Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 7.7e-155 550.4 277 100.0
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 1.8e-58 230.3 304 47.7
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 1.2e-54 217.6 302 44.7
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 3.4e-54 216.1 287 47.7
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 8.8e-50 201.4 315 45.1
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 2.0e-46 190.3 286 43.4
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 2.6e-46 189.9 291 43.3
SGA_v2.0_scaffold130G34346 Striga asiatica HOM05D010484 ORTHO05D001329 9.4e-44 181.4 314 40.4
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 1.1e-41 174.5 334 40.7
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 1.5e-36 157.5 318 39.3
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 4.2e-36 156.0 294 38.4
MSTRG.15244 Avicennia marina HOM05D010484 ORTHO05D010242 5.5e-36 155.6 290 41.0
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 5.5e-36 155.6 270 41.1
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 4.7e-35 152.5 320 35.0
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 6.1e-35 152.1 318 38.7
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 2.2e-32 143.7 276 38.8
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 6.3e-32 142.1 295 35.9
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 7.0e-31 138.7 251 38.6
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 3.5e-30 136.3 326 33.7
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 1.5e-28 131.0 324 34.9
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 7.2e-28 128.6 329 33.4
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 2.1e-27 127.1 345 33.3
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 2.7e-27 126.7 348 31.9
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 8.0e-27 125.2 338 32.2
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 2.0e-25 120.6 295 32.9
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 5.7e-25 119.0 318 33.3
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 7.5e-25 118.6 327 31.2
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 7.5e-25 118.6 179 42.5
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 1.3e-24 117.9 340 31.8
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 2.2e-24 117.1 318 32.1
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 2.2e-24 117.1 319 32.6
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 3.7e-24 116.3 315 31.7
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 4.8e-24 115.9 325 30.8
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 1.1e-23 114.8 323 31.6
Solyc07g062740.4 Solanum lycopersicum HOM05D010484 ORTHO05D010242 1.4e-23 114.4 129 51.9
Sopen07g030970 Solanum pennellii HOM05D010484 ORTHO05D010242 1.4e-23 114.4 129 51.9
PGSC0003DMG400012438 Solanum tuberosum HOM05D010484 ORTHO05D010242 1.4e-23 114.4 164 47.6
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 2.4e-23 113.6 308 32.8
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 3.1e-23 113.2 296 33.8
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 3.1e-23 113.2 317 31.5
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 7.0e-23 112.1 317 31.5
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 9.1e-23 111.7 314 30.6
Oeu025352.2 Olea europaea HOM05D001501 ORTHO05D001329 9.1e-23 111.7 205 41.0
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 1.2e-22 111.3 325 32.3
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 1.6e-22 110.9 306 32.0
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 3.5e-22 109.8 335 30.4
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 3.5e-22 109.8 306 32.7
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 5.9e-22 109.0 307 32.6
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 1.7e-21 107.5 313 31.0
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 2.2e-21 107.1 318 30.5
Actinidia18779 Actinidia chinensis HOM05D010484 ORTHO05D001329 5.0e-21 105.9 288 35.1
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 5.0e-21 105.9 302 32.1
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 8.5e-21 105.1 325 32.0
SalBow8G4768 Salvia bowleyana HOM05D010484 ORTHO05D010242 2.5e-20 103.6 269 36.4
SGA_v2.0_scaffold34G13793 Striga asiatica HOM05D010484 ORTHO05D010242 1.2e-19 101.3 227 38.3
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 2.1e-19 100.5 314 31.8
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 4.7e-19 99.4 186 37.1
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 1.4e-18 97.8 293 30.4
HanXRQChr10g0302501 Helianthus annuus HOM05D016023 ORTHO05D010242 1.8e-18 97.4 324 29.6
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 1.8e-18 97.4 315 29.2
PGR031G3944 Punica granatum HOM05D001501 ORTHO05D001329 3.0e-18 96.7 344 30.8
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 5.2e-18 95.9 336 27.7
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 1.2e-17 94.7 340 28.5
Lsat_1_v5_gn_5_127461 Lactuca sativa HOM05D016023 ORTHO05D010242 1.2e-17 94.7 273 33.3
