Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 6.8e-72 273.9 136 100.0
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 3.7e-70 268.1 136 97.1
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 6.4e-70 267.3 136 96.3
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.2e-69 265.0 136 96.3
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 2.1e-68 262.3 136 96.3
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.1e-68 262.3 138 94.9
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 2.1e-68 262.3 138 94.9
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.6e-68 261.2 138 94.2
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.3e-67 259.6 136 91.9
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 94.1
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 93.4
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.1e-66 256.5 137 90.5
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.9e-66 255.8 136 94.9
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.9e-66 255.8 136 93.4
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.5e-66 255.4 136 92.6
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 5.6e-66 254.2 136 92.6
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 7.3e-66 253.8 136 92.6
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 7.3e-66 253.8 136 91.9
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 1.2e-65 253.1 136 91.9
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.2e-65 253.1 136 92.6
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 2.1e-65 252.3 137 92.7
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.8e-65 251.9 136 91.2
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 3.6e-65 251.5 136 91.9
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 3.6e-65 251.5 136 91.9
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 3.6e-65 251.5 136 91.9
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 90.4
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 91.2
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 6.2e-65 250.8 136 91.2
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.2e-65 250.8 136 91.2
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 6.2e-65 250.8 136 91.2
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 90.4
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 88.2
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 91.2
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.1e-64 250.0 136 89.7
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.1e-64 250.0 136 89.7
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.1e-64 250.0 136 89.7
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.4e-64 249.6 136 89.7
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.4e-64 249.6 136 89.7
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.4e-64 249.6 136 89.7
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 89.7
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 3.1e-64 248.4 137 90.5
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 3.1e-64 248.4 136 89.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.0e-64 248.1 159 81.8
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 5.2e-64 247.7 136 89.0
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 5.2e-64 247.7 136 89.0
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 5.2e-64 247.7 136 89.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 6.8e-64 247.3 136 89.0
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 88.2
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 89.0
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.2e-63 246.5 136 86.8
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 88.2
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.0e-63 245.7 136 87.5
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.6e-63 245.4 148 83.8
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 3.4e-63 245.0 172 73.8
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 5.8e-63 244.2 136 86.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 5.8e-63 244.2 136 89.0
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 5.8e-63 244.2 136 89.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 7.6e-63 243.8 149 82.6
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 9.9e-63 243.4 136 87.5
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.3e-62 243.0 136 88.2
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.7e-62 242.7 153 81.7
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 2.9e-62 241.9 136 87.5
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 3.8e-62 241.5 136 88.2
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.1e-61 240.0 136 85.3
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 1.1e-61 240.0 137 86.1
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.1e-58 229.9 136 84.6
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.9e-58 229.2 136 78.7
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.9e-58 229.2 136 79.4
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 2.5e-58 228.8 136 77.9
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.3e-58 228.4 136 84.6
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.3e-58 228.0 136 83.8
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.2e-57 226.5 139 81.3
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 2.8e-57 225.3 169 69.2
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.4e-56 222.2 189 65.1
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.2e-55 219.9 136 81.6
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.0e-51 205.3 124 84.7
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.9e-51 204.9 120 85.8
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 6.2e-49 197.6 110 85.5
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.4e-48 195.7 105 92.4
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 3.1e-48 195.3 106 90.6
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.5e-47 191.4 105 90.5
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.8e-46 188.3 105 86.7
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 6.4e-46 187.6 169 62.1
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.1e-45 186.8 136 75.7
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 4.2e-45 184.9 136 72.8
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 5.4e-45 184.5 136 72.8
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 7.9e-44 180.6 136 69.1
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 2.3e-43 179.1 138 70.3
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 3.9e-43 178.3 136 69.9
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 3.7e-41 171.8 136 66.9
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 3.4e-39 165.2 156 59.6
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 6.0e-36 154.5 80 93.8
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 6.7e-35 151.0 82 91.5
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 8.7e-35 150.6 82 91.5
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.1e-34 150.2 82 91.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.5e-34 149.8 77 94.8
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 2.5e-34 149.1 80 91.2
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 2.5e-34 149.1 77 94.8
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 3.3e-34 148.7 142 47.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 94.8
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 1.3e-33 146.7 77 90.9
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.1e-33 146.0 77 94.8
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 3.7e-33 145.2 77 90.9
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 4.8e-33 144.8 82 87.8
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 8.2e-33 144.1 156 48.7
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 3.1e-32 142.1 81 88.9
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.1e-32 142.1 77 90.9
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 4.0e-32 141.7 77 92.2
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.2e-31 140.2 126 60.3
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.2e-31 140.2 128 49.2
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.5e-31 139.8 133 48.9
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 2.0e-31 139.4 75 92.0
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 2.6e-31 139.0 87 78.2
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 3.4e-31 138.7 77 89.6
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 4.5e-31 138.3 82 81.7
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 4.5e-31 138.3 77 85.7
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 4.5e-31 138.3 77 85.7
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 4.5e-31 138.3 77 85.7
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 4.5e-31 138.3 82 81.7
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 4.5e-31 138.3 77 85.7
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 4.5e-31 138.3 77 88.3
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 88.3
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 7.6e-31 137.5 75 92.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 7.6e-31 137.5 77 88.3
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.0e-30 137.1 77 89.6
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 2.9e-30 135.6 77 85.7
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.9e-30 135.6 77 85.7
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.9e-30 135.6 77 87.0
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-29 133.7 77 84.4
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-29 133.7 77 84.4
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-29 133.7 77 84.4
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.1e-29 133.7 77 84.4
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.1e-29 133.7 77 84.4
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.1e-29 133.7 115 67.0
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.5e-29 132.5 77 83.1
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 3.2e-29 132.1 80 80.0
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.2e-29 131.7 77 83.1
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 3.5e-28 128.6 72 83.3
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 6.7e-27 124.4 61 96.7
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.6e-25 119.8 61 91.8
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 8.2e-25 117.5 56 100.0
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 8.2e-25 117.5 56 100.0
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.8e-24 116.3 56 96.4
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 2.4e-24 115.9 56 96.4
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 3.1e-24 115.5 56 98.2
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 3.1e-24 115.5 56 98.2
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 1.5e-23 113.2 56 96.4
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 4.5e-23 111.7 56 94.6
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 1.7e-22 109.8 113 54.0
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 5.0e-22 108.2 76 63.2
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 2.3e-19 99.4 57 82.5
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 2.3e-19 99.4 50 96.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 3.9e-19 98.6 56 83.9
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 9.7e-18 94.0 59 76.3
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 2.6e-15 85.9 44 90.9
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 6.5e-14 81.3 47 80.9
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 6.7e-11 71.2 126 34.9
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.4e-10 68.6 41 82.9
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.5e-07 58.5 135 25.9
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 2.9e-06 55.8 25 96.0
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 2.9e-06 55.8 29 89.7


User provided reference genes

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