Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 7.9e-86 320.5 168 100.0
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.3e-43 180.3 94 98.9
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.7e-43 179.9 94 97.9
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 3.7e-43 178.7 94 96.8
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 4.1e-42 175.3 94 95.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 9.1e-42 174.1 94 94.7
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.6e-41 172.6 90 98.9
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 2.6e-41 172.6 90 97.8
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 3.5e-41 172.2 90 97.8
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.5e-41 171.8 90 96.7
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.5e-41 171.8 90 96.7
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.5e-41 171.8 90 96.7
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 4.5e-41 171.8 91 95.6
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.9e-41 171.4 90 95.6
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 5.9e-41 171.4 90 96.7
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 7.7e-41 171.0 90 96.7
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 7.7e-41 171.0 90 96.7
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.0e-40 170.6 90 96.7
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.0e-40 170.6 90 95.6
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.0e-40 170.6 90 95.6
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 1.0e-40 170.6 90 95.6
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.3e-40 170.2 90 95.6
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.3e-40 170.2 91 94.5
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.3e-40 170.2 90 94.4
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.7e-40 169.9 90 95.6
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.7e-40 169.9 104 85.6
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.7e-40 169.9 90 95.6
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.7e-40 169.9 90 95.6
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.7e-40 169.9 90 95.6
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.7e-40 169.9 90 95.6
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.7e-40 169.9 90 95.6
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.7e-40 169.9 91 93.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.2e-40 169.5 100 89.0
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 2.2e-40 169.5 90 95.6
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 2.2e-40 169.5 90 97.8
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 2.9e-40 169.1 90 95.6
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 2.9e-40 169.1 90 94.4
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.8e-40 168.7 90 94.4
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 3.8e-40 168.7 90 94.4
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.8e-40 168.7 90 95.6
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 3.8e-40 168.7 90 95.6
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 5.0e-40 168.3 90 94.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 5.0e-40 168.3 90 94.4
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 5.0e-40 168.3 90 94.4
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 5.0e-40 168.3 90 94.4
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 5.0e-40 168.3 90 94.4
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 5.0e-40 168.3 90 94.4
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 6.5e-40 167.9 90 94.4
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 6.5e-40 167.9 90 94.4
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 6.5e-40 167.9 90 94.4
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 6.5e-40 167.9 90 94.4
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 8.5e-40 167.5 90 94.4
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 8.5e-40 167.5 92 93.5
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 8.5e-40 167.5 90 94.4
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 93.3
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 93.3
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 93.3
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 93.3
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 93.3
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 93.3
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 92.2
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 93.3
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.1e-39 167.2 90 94.4
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-39 166.8 90 94.4
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.5e-39 166.8 90 93.3
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.5e-39 166.8 90 92.2
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.5e-39 166.8 90 93.3
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.9e-39 166.4 90 94.4
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.9e-39 166.4 90 92.2
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.9e-39 166.4 90 93.3
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.5e-39 166.0 90 91.1
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 3.2e-39 165.6 90 93.3
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 3.2e-39 165.6 89 94.4
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 5.5e-39 164.9 90 92.2
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 5.5e-39 164.9 90 93.3
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 5.5e-39 164.9 90 93.3
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 5.5e-39 164.9 90 91.1
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 5.5e-39 164.9 90 90.0
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 5.5e-39 164.9 90 92.2
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 7.2e-39 164.5 94 90.4
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.2e-38 163.7 90 93.3
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.2e-38 163.7 90 91.1
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.2e-38 163.7 94 87.2
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.2e-38 163.7 90 93.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.6e-38 163.3 90 90.0
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.6e-38 163.3 122 75.4
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.0e-37 160.6 93 87.1
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.4e-37 160.2 90 90.0
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.8e-37 159.8 97 86.6
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.3e-37 159.5 90 88.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 3.0e-37 159.1 90 90.0
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 3.0e-37 159.1 93 86.0
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 4.0e-37 158.7 91 89.0
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.2e-37 158.3 90 88.9
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.8e-37 157.5 90 90.0
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.8e-37 157.5 90 90.0
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 3.3e-36 155.6 90 86.7
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 5.7e-36 154.8 90 87.8
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 5.7e-36 154.8 84 92.9
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.3e-35 153.7 81 96.3
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.8e-35 152.5 86 89.5
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 4.8e-35 151.8 90 85.6
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.8e-35 151.8 90 85.6
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 4.8e-35 151.8 81 93.8
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 6.3e-35 151.4 80 95.0
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.4e-34 150.2 89 86.5
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-34 149.8 80 95.0
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 7.0e-34 147.9 79 93.7
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 7.0e-34 147.9 90 82.2
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 7.7e-33 144.4 77 97.4
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 2.2e-32 142.9 102 71.6
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 2.2e-32 142.9 102 73.5
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.2e-32 142.9 90 82.2
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 3.8e-32 142.1 78 93.6
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.4e-29 133.7 89 74.2
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 3.1e-26 122.5 81 79.0
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.3e-24 117.1 64 90.6
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.5e-23 111.7 58 96.6
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.5e-23 111.7 58 96.6
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 3.6e-22 109.0 58 93.1
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.5e-20 101.3 91 56.0
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 7.5e-20 101.3 80 70.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 2.2e-19 99.8 51 98.0
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.4e-18 97.1 82 65.9
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.8e-18 96.7 51 92.2
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-16 90.9 80 65.0
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.3e-16 90.5 56 78.6
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 5.0e-16 88.6 51 82.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.6e-12 76.3 46 82.6
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.7e-11 72.4 63 65.1
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-10 70.5 42 81.0
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 9.2e-10 67.8 104 38.5
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.0e-08 64.3 104 42.3
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 1.3e-08 63.9 104 43.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.3e-08 63.9 32 96.9
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 3.0e-08 62.8 104 35.6
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 1.5e-07 60.5 104 35.6
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 9.5e-07 57.8 42 69.0
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.2e-06 57.4 86 37.2
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.7e-06 55.5 105 33.3
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 8.0e-06 54.7 106 35.8


User provided reference genes

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