Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 2.7e-36 154.8 79 100.0
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 9.0e-24 113.2 79 77.2
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 3.5e-20 101.3 78 62.8
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 5.1e-19 97.4 65 64.6
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.1e-18 96.3 78 57.7
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.1e-18 96.3 78 66.7
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.5e-18 95.9 78 57.7
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.5e-18 95.9 63 65.1
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.5e-18 95.9 78 59.0
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 3.3e-18 94.7 62 62.9
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 4.3e-18 94.4 63 66.7
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 2.1e-17 92.0 62 62.9
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 2.8e-17 91.7 78 57.7
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.8e-17 91.7 62 66.1
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 4.8e-17 90.9 61 65.6
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 4.8e-17 90.9 64 64.1
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 6.2e-17 90.5 62 62.9
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 8.1e-17 90.1 65 58.5
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.1e-16 89.7 60 61.7
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.1e-16 89.7 62 62.9
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.4e-16 89.4 62 64.5
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.4e-16 88.6 62 64.5
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.1e-16 88.2 58 62.1
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 3.1e-16 88.2 62 62.9
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 5.3e-16 87.4 63 58.7
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 6.9e-16 87.0 69 55.1
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 9.0e-16 86.7 58 67.2
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 1.2e-15 86.3 65 60.0
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.6e-15 85.1 64 57.8
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 2.6e-15 85.1 67 58.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 3.4e-15 84.7 58 62.1
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 3.4e-15 84.7 64 57.8
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 3.4e-15 84.7 58 62.1
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 4.5e-15 84.3 62 59.7
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 5.8e-15 84.0 62 54.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 5.8e-15 84.0 62 59.7
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 7.6e-15 83.6 60 63.3
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 7.6e-15 83.6 62 58.1
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 9.9e-15 83.2 62 56.5
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 9.9e-15 83.2 62 53.2
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 9.9e-15 83.2 62 59.7
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.7e-14 82.4 62 56.5
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 2.2e-14 82.0 64 54.7
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 2.9e-14 81.6 65 58.5
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.8e-14 81.3 61 60.7
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.8e-14 81.3 61 60.7
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 3.8e-14 81.3 61 57.4
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 4.9e-14 80.9 59 61.0
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 8.4e-14 80.1 65 53.8
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 8.4e-14 80.1 65 53.8
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 8.4e-14 80.1 62 53.2
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 8.4e-14 80.1 58 62.1
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.1e-13 79.7 61 54.1
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 1.1e-13 79.7 63 57.1
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.4e-13 79.3 65 52.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.9e-13 79.0 56 57.1
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 3.2e-13 78.2 56 58.9
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 4.2e-13 77.8 62 53.2
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 4.2e-13 77.8 58 53.4
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 4.2e-13 77.8 56 57.1
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 5.4e-13 77.4 74 44.6
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 5.4e-13 77.4 63 57.1
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 5.4e-13 77.4 61 50.8
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 7.1e-13 77.0 56 57.1
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 7.1e-13 77.0 56 57.1
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 9.3e-13 76.6 58 51.7
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 9.3e-13 76.6 61 54.1
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 9.3e-13 76.6 58 55.2
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 9.3e-13 76.6 56 58.9
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.6e-12 75.9 62 50.0
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.6e-12 75.9 59 54.2
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 1.6e-12 75.9 69 49.3
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.1e-12 75.5 78 43.6
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 2.1e-12 75.5 58 53.4
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 6.0e-12 73.9 61 55.7
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 6.0e-12 73.9 62 50.0
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 7.9e-12 73.6 69 44.9
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 7.9e-12 73.6 58 55.2
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 7.9e-12 73.6 60 53.3
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 7.9e-12 73.6 60 53.3
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 3.0e-11 71.6 83 42.2
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 6.7e-11 70.5 63 46.0
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 6.7e-11 70.5 53 62.3
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.9e-10 68.9 64 46.9
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 4.3e-10 67.8 64 45.3
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 5.6e-10 67.4 62 51.6
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.3e-09 66.2 60 41.7
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.6e-09 65.9 62 46.8
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 3.7e-09 64.7 98 35.7
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.1e-08 61.6 58 50.0
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 5.3e-08 60.8 58 48.3
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 4.5e-07 57.8 61 37.7
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 9.9e-07 56.6 62 48.4


User provided reference genes

Program Settings