Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu050988.1 Olea europaea HOM05D004909 ORTHO05D009625 0.0e+00 1462.6 731 100.0
Oeu050987.1 Olea europaea HOM05D004909 ORTHO05D009625 0.0e+00 1283.9 798 84.0
SEGI_22240 Sequoiadendron giganteum HOM05D004909 ORTHO05D009316 3.6e-103 380.2 944 31.8
RcHm_v2.0_Chr6g0256711 Rosa chinensis HOM05D004909 ORTHO05D009625 7.3e-96 355.9 347 55.9
Sed0007601 Sechium edule HOM05D004909 ORTHO05D009316 6.9e-94 349.4 401 52.6
Actinidia34900 Actinidia chinensis HOM05D004909 ORTHO05D009316 1.9e-80 304.7 949 28.8
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 2.5e-80 304.3 344 49.7
PGR044G1103 Punica granatum HOM05D004909 ORTHO05D009625 3.3e-80 303.9 362 47.8
Aqoxy2G02242 Aquilegia oxysepala HOM05D004909 ORTHO05D009625 9.6e-80 302.4 363 46.8
PGR004G1782 Punica granatum HOM05D004909 ORTHO05D009625 1.6e-79 301.6 362 47.5
DCAR_032461 Daucus carota HOM05D004909 ORTHO05D009625 3.0e-65 254.2 346 43.4
Aqoxy3G01129 Aquilegia oxysepala HOM05D004909 ORTHO05D009625 3.3e-64 250.8 363 41.9
CAN.G1001.42 Capsicum annuum HOM05D004909 ORTHO05D009625 3.3e-56 224.2 240 49.2
EL10Ac1g02203 Beta vulgaris HOM05D004909 ORTHO05D009625 2.2e-55 221.5 351 40.5
Sc13g0007740 Simmondsia chinensis HOM05D004909 ORTHO05D009316 2.6e-53 214.5 533 31.7
TWI14G0838 Tripterygium wilfordii HOM05D004909 ORTHO05D009316 7.9e-50 203.0 349 39.3
SHI38062 Sapria himalayana HOM05D004909 ORTHO05D009625 1.5e-48 198.7 278 45.0
EL10Ac7g16727 Beta vulgaris HOM05D004909 ORTHO05D009625 8.2e-47 193.0 340 37.6
Sc11g0004480 Simmondsia chinensis HOM05D004909 ORTHO05D009625 7.0e-46 189.9 226 46.9
Hma1.2p1_0295F.1_g116730 Hydrangea macrophylla HOM05D004909 ORTHO05D009625 9.1e-46 189.5 231 44.2
Cc00_g11440 Coffea canephora HOM05D004909 ORTHO05D009625 2.2e-44 184.9 230 45.2
SHI49389 Sapria himalayana HOM05D004909 ORTHO05D009625 3.6e-42 177.6 245 44.5
AUR62026823 Chenopodium quinoa HOM05D004909 ORTHO05D009316 4.4e-40 170.6 233 40.8
VMungo1067G0003 Vigna mungo HOM05D004909 ORTHO05D009625 8.2e-39 166.4 351 33.6
SHI49457 Sapria himalayana HOM05D004909 ORTHO05D009625 1.1e-38 166.0 211 47.9
AUR62042355 Chenopodium quinoa HOM05D004909 ORTHO05D009316 2.7e-37 161.4 273 35.9
AUR62043789 Chenopodium quinoa HOM05D004909 ORTHO05D009316 2.7e-37 161.4 273 35.9
AUR62043900 Chenopodium quinoa HOM05D004909 ORTHO05D009316 2.7e-37 161.4 273 35.9
Glyma.15G187700 Glycine max HOM05D004909 ORTHO05D009316 1.7e-36 158.7 392 32.1
SHI35986 Sapria himalayana HOM05D004909 ORTHO05D009625 1.7e-36 158.7 224 44.6
