.9e-08 63.9 51 68.6
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 9.9e-08 63.9 51 68.6
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 3.8e-07 62.0 63 60.3
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 6.4e-07 61.2 38 71.1
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 1.9e-06 59.7 36 77.8
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 4.2e-06 58.5 115 29.6
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 5.5e-06 58.2 62 51.6
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 7.1e-06 57.8 64 53.1


User provided reference genes

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