Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 5.9e-258 893.6 443 100.0
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 2.0e-221 772.3 443 86.2
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.1e-194 682.6 445 74.4
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 8.4e-188 660.6 444 72.5
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.4e-188 660.6 440 71.8
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.1e-187 660.2 438 72.6
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.5e-186 655.2 441 72.3
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 3.0e-185 652.1 445 71.5
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.9e-185 651.7 440 71.8
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 3.3e-184 648.7 438 71.7
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 7.4e-184 647.5 441 71.9
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 3.7e-183 645.2 441 71.0
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 4.8e-183 644.8 440 72.0
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 4.1e-182 641.7 442 72.2
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.2e-181 640.2 446 70.6
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.2e-181 640.2 441 70.5
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.5e-181 639.8 438 70.1
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 3.8e-180 635.2 449 69.9
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 4.2e-179 631.7 445 70.3
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 7.2e-179 630.9 439 68.8
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 6.1e-178 627.9 442 68.3
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.4e-177 626.7 446 68.4
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 2.5e-176 622.5 442 68.1
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.3e-175 620.2 443 66.6
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.7e-175 619.8 445 69.0
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.8e-175 619.0 442 67.4
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.8e-175 618.2 445 67.6
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 8.2e-175 617.5 444 67.1
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.4e-174 616.7 440 69.1
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 1.4e-174 616.7 436 69.0
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.8e-174 616.3 445 67.9
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.2e-173 613.6 445 67.6
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 2.6e-173 612.5 443 66.8
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 3.4e-173 612.1 446 68.2
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 3.4e-173 612.1 445 67.0
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 4.5e-173 611.7 450 66.4
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 5.0e-172 608.2 446 66.6
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 8.5e-172 607.4 439 67.4
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 3.2e-171 605.5 446 65.9
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.1e-168 597.0 444 64.4
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.3e-167 593.6 425 67.5
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.3e-167 593.6 451 65.2
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 2.8e-167 592.4 438 67.6
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 1.4e-166 590.1 436 66.5
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 1.4e-166 590.1 446 65.2
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.8e-166 589.7 446 65.5
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 7.0e-166 587.8 423 66.9
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.2e-165 587.0 442 64.0
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 1.2e-165 587.0 429 64.3
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 1.5e-165 586.6 434 65.9
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 5.9e-165 584.7 434 65.9
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.0e-164 583.9 442 65.2
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.9e-164 582.4 442 65.2
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 8.5e-164 580.9 442 63.1
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.9e-163 579.7 445 62.7
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.9e-163 579.7 436 66.3
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.5e-163 579.3 449 63.7
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 5.5e-163 578.2 378 73.8
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 7.2e-163 577.8 427 64.6
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 9.4e-163 577.4 432 65.5
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.7e-162 575.1 442 64.0
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.4e-161 573.5 449 63.0
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.3e-161 572.8 430 65.1
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 3.9e-161 572.0 431 63.8
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.0e-160 569.7 438 63.9
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 4.4e-160 568.5 411 66.2
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 5.7e-160 568.2 427 63.7
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 9.7e-160 567.4 430 62.8
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 4.8e-159 565.1 442 63.6
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 4.8e-159 565.1 442 63.6
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 4.8e-159 565.1 445 61.6
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 6.3e-159 564.7 426 64.1
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 3.5e-157 558.9 457 62.1
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.3e-156 557.0 442 65.4
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 2.2e-156 556.2 408 64.7
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 3.8e-156 555.4 445 61.8
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 6.5e-156 554.7 440 65.2
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 8.5e-156 554.3 421 62.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 8.5e-156 554.3 400 69.0
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 8.5e-156 554.3 452 63.5
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 2.5e-155 552.7 435 65.5
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 2.7e-154 549.3 436 63.8
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 8.0e-154 547.7 377 70.0
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.0e-153 547.4 430 61.9
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.4e-153 547.0 455 61.5
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.8e-153 546.6 433 62.6
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 3.0e-153 545.8 414 63.8
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 8.8e-153 544.3 341 74.5
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.5e-152 543.5 340 75.3
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 4.4e-152 542.0 442 64.5
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 7.5e-152 541.2 444 63.3
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 7.5e-152 541.2 376 67.6
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 2.8e-151 539.3 433 60.0
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.7e-151 538.9 430 63.7
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.7e-151 538.9 430 63.7
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 6.3e-151 538.1 441 63.7
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.1e-150 537.3 439 64.0
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 3.1e-150 535.8 436 62.6
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 4.1e-150 535.4 439 62.6
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 4.1e-150 535.4 439 64.2
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 4.5e-149 531.9 436 62.8
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 5.9e-149 531.6 443 63.0
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.3e-148 530.4 436 64.2
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 3.8e-148 528.9 429 60.4
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 1.9e-147 526.6 443 63.2
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 1.2e-146 523.9 445 62.0
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 3.6e-146 522.3 421 62.0
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 6.1e-146 521.5 442 62.2
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 4.0e-145 518.8 443 62.8
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 4.0e-145 518.8 443 62.8
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.5e-144 516.9 436 63.1
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 7.5e-144 514.6 443 58.7
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 3.7e-143 512.3 439 58.5
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.8e-142 510.0 446 58.5
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 2.4e-142 509.6 438 57.5
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 7.7e-141 504.6 439 58.1
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-140 503.8 446 57.8
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 2.9e-140 502.7 361 70.1
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 6.1e-138 495.0 414 58.2
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.1e-138 495.0 349 66.8
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 6.1e-138 495.0 349 67.9
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.9e-135 485.3 439 60.1
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.4e-134 483.8 407 57.7
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 4.3e-131 472.2 350 65.7
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.7e-124 450.3 318 66.4
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 9.8e-120 434.5 327 63.0
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.4e-118 430.6 359 63.2
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.4e-110 404.1 378 56.6
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 3.0e-108 396.4 317 62.5
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 3.0e-108 396.4 317 62.5
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.4e-97 360.9 381 49.9
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.4e-96 356.3 431 46.6
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 4.6e-77 292.7 239 59.0
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 7.9e-69 265.4 185 68.6
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 4.3e-67 259.6 372 43.3
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.4e-65 254.6 164 73.2
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 5.9e-64 249.2 243 53.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 5.9e-64 249.2 172 67.4
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 7.7e-56 222.2 257 49.4
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.4e-43 179.9 108 75.0
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 8.0e-37 159.1 146 54.8
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.1e-33 148.7 138 58.7
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 9.4e-30 135.6 109 66.1
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.0e-28 132.1 110 63.6
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 2.8e-26 124.0 99 56.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 3.4e-11 73.9 51 54.9
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 2.7e-08 64.3 54 53.7


User provided reference genes

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