AUR62044036 Chenopodium quinoa HOM05D004909 ORTHO05D009625 6.5e-36 156.8 267 37.1
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 2.5e-35 154.8 345 33.6
EL10Ac7g16726 Beta vulgaris HOM05D004909 ORTHO05D009316 5.5e-35 153.7 397 29.0
SHI40430 Sapria himalayana HOM05D004909 ORTHO05D009625 8.0e-34 149.8 231 42.0
CsaV3_UNG207890 Cucumis sativus L. HOM05D004909 ORTHO05D009625 1.0e-33 149.4 169 48.5
RcHm_v2.0_MTg0498751 Rosa chinensis HOM05D004909 ORTHO05D009625 1.4e-33 149.1 247 36.4
SHI35584 Sapria himalayana HOM05D004909 ORTHO05D009316 2.0e-32 145.2 204 44.6
SHI41761 Sapria himalayana HOM05D004909 ORTHO05D009625 4.4e-32 144.1 169 49.1
AUR62042351 Chenopodium quinoa HOM05D004909 ORTHO05D009316 1.3e-31 142.5 309 35.0
THA.LOC109116692 Tarenaya hassleriana HOM05D004909 ORTHO05D009316 4.8e-31 140.6 202 42.1
SHI46715 Sapria himalayana HOM05D004909 ORTHO05D009625 3.1e-30 137.9 230 40.4
Aqoxy2G02244 Aquilegia oxysepala HOM05D004909 ORTHO05D009316 3.5e-29 134.4 299 33.8
Aqoxy3G01127 Aquilegia oxysepala HOM05D004909 ORTHO05D009316 3.5e-29 134.4 299 33.8
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 7.2e-27 126.7 207 36.7
SHI43987 Sapria himalayana HOM05D004909 ORTHO05D009625 8.9e-25 119.8 133 52.6
Oeu022816.1 Olea europaea HOM05D004909 ORTHO05D009316 2.6e-24 118.2 66 81.8
Lalb_Chr00c21g0405621 Lupinus albus HOM05D004909 ORTHO05D009316 1.7e-23 115.5 111 50.5
Sed0005050 Sechium edule HOM05D004909 ORTHO05D009316 1.8e-22 112.1 348 28.4
CAN.G335.18 Capsicum annuum HOM05D004909 ORTHO05D009625 4.1e-22 110.9 137 42.3
EL10Ac1g02201 Beta vulgaris HOM05D004909 ORTHO05D009316 3.5e-21 107.8 232 34.5
SHI35576 Sapria himalayana HOM05D004909 ORTHO05D009625 1.7e-20 105.5 100 56.0
Nitab4.5_0010033g0040 Nicotiana tabacum HOM05D004909 ORTHO05D009316 3.8e-20 104.4 212 34.4
Sed0025836 Sechium edule HOM05D004909 ORTHO05D009316 7.3e-19 100.1 68 69.1
AUR62010529 Chenopodium quinoa HOM05D004909 ORTHO05D005619 2.8e-18 98.2 248 35.1
HPP92_026900 Vanilla planifolia HOM05D004909 ORTHO05D009316 2.8e-18 98.2 155 41.9
DCAR_032462 Daucus carota HOM05D004909 ORTHO05D009316 1.4e-17 95.9 168 35.7
Solyc05g045720.1 Solanum lycopersicum HOM05D004909 ORTHO05D009625 2.3e-17 95.1 343 25.1
arahy.Tifrunner.gnm1.ann1.HS2KB4 Arachis hypogaea HOM05D004909 ORTHO05D009316 8.9e-17 93.2 92 54.3
Potri.007G061821 Populus trichocarpa HOM05D004909 ORTHO05D009316 1.2e-16 92.8 164 40.2
CAN.G505.9 Capsicum annuum HOM05D004909 ORTHO05D009316 3.4e-16 91.3 99 46.5
Nitab4.5_0005140g0040 Nicotiana tabacum HOM05D004909 ORTHO05D009625 7.5e-16 90.1 239 30.1