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 1.2e-17 94.7 217 32.7
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 1.2e-17 94.7 312 31.1
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 1.5e-17 94.4 324 29.6
EL10Ac4g08261 Beta vulgaris HOM05D001501 ORTHO05D001329 2.0e-17 94.0 341 29.6
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 7.5e-17 92.0 305 31.1
HanXRQChr13g0391171 Helianthus annuus HOM05D016023 ORTHO05D010242 2.2e-16 90.5 208 36.1
Lsat_1_v5_gn_9_98300 Lactuca sativa HOM05D016023 ORTHO05D010242 4.9e-16 89.4 211 35.1
unitig_747.g21580 Utricularia gibba HOM05D010484 ORTHO05D010242 4.9e-16 89.4 275 35.3
arahy.Tifrunner.gnm1.ann1.14Q3ET Arachis hypogaea HOM05D001501 ORTHO05D001329 1.1e-15 88.2 342 28.4
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 1.1e-15 88.2 344 27.0
Aqoxy1G02259 Aquilegia oxysepala HOM05D001501 ORTHO05D001329 1.8e-15 87.4 342 27.5
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 4.1e-15 86.3 353 32.6
ECA234G3280 Erigeron canadensis HOM05D016023 ORTHO05D010242 4.1e-15 86.3 342 29.2
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 1.2e-14 84.7 318 28.3
DCAR_017119 Daucus carota HOM05D010484 ORTHO05D010242 1.2e-14 84.7 272 32.7
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 1.6e-14 84.3 295 31.5
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 3.5e-14 83.2 326 29.8
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 4.5e-14 82.8 338 28.7
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 4.5e-14 82.8 339 29.5
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 4.5e-14 82.8 339 29.5
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 7.7e-14 82.0 339 29.2
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 7.7e-14 82.0 330 30.3
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 7.7e-14 82.0 321 29.3
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 1.7e-13 80.9 201 32.8
PSO675G3629 Papaver somniferum HOM05D001501 ORTHO05D001329 1.7e-13 80.9 206 31.1
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 2.9e-13 80.1 292 29.1
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 5.0e-13 79.3 220 30.9
MBI06_g00806_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 5.0e-13 79.3 304 25.7
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 8.6e-13 78.6 323 28.5
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 8.6e-13 78.6 322 28.9
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 1.1e-12 78.2 318 28.6
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 1.1e-12 78.2 266 30.8
PSO541G6205 Papaver somniferum HOM05D001501 ORTHO05D001329 1.1e-12 78.2 206 30.6
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 2.5e-12 77.0 328 30.5
HanXRQChr10g0317081 Helianthus annuus HOM05D016023 ORTHO05D010242 3.3e-12 76.6 169 37.9
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 7.3e-12 75.5 321 29.6
HanXRQChr10g0317071 Helianthus annuus HOM05D016023 ORTHO05D010242 7.3e-12 75.5 158 37.3
Sc16g0007300 Simmondsia chinensis HOM05D001501 ORTHO05D001329 9.5e-12 75.1 284 29.2
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 1.2e-11 74.7 350 31.4
ECA240G0649 Erigeron canadensis HOM05D016023 ORTHO05D010242 4.7e-11 72.8 189 31.7
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 1.8e-10 70.9 180 36.1
AUR62019490 Chenopodium quinoa HOM05D001501 ORTHO05D001329 2.3e-10 70.5 232 30.2
AUR62036146 Chenopodium quinoa HOM05D001501 ORTHO05D001329 5.2e-10 69.3 236 30.5
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 5.2e-10 69.3 192 34.4
Sed0026243 Sechium edule HOM05D001501 ORTHO05D001329 5.2e-10 69.3 90 43.3
Sed0013458 Sechium edule HOM05D001501 ORTHO05D001329 1.2e-09 68.2 200 30.0
MBI07_g38899_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 3.4e-09 66.6 132 34.1
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.3e-08 64.7 349 27.2
MBI07_g01326_MAGBIO Magnolia biondii HOM05D001501 ORTHO05D001329 1.3e-08 64.7 188 29.8
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 2.2e-08 63.9 195 30.8
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 1.1e-07 61.6 348 27.6
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 1.1e-07 61.6 311 25.7
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 2.4e-07 60.5 196 31.1
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 2.4e-07 60.5 196 31.1
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 2.4e-07 60.5 335 28.7
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 4.1e-07 59.7 215 30.7
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 7.0e-07 58.9 349 26.1
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 9.2e-07 58.5 196 30.6
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 1.6e-06 57.8 177 31.1
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 2.0e-06 57.4 265 25.7
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 3.5e-06 56.6 177 30.5
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 3.5e-06 56.6 195 29.2
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 7.8e-06 55.5 196 29.6


User provided reference genes

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