Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 3.5e-129 464.9 230 100.0
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 9.2e-29 131.3 180 45.6
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.3e-27 127.5 171 46.8
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.0e-27 126.3 183 45.9
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 8.7e-27 124.8 185 44.3
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 8.7e-27 124.8 200 41.5
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 1.9e-26 123.6 199 42.7
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 2.5e-26 123.2 175 45.1
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 5.6e-26 122.1 196 46.9
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 1.3e-25 120.9 148 46.6
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 6.2e-25 118.6 148 45.9
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 8.1e-25 118.2 184 43.5
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.4e-24 117.5 148 46.6
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 1.4e-24 117.5 199 43.7
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.4e-24 117.5 194 43.3
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 1.4e-24 117.5 211 41.7
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 6.9e-24 115.2 167 44.3
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.5e-23 114.0 168 45.2
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 1.5e-23 114.0 148 49.3
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 7.6e-23 111.7 148 45.9
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 7.6e-23 111.7 189 42.3
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 7.6e-23 111.7 197 39.6
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 1.3e-22 110.9 189 40.2
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 2.9e-22 109.8 143 48.3
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 3.8e-22 109.4 171 42.1
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 3.8e-22 109.4 142 45.8
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 4.9e-22 109.0 145 47.6
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 4.9e-22 109.0 153 45.1
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 8.4e-22 108.2 196 42.3
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 8.4e-22 108.2 163 46.0
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 4.2e-21 105.9 184 41.3
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 4.2e-21 105.9 191 41.9
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 5.4e-21 105.5 190 38.9
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 5.4e-21 105.5 187 42.8
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 5.4e-21 105.5 164 39.0
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 1.6e-20 104.0 144 47.9
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 2.1e-20 103.6 144 46.5
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 3.5e-20 102.8 180 44.4
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.6e-20 102.4 150 46.7
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 6.0e-20 102.1 193 43.0
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 1.0e-19 101.3 168 42.9
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.0e-19 101.3 151 47.7
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 1.7e-19 100.5 75 66.7
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.7e-19 100.5 194 42.8
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 2.3e-19 100.1 144 45.8
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 3.0e-19 99.8 183 41.0
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 3.0e-19 99.8 175 37.7
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 3.0e-19 99.8 175 37.7
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 3.9e-19 99.4 133 49.6
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 6.6e-19 98.6 75 65.3
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 6.6e-19 98.6 198 35.9
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 8.7e-19 98.2 75 69.3
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 1.1e-18 97.8 158 41.8
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 3.3e-18 96.3 79 68.4
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 3.3e-18 96.3 189 36.0
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 4.3e-18 95.9 147 45.6
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 4.3e-18 95.9 147 45.6
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 4.3e-18 95.9 147 45.6
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 5.6e-18 95.5 152 42.8
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 9.6e-18 94.7 192 41.7
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 2.8e-17 93.2 75 62.7
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 3.6e-17 92.8 73 65.8
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 3.6e-17 92.8 133 43.6
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 3.6e-17 92.8 133 43.6
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 4.8e-17 92.4 75 64.0
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 4.8e-17 92.4 137 46.0
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 8.1e-17 91.7 137 46.0
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 8.1e-17 91.7 71 62.0
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.4e-16 90.9 76 64.5
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.8e-16 90.5 113 48.7
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.8e-16 90.5 167 41.9
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 2.4e-16 90.1 136 42.6
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 3.1e-16 89.7 164 42.7
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 3.1e-16 89.7 70 68.6
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 4.0e-16 89.4 139 44.6
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 4.0e-16 89.4 75 62.7
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 4.0e-16 89.4 189 38.1
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 5.3e-16 89.0 139 44.6
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 5.3e-16 89.0 139 44.6
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 5.3e-16 89.0 139 44.6
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 9.0e-16 88.2 74 63.5
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 9.0e-16 88.2 164 38.4
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 9.0e-16 88.2 192 40.6
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.2e-15 87.8 177 39.5
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 1.2e-15 87.8 186 38.2
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 2.6e-15 86.7 189 37.0
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 3.4e-15 86.3 130 45.4
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 4.5e-15 85.9 182 37.4
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 9.9e-15 84.7 75 57.3
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 6.4e-14 82.0 76 55.3
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 8.4e-14 81.6 89 55.1
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 8.4e-14 81.6 76 56.6
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.1e-13 81.3 182 35.2
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.1e-13 81.3 182 35.2
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 1.4e-13 80.9 141 43.3
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.9e-13 80.5 158 39.9
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 2.4e-13 80.1 79 59.5
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 4.2e-13 79.3 118 46.6
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 7.1e-13 78.6 79 55.7
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 9.3e-13 78.2 214 32.7
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 1.2e-12 77.8 163 39.3
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.6e-12 77.4 71 63.4
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 2.7e-12 76.6 75 57.3
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.5e-12 76.3 165 38.8
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 3.5e-12 76.3 165 38.8
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.8e-11 73.9 165 38.2
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 3.0e-11 73.2 91 50.5
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 5.1e-11 72.4 109 45.0
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 3.3e-10 69.7 61 63.9
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 5.6e-10 68.9 159 37.7
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 7.4e-10 68.6 147 38.1
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 7.4e-10 68.6 147 38.1
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 2.8e-09 66.6 75 52.0
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 3.7e-09 66.2 78 55.1
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 4.8e-09 65.9 180 33.9
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 6.2e-09 65.5 48 68.8
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 2.6e-07 60.1 47 66.0
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 3.4e-07 59.7 178 31.5
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 2.2e-06 57.0 74 43.2
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 2.2e-06 57.0 74 43.2
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 4.9e-06 55.8 87 43.7


User provided reference genes

Program Settings