Solyc05g045890.1 Solanum lycopersicum HOM05D004909 ORTHO05D009625 9.8e-16 89.7 205 31.2
Nitab4.5_0000081g0150 Nicotiana tabacum HOM05D004909 ORTHO05D009625 2.2e-15 88.6 213 31.0
Nitab4.5_0001526g0140 Nicotiana tabacum HOM05D004909 ORTHO05D009316 3.7e-15 87.8 159 37.1
Duzib116G0563 Durio zibethinus HOM05D004909 ORTHO05D009625 1.1e-14 86.3 140 37.1
Nitab4.5_0000014g0460 Nicotiana tabacum HOM05D004909 ORTHO05D009625 1.8e-14 85.5 124 38.7
CsaV3_UNG207880 Cucumis sativus L. HOM05D004909 ORTHO05D009625 4.1e-14 84.3 105 42.9
Peaxi162Scf00651g00626 Petunia axillaris HOM05D004909 ORTHO05D009316 3.5e-13 81.3 389 24.4
SHI39947 Sapria himalayana HOM05D004909 ORTHO05D009625 4.6e-13 80.9 87 48.3
EL10Ac1g01432 Beta vulgaris HOM05D004909 ORTHO05D009316 1.7e-12 79.0 138 38.4
Sopen05g027060 Solanum pennellii HOM05D000213 ORTHO05D011567 5.0e-12 77.4 119 35.3
Sopen05g027030 Solanum pennellii HOM05D000213 ORTHO05D011567 1.5e-11 75.9 107 37.4
vmacro17405 Vaccinium macrocarpon HOM05D004909 ORTHO05D009316 1.9e-11 75.5 127 40.9
Lj2A1227T106 Lonicera japonica HOM05D004909 ORTHO05D009316 9.5e-11 73.2 129 41.1
arahy.Tifrunner.gnm1.ann1.0IJH8U Arachis hypogaea HOM05D012997 ORTHO05D014434 1.2e-10 72.8 64 57.8
PSO063G2824 Papaver somniferum HOM05D004909 ORTHO05D009625 1.6e-10 72.4 101 41.6
PGR044G0991 Punica granatum HOM05D004909 ORTHO05D009316 1.1e-09 69.7 65 50.8
Cc00_g01790 Coffea canephora HOM05D004909 ORTHO05D009316 1.4e-09 69.3 55 50.9
SHI29964 Sapria himalayana HOM05D004909 ORTHO05D009625 5.2e-09 67.4 95 42.1
Nitab4.5_0002276g0060 Nicotiana tabacum HOM05D004909 ORTHO05D009316 1.5e-08 65.9 46 71.7
Nitab4.5_0001681g0080 Nicotiana tabacum HOM05D004909 ORTHO05D009316 2.0e-08 65.5 63 49.2
SGA_v2.0_scaffold119G32792 Striga asiatica HOM05D004909 ORTHO05D009625 2.6e-08 65.1 62 51.6
SGA_v2.0_scaffold255G45542 Striga asiatica HOM05D004909 ORTHO05D009625 5.8e-08 63.9 93 40.9
Sc02g0004080 Simmondsia chinensis HOM05D004909 ORTHO05D009316 7.5e-08 63.5 170 33.5
CAN.G505.15 Capsicum annuum HOM05D004909 ORTHO05D009316 9.8e-08 63.2 63 47.6
Hma1.2p1_0003F.1_g003590 Hydrangea macrophylla HOM05D004909 ORTHO05D009316 2.2e-07 62.0 114 36.8
SHI51920 Sapria himalayana HOM05D009967 ORTHO05D009625 2.2e-07 62.0 69 49.3
CAN.G1858.5 Capsicum annuum HOM05D004909 ORTHO05D009316 4.9e-07 60.8 215 26.5
Lalb_Chr11g0070061 Lupinus albus HOM05D004909 ORTHO05D009316 1.9e-06 58.9 58 46.6
Nitab4.5_0000580g0100 Nicotiana tabacum HOM05D004909 ORTHO05D009316 3.2e-06 58.2 111 36.9


User provided reference genes

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