Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 5.4e-77 290.8 136 100.0
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 6.9e-40 167.5 105 76.2
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 3.3e-26 122.1 109 56.9
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 5.3e-24 114.8 112 55.4
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 5.9e-23 111.3 109 52.3
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.2e-20 103.6 108 54.6
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.7e-20 102.4 97 57.7
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 3.6e-20 102.1 111 53.2
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 4.6e-20 101.7 109 51.4
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 6.1e-20 101.3 100 53.0
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.3e-19 99.4 113 51.3
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 2.3e-19 99.4 56 75.0
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 3.0e-19 99.0 108 51.9
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 3.0e-19 99.0 112 50.0
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 3.9e-19 98.6 83 60.2
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.9e-19 98.6 112 50.0
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 5.1e-19 98.2 83 60.2
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 8.8e-19 97.4 63 73.0
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.5e-18 95.9 69 65.2
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 2.5e-18 95.9 83 61.4
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.3e-18 95.5 87 57.5
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 4.3e-18 95.1 92 54.3
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 4.3e-18 95.1 112 49.1
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 5.7e-18 94.7 63 73.0
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 5.7e-18 94.7 98 53.1
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 7.4e-18 94.4 83 60.2
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 9.7e-18 94.0 113 51.3
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.7e-17 93.2 50 80.0
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.7e-17 93.2 83 60.2
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.2e-17 92.8 76 59.2
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.2e-17 92.8 58 74.1
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 2.2e-17 92.8 110 49.1
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 2.2e-17 92.8 117 45.3
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 2.2e-17 92.8 112 49.1
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.8e-17 92.4 89 52.8
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 3.7e-17 92.0 64 68.8
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 3.7e-17 92.0 83 60.2
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 3.7e-17 92.0 83 57.8
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 6.3e-17 91.3 64 68.8
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 6.3e-17 91.3 69 63.8
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 8.2e-17 90.9 122 48.4
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.1e-16 90.5 104 51.9
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.1e-16 90.5 61 68.9
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.1e-16 90.5 65 64.6
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.1e-16 90.5 60 71.7
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.8e-16 89.7 70 64.3
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.4e-16 89.4 53 71.7
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 3.1e-16 89.0 51 80.4
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 3.1e-16 89.0 120 49.2
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.1e-16 88.6 53 75.5
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.1e-16 88.6 53 75.5
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.1e-16 88.6 53 75.5
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 4.1e-16 88.6 47 83.0
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 5.3e-16 88.2 49 75.5
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 6.9e-16 87.8 53 75.5
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.9e-16 87.8 85 55.3
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.9e-16 87.8 85 55.3
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 6.9e-16 87.8 85 55.3
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 6.9e-16 87.8 93 57.0
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 6.9e-16 87.8 61 67.2
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 9.1e-16 87.4 46 78.3
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 9.1e-16 87.4 50 76.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.5e-15 86.7 117 44.4
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.5e-15 86.7 108 47.2
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 2.0e-15 86.3 101 46.5
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.0e-15 86.3 46 78.3
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.6e-15 85.9 94 53.2
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 2.6e-15 85.9 107 46.7
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.6e-15 85.9 52 75.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 2.6e-15 85.9 63 65.1
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 2.6e-15 85.9 63 65.1
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 3.4e-15 85.5 43 81.4
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 3.4e-15 85.5 92 50.0
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 3.4e-15 85.5 60 68.3
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 3.4e-15 85.5 93 50.5
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 3.4e-15 85.5 43 81.4
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 4.5e-15 85.1 52 71.2
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 5.9e-15 84.7 49 75.5
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 7.7e-15 84.3 54 66.7
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.0e-14 84.0 41 85.4
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.0e-14 84.0 63 66.7
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.7e-14 83.2 54 66.7
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.9e-14 82.4 51 70.6
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.0e-14 81.6 101 45.5
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.0e-14 81.6 101 44.6
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 6.5e-14 81.3 47 74.5
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 8.5e-14 80.9 45 75.6
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.9e-13 79.7 40 82.5
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.9e-13 79.7 47 68.1
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 4.2e-13 78.6 55 65.5
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 4.2e-13 78.6 89 47.2
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 5.5e-13 78.2 46 69.6
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.5e-13 78.2 53 67.9
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.2e-12 77.0 45 71.1
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.6e-12 76.6 120 37.5
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.6e-12 76.6 101 42.6
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 2.1e-12 76.3 57 56.1
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.7e-12 75.9 57 54.4
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.7e-12 75.9 67 52.2
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.7e-12 75.9 59 57.6
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 3.6e-12 75.5 47 70.2
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.7e-12 75.1 95 42.1
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.1e-12 74.7 47 68.1
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 6.1e-12 74.7 57 54.4
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 6.1e-12 74.7 47 68.1
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.4e-11 73.6 50 62.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.3e-11 72.8 120 36.7
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.0e-11 72.4 47 63.8
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 3.0e-11 72.4 111 39.6
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.9e-11 72.0 50 62.0
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 5.1e-11 71.6 50 60.0
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.1e-10 70.5 94 39.4
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.5e-10 70.1 48 64.6
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.5e-10 70.1 46 65.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.5e-10 70.1 46 65.2
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.0e-10 69.7 57 52.6
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.0e-10 69.7 48 64.6
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.0e-10 69.7 48 64.6
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.6e-10 69.3 50 58.0
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 2.6e-10 69.3 84 45.2
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.6e-10 69.3 48 64.6
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.6e-10 69.3 57 50.9
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 7.4e-10 67.8 65 47.7
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 9.7e-10 67.4 48 62.5
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 9.7e-10 67.4 98 48.0
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.3e-09 67.0 48 62.5
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.7e-09 66.6 46 60.9
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-09 66.6 57 52.6
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 3.7e-09 65.5 46 58.7
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 3.7e-09 65.5 46 58.7
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 3.7e-09 65.5 46 58.7
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 6.3e-09 64.7 44 61.4
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-08 63.5 48 58.3
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.4e-08 63.5 48 58.3
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 1.4e-08 63.5 36 72.2
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.8e-08 63.2 41 63.4
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.4e-08 62.8 62 46.8
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 3.1e-08 62.4 36 69.4
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 5.3e-08 61.6 62 45.2
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 5.3e-08 61.6 62 45.2
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 5.3e-08 61.6 119 34.5
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 5.3e-08 61.6 62 45.2
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 9.1e-08 60.8 33 78.8
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 9.1e-08 60.8 33 78.8
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 2.0e-07 59.7 31 80.6
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 2.0e-07 59.7 33 75.8
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.4e-07 58.9 40 55.0
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 7.7e-07 57.8 40 55.0
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 7.7e-07 57.8 40 55.0
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.3e-06 57.0 31 74.2
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 2.9e-06 55.8 40 52.5
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 2.9e-06 55.8 40 52.5


User provided reference genes

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