Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.3e-95 353.2 202 100.0
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 2.8e-37 159.5 120 79.2
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.1e-33 147.5 120 75.8
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.9e-33 146.7 119 82.4
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 3.2e-33 146.0 116 80.2
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.2e-32 144.1 121 75.2
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 2.1e-32 143.3 113 73.5
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.1e-32 143.3 114 72.8
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.7e-32 142.9 121 70.2
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 2.7e-32 142.9 118 73.7
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 3.5e-32 142.5 120 75.8
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 4.6e-32 142.1 118 66.1
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 4.6e-32 142.1 118 72.0
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 7.8e-32 141.4 120 69.2
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.0e-31 141.0 120 72.5
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.0e-31 141.0 111 77.5
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.0e-31 141.0 116 75.9
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.3e-31 140.6 116 77.6
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 2.3e-31 139.8 119 73.9
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 2.3e-31 139.8 119 73.9
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.3e-31 139.8 114 71.9
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.0e-31 139.4 120 71.7
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 3.0e-31 139.4 115 72.2
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.0e-31 139.4 116 78.4
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 5.1e-31 138.7 120 66.7
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 5.1e-31 138.7 114 77.2
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 6.6e-31 138.3 118 72.9
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 8.7e-31 137.9 119 70.6
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 8.7e-31 137.9 119 73.9
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 8.7e-31 137.9 118 73.7
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.1e-30 137.5 120 78.3
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.1e-30 137.5 115 74.8
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.5e-30 137.1 107 77.6
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.9e-30 136.7 117 80.3
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.9e-30 136.7 123 74.8
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 2.5e-30 136.3 120 69.2
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.5e-30 136.3 118 73.7
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.3e-30 136.0 115 80.9
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 4.3e-30 135.6 120 72.5
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 5.6e-30 135.2 118 75.4
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 7.3e-30 134.8 119 73.9
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 9.6e-30 134.4 119 73.1
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 9.6e-30 134.4 114 75.4
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.3e-29 134.0 114 76.3
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.6e-29 133.7 120 69.2
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.1e-29 133.3 113 77.0
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.1e-29 133.3 113 77.0
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 6.2e-29 131.7 121 74.4
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 6.2e-29 131.7 119 64.7
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 8.1e-29 131.3 124 66.9
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.4e-28 130.6 114 72.8
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.4e-28 130.6 114 72.8
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.4e-28 130.6 124 64.5
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.4e-28 130.6 120 64.2
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.4e-28 130.6 117 80.3
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.8e-28 130.2 120 63.3
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.4e-28 129.8 115 75.7
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.1e-28 129.4 117 58.1
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 4.0e-28 129.0 121 71.1
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 4.0e-28 129.0 102 76.5
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 4.0e-28 129.0 105 74.3
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 5.3e-28 128.6 120 67.5
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 5.3e-28 128.6 120 67.5
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 5.3e-28 128.6 120 67.5
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 5.3e-28 128.6 120 66.7
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 5.3e-28 128.6 120 67.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 5.3e-28 128.6 117 78.6
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.9e-28 128.3 117 78.6
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 6.9e-28 128.3 113 76.1
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 6.9e-28 128.3 120 69.2
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 6.9e-28 128.3 116 66.4
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 6.9e-28 128.3 108 76.9
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 6.9e-28 128.3 108 76.9
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 9.0e-28 127.9 103 72.8
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 9.0e-28 127.9 113 69.0
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 9.0e-28 127.9 108 76.9
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-27 127.5 120 69.2
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-27 127.5 120 67.5
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.2e-27 127.5 120 67.5
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.2e-27 127.5 120 67.5
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 1.2e-27 127.5 121 67.8
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.5e-27 127.1 115 66.1
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.0e-27 126.7 118 76.3
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.0e-27 126.7 118 72.9
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.0e-27 126.7 124 64.5
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.4e-27 125.9 107 72.9
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 4.5e-27 125.6 114 72.8
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.3e-26 124.0 115 70.4
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.7e-26 123.6 115 72.2
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.7e-26 123.6 110 74.5
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.2e-26 123.2 115 72.2
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.2e-26 123.2 109 73.4
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 2.9e-26 122.9 103 75.7
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.1e-25 120.9 107 75.7
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.1e-25 120.9 140 63.6
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.9e-25 120.2 115 72.2
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 9.3e-25 117.9 120 60.8
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 9.3e-25 117.9 113 72.6
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 9.3e-25 117.9 74 74.3
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 9.3e-25 117.9 106 70.8
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.2e-24 117.5 76 71.1
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.1e-24 116.7 103 62.1
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.7e-24 116.3 74 73.0
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 4.6e-24 115.5 102 72.5
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.0e-24 115.2 74 73.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 6.0e-24 115.2 106 69.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 7.9e-24 114.8 102 78.4
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.9e-24 114.8 110 62.7
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.3e-23 114.0 105 73.3
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.3e-23 114.0 61 85.2
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.3e-23 113.2 104 77.9
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.3e-23 113.2 104 77.9
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 3.9e-23 112.5 103 75.7
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 6.7e-23 111.7 110 66.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 8.7e-23 111.3 116 67.2
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.5e-22 109.8 115 68.7
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 7.4e-22 108.2 104 68.3
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 9.6e-22 107.8 151 48.3
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 2.8e-21 106.3 104 71.2
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 4.8e-21 105.5 131 58.0
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 4.8e-21 105.5 60 80.0
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 6.2e-21 105.1 66 69.7
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.1e-21 104.8 57 84.2
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 1.4e-20 104.0 58 82.8
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.0e-19 100.1 116 58.6
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 5.8e-19 98.6 63 76.2
Oeu013824.1 Olea europaea HOM05D011671 ORTHO05D013298 8.4e-18 94.7 57 87.7
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.1e-17 91.7 138 50.0
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.6e-16 90.5 55 72.7
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.0e-15 87.8 202 44.6
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.3e-15 87.4 105 46.7
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.9e-15 85.9 196 44.4
Oeu020497.1 Olea europaea HOM05D011671 ORTHO05D013298 2.1e-13 80.1 49 81.6
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.3e-12 75.5 82 65.9
Oeu062235.1 Olea europaea HOM05D011671 ORTHO05D013298 1.4e-09 67.4 43 67.4
Oeu012351.1 Olea europaea HOM05D011671 ORTHO05D013298 5.5e-09 65.5 43 65.1
Oeu031460.1 Olea europaea HOM05D011671 ORTHO05D013298 1.2e-08 64.3 90 46.7
Oeu018301.1 Olea europaea HOM05D011671 ORTHO05D013298 2.1e-08 63.5 90 46.7
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.3e-07 60.8 66 62.1
Oeu047440.1 Olea europaea HOM05D011671 ORTHO05D000646 3.9e-07 59.3 36 69.4
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.5e-06 57.4 37 67.6
Oeu054760.3 Olea europaea HOM05D011671 ORTHO05D013298 2.5e-06 56.6 69 47.8
Oeu032657.1 Olea europaea HOM05D060385 ORTHO05D013298 3.3e-06 56.2 63 47.6


User provided reference genes

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