Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 2.0e-203 712.2 357 100.0
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 2.3e-167 592.4 357 84.3
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 6.5e-106 388.3 364 59.3
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 8.8e-103 377.9 359 59.3
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.9e-97 360.1 374 55.6
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.5e-94 350.5 374 53.7
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.6e-94 349.7 376 54.5
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 3.4e-94 349.4 374 53.5
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.7e-93 347.1 364 53.8
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 4.5e-91 339.0 373 51.5
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 2.9e-90 336.3 373 51.2
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 8.5e-90 334.7 372 52.4
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.6e-88 330.5 371 52.8
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 9.8e-86 321.2 359 51.0
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 2.8e-85 319.7 362 50.6
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 8.3e-85 318.2 377 49.9
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.6e-83 313.9 382 50.3
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 5.0e-82 308.9 384 50.3
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 6.6e-82 308.5 367 48.5
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 8.0e-80 301.6 371 48.0
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.3e-79 300.1 377 49.9
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.3e-79 300.1 377 49.9
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 3.4e-78 296.2 368 49.7
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 5.7e-78 295.4 364 49.2
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 9.8e-78 294.7 371 49.3
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 4.9e-77 292.4 379 48.8
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.1e-76 291.2 354 48.6
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.4e-76 290.0 364 49.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 5.4e-76 288.9 358 49.4
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 7.0e-76 288.5 366 49.2
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 9.2e-76 288.1 361 48.2
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.0e-75 287.0 362 48.1
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.7e-75 286.6 377 47.7
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 2.7e-75 286.6 362 46.4
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 5.9e-75 285.4 389 46.0
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 3.9e-74 282.7 333 52.3
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 8.6e-74 281.6 389 45.0
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 7.3e-73 278.5 384 44.5
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 9.5e-73 278.1 378 47.1
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.6e-72 277.3 349 49.3
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.1e-72 276.9 375 46.7
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.7e-72 275.8 385 44.9
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.7e-72 275.8 384 44.5
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 8.0e-72 275.0 377 46.2
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.4e-71 274.2 386 44.8
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.4e-71 274.2 364 47.3
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.8e-71 273.9 365 47.9
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 2.3e-71 273.5 349 47.0
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 3.1e-71 273.1 381 45.4
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.0e-70 270.4 379 44.6
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 3.4e-70 269.6 380 45.0
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 4.4e-70 269.2 368 45.9
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 7.0e-68 261.9 379 44.1
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.6e-67 260.8 386 40.2
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 1.6e-67 260.8 398 43.2
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 6.0e-67 258.8 383 44.4
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 6.0e-67 258.8 357 43.7
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 7.8e-67 258.5 441 40.8
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 5.2e-63 245.7 361 45.2
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 2.6e-62 243.4 384 40.1
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 3.4e-62 243.0 389 42.9
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 4.4e-62 242.7 351 41.9
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 7.5e-62 241.9 363 42.4
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 2.2e-61 240.4 349 41.8
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 3.7e-61 239.6 358 44.4
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 6.4e-61 238.8 353 42.5
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 8.3e-61 238.4 350 41.4
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 8.3e-61 238.4 367 40.9
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.4e-60 237.7 368 43.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.4e-60 236.9 363 41.6
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 5.4e-60 235.7 368 40.2
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 5.4e-60 235.7 366 41.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 9.2e-60 235.0 362 41.2
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.2e-59 234.6 332 45.5
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 2.7e-59 233.4 362 41.2
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 7.8e-59 231.9 369 40.1
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.3e-58 231.1 357 43.7
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 3.9e-58 229.6 358 42.2
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 5.1e-58 229.2 363 43.3
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 8.6e-58 228.4 396 42.2
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 1.9e-57 227.3 360 43.1
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.9e-57 227.3 371 41.5
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 8.1e-56 221.9 389 39.3
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.8e-55 220.7 361 40.2
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.8e-55 218.8 352 42.0
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 1.2e-54 218.0 434 37.3
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.2e-54 218.0 378 38.1
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 2.0e-54 217.2 364 36.5
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 5.8e-54 215.7 383 38.9
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 7.6e-54 215.3 374 40.9
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 3.8e-53 213.0 330 40.6
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 4.9e-53 212.6 337 42.4
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 8.4e-53 211.8 356 40.7
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.1e-52 211.5 354 39.0
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 7.1e-52 208.8 351 43.3
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 7.1e-52 208.8 383 37.9
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 2.7e-51 206.8 385 37.7
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 7.8e-51 205.3 368 40.5
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 6.6e-50 202.2 422 37.2
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 9.0e-47 191.8 362 38.7
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 2.0e-46 190.7 361 38.2
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 7.6e-46 188.7 367 36.8
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 1.3e-45 188.0 214 50.9
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 3.2e-44 183.3 264 44.3
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.1e-41 174.9 202 50.0
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.5e-41 173.7 349 38.4
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 5.6e-41 172.6 365 35.9
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 2.1e-40 170.6 360 36.7
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 3.6e-40 169.9 191 48.7
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 4.8e-40 169.5 360 36.4
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 3.1e-39 166.8 288 38.2
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 4.0e-39 166.4 203 48.3
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.2e-38 164.9 203 48.3
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 5.8e-38 162.5 352 34.9
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 2.9e-37 160.2 377 32.6
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.8e-37 159.8 198 47.0
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.1e-36 158.3 168 51.2
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.1e-36 158.3 275 42.9
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 2.4e-36 157.1 354 35.9
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 3.9e-34 149.8 194 42.8
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 6.7e-34 149.1 121 54.5
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.9e-33 147.5 136 61.0
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.3e-32 144.8 184 48.4
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 8.1e-32 142.1 366 30.3
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 2.9e-29 133.7 186 40.9
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 3.4e-22 110.2 114 55.3
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-20 105.1 226 34.5
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.4e-20 104.8 168 37.5
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 9.3e-20 102.1 168 37.5
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 6.0e-19 99.4 112 52.7
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 9.0e-15 85.5 169 31.4
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.2e-14 85.1 352 29.0
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 5.0e-13 79.7 158 31.6
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.5e-13 79.0 164 31.7
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 1.4e-12 78.2 347 25.1
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.6e-11 73.2 162 33.3
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.3e-10 71.6 172 29.7
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 1.9e-09 67.8 86 40.7
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 6.9e-07 59.3 174 26.4
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 6.9e-07 59.3 174 26.4
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 6.9e-07 59.3 174 26.4
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 6.9e-07 59.3 174 26.4
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 6.9e-07 59.3 174 26.4
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-06 58.2 174 25.3
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 2.0e-06 57.8 71 46.5
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 7.7e-06 55.8 365 23.6


User provided reference genes

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