Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 8.4e-236 820.1 446 100.0
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.8e-169 599.7 399 88.7
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 6.4e-111 405.2 406 60.6
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 6.4e-103 378.6 415 58.8
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 5.5e-102 375.6 422 58.1
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 9.3e-102 374.8 422 57.3
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.1e-101 373.6 421 58.2
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 1.1e-99 367.9 397 59.2
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 7.4e-99 365.2 396 57.6
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.1e-98 363.6 419 57.0
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-92 344.7 345 62.9
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 5.1e-92 342.4 414 55.1
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 5.1e-92 342.4 359 60.2
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.8e-90 335.9 419 55.6
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.1e-89 334.7 368 60.9
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 2.4e-89 333.6 366 60.1
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 5.9e-88 328.9 353 58.9
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.7e-87 327.4 356 60.1
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 5.0e-87 325.9 414 53.4
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.9e-86 323.9 419 53.7
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 7.2e-86 322.0 422 58.3
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 2.7e-85 320.1 424 52.4
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 7.4e-83 312.0 412 53.2
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.4e-81 307.8 443 49.2
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.8e-81 307.4 426 51.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 3.1e-81 306.6 413 52.3
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 5.3e-81 305.8 412 51.7
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.2e-80 304.7 288 63.9
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 2.0e-80 303.9 410 51.7
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.0e-80 303.9 413 51.3
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.0e-79 301.6 414 52.9
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.3e-79 301.2 412 50.7
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.7e-79 300.8 341 56.9
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.7e-79 300.8 428 50.7
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.0e-79 299.3 345 57.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 5.0e-79 299.3 436 49.3
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 5.0e-79 299.3 361 57.9
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 2.5e-78 297.0 363 55.6
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 4.2e-78 296.2 352 55.4
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 5.5e-78 295.8 422 49.3
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.1e-77 293.9 402 51.2
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.9e-76 289.7 357 56.6
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 2.6e-75 287.0 412 51.2
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.4e-75 285.4 356 56.5
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 7.4e-75 285.4 415 48.4
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 7.4e-75 285.4 358 52.5
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 8.2e-74 282.0 353 53.5
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.1e-73 281.6 415 48.0
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.4e-73 281.2 358 52.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 3.1e-73 280.0 331 56.5
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 5.3e-73 279.3 408 50.0
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.2e-72 278.1 340 55.0
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.0e-71 275.0 407 48.4
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.2e-71 273.9 370 51.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 5.0e-71 272.7 366 54.9
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 8.5e-71 271.9 360 51.9
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 8.5e-71 271.9 358 50.3
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.5e-70 270.4 351 53.3
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 2.5e-70 270.4 370 51.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 7.2e-70 268.9 423 46.1
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 7.2e-70 268.9 405 48.1
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.1e-69 267.3 417 48.2
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.6e-69 266.5 322 53.4
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.0e-69 265.4 358 49.7
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 8.0e-69 265.4 410 49.3
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.0e-68 265.0 292 57.9
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 1.4e-68 264.6 356 51.7
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.0e-67 260.8 406 49.8
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.7e-67 259.2 285 57.5
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 9.7e-67 258.5 294 55.8
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.3e-66 258.1 337 52.8
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.7e-66 257.7 418 45.5
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.2e-66 257.3 285 57.2
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.1e-65 255.0 353 50.4
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.8e-65 254.2 418 45.2
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 7.0e-65 252.3 370 48.6
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 9.1e-65 251.9 410 48.3
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.0e-64 250.8 349 51.6
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 7.7e-64 248.8 357 49.6
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.2e-63 247.3 327 54.4
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.9e-62 244.2 357 48.7
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.2e-62 243.0 261 59.8
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 7.2e-62 242.3 351 49.9
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.2e-61 241.5 430 47.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.7e-61 240.4 283 53.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 3.6e-61 240.0 361 47.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 8.0e-61 238.8 356 50.0
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.0e-60 238.4 357 48.2
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.0e-60 236.9 359 47.6
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.7e-58 231.1 415 44.1
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.8e-58 230.3 412 44.2
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.8e-57 227.6 309 50.2
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.3e-55 221.5 359 45.7
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 3.6e-53 213.4 413 42.9
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 8.0e-53 212.2 337 46.6
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 8.0e-53 212.2 347 43.5
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.0e-52 211.8 190 66.3
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 2.3e-52 210.7 415 44.1
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.0e-51 207.6 344 43.3
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 2.6e-51 207.2 410 41.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 5.7e-51 206.1 408 42.6
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.3e-50 204.9 244 54.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 8.3e-50 202.2 339 43.7
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.4e-49 201.4 340 45.0
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.4e-49 200.7 339 43.1
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 3.1e-49 200.3 339 43.1
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 3.1e-49 200.3 218 61.5
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 7.0e-49 199.1 395 41.0
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 9.1e-49 198.7 356 43.0
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.6e-48 198.0 382 41.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 2.0e-48 197.6 341 43.7
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 7.7e-48 195.7 357 42.3
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 7.7e-48 195.7 247 53.4
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.0e-47 195.3 391 41.4
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.0e-47 195.3 391 41.4
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.0e-47 195.3 380 41.6
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.9e-46 191.0 407 39.6
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 3.3e-46 190.3 396 41.7
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 2.1e-45 187.6 238 52.9
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.7e-42 177.9 210 57.6
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.7e-42 177.9 210 57.6
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 5.4e-41 172.9 294 42.2
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 7.0e-41 172.6 315 42.2
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 7.8e-40 169.1 186 57.5
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 8.6e-39 165.6 356 42.7
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 2.6e-35 154.1 118 73.7
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 3.4e-35 153.7 312 38.1
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 3.2e-33 147.1 311 37.6
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 2.0e-32 144.4 108 72.2
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-30 138.7 128 64.8
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 5.2e-28 129.8 177 52.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 3.4e-27 127.1 240 42.1
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 6.0e-24 116.3 323 37.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 4.0e-20 103.6 219 40.2
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-20 103.2 119 57.1
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-20 103.2 119 57.1
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-18 98.2 137 49.6
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-17 95.1 198 38.9
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.9e-14 84.7 150 40.7
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.1e-09 68.9 84 51.2
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 1.4e-09 68.6 181 32.0
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 7.1e-09 66.2 172 36.6
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.3e-09 65.9 133 39.1
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.3e-09 65.9 133 39.1
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.3e-09 65.9 133 39.1
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-08 65.5 135 38.5
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-08 63.9 133 38.3
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-08 63.9 133 38.3
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 2.3e-07 61.2 86 47.7
unitig_37.g12182 Utricularia gibba HOM05D004683 ORTHO05D005388 1.1e-06 58.9 116 35.3


User provided reference genes

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