Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 1.5e-176 622.9 338 100.0
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.6e-120 436.0 307 77.5
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 1.8e-118 429.9 308 72.4
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 7.0e-118 427.9 307 77.2
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.7e-117 426.0 322 75.5
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 2.7e-117 426.0 306 77.5
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 7.8e-117 424.5 306 77.1
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.0e-116 422.5 307 76.5
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 8.6e-116 421.0 307 77.2
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 2.5e-115 419.5 307 75.9
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 5.6e-115 418.3 306 67.0
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.0e-113 414.1 309 76.1
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 1.0e-113 414.1 306 73.5
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.4e-113 413.7 307 74.3
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 3.1e-113 412.5 307 74.9
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 2.6e-112 409.5 308 76.0
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 3.4e-112 409.1 307 75.2
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 5.8e-112 408.3 307 74.6
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 7.5e-112 407.9 308 75.3
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 9.8e-112 407.5 306 74.5
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 1.3e-111 407.1 306 66.0
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 4.9e-111 405.2 306 74.8
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 4.9e-111 405.2 301 66.4
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 4.9e-111 405.2 307 65.1
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 8.3e-111 404.4 313 74.1
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 3.2e-110 402.5 307 73.6
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 5.4e-110 401.7 306 68.3
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 9.2e-110 401.0 307 73.6
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.6e-109 400.2 308 66.2
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 2.0e-109 399.8 313 65.2
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.7e-109 399.4 308 66.2
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.0e-108 397.5 307 73.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.0e-108 397.5 306 67.3
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 2.3e-108 396.4 306 72.9
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 3.9e-108 395.6 308 65.9
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 5.0e-108 395.2 309 72.2
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 5.0e-108 395.2 308 67.9
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 6.6e-108 394.8 306 72.2
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 8.6e-108 394.4 308 67.9
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.1e-107 394.0 282 79.1
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 3.3e-107 392.5 308 67.2
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 3.3e-107 392.5 308 67.5
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 5.6e-107 391.7 313 64.5
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.2e-106 390.6 307 66.1
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 2.1e-106 389.8 306 71.9
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 3.6e-106 389.0 307 72.6
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 3.6e-106 389.0 313 72.8
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 6.2e-106 388.3 308 66.6
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 6.2e-106 388.3 307 72.6
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 8.1e-106 387.9 307 65.8
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 1.1e-105 387.5 307 72.6
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 2.3e-105 386.3 308 68.5
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 5.2e-105 385.2 308 71.8
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 6.8e-105 384.8 311 70.4
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 8.9e-105 384.4 306 72.9
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.0e-104 383.3 339 60.8
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 7.5e-104 381.3 307 70.0
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 9.8e-104 380.9 307 65.1
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 4.9e-103 378.6 307 71.7
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.4e-103 378.3 307 70.7
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 8.3e-103 377.9 306 68.3
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 8.3e-103 377.9 310 71.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.1e-102 377.5 307 71.3
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.9e-102 376.7 307 64.5
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.9e-102 376.7 314 68.5
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 1.9e-102 376.7 310 69.0
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 7.1e-102 374.8 309 62.8
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 3.5e-101 372.5 309 64.4
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 7.8e-101 371.3 318 67.3
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.0e-100 370.9 307 70.0
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 6.6e-100 368.2 309 70.2
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.1e-99 367.5 312 71.2
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 1.5e-99 367.1 322 68.3
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.3e-99 365.9 310 68.7
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 5.6e-99 365.2 321 67.0
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.1e-98 363.2 308 59.7
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.8e-97 360.1 306 59.5
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 6.8e-97 358.2 308 64.0
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-96 357.1 340 64.7
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 3.8e-95 352.4 355 58.9
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 3.8e-95 352.4 355 58.9
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 1.9e-94 350.1 281 73.7
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 7.1e-94 348.2 307 68.4
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 7.1e-94 348.2 312 69.9
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 7.1e-94 348.2 339 55.8
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 9.2e-94 347.8 284 74.6
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.3e-92 344.0 306 59.2
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-91 340.9 308 59.4
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.4e-89 334.0 320 62.5
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.8e-89 333.6 322 62.1
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 5.2e-89 332.0 308 55.8
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 4.4e-88 328.9 349 58.7
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 4.4e-88 328.9 349 58.7
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 5.8e-88 328.6 264 74.2
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 7.6e-88 328.2 282 68.8
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.7e-87 327.0 285 69.5
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 3.8e-87 325.9 263 70.3
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 4.9e-87 325.5 281 59.4
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 6.4e-87 325.1 324 61.1
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.1e-86 324.3 309 57.0
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 5.4e-86 322.0 307 63.8
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 7.1e-86 321.6 263 65.0
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 2.7e-85 319.7 272 67.3
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.0e-84 317.8 258 74.0
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 3.0e-84 316.2 307 64.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 3.9e-84 315.8 258 73.6
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 4.3e-83 312.4 213 81.7
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 9.9e-80 301.2 243 75.3
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.9e-79 299.7 273 58.6
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 2.3e-76 290.0 213 76.5
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 2.8e-74 283.1 234 63.7
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 4.8e-74 282.3 297 52.5
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.3e-71 274.2 249 61.4
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 2.9e-71 273.1 236 61.9
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.1e-70 271.2 234 62.0
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 1.2e-69 267.7 295 53.2
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.9e-67 260.4 246 68.3
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 5.6e-67 258.8 233 69.5
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 2.4e-65 253.4 239 67.8
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 2.6e-64 250.0 189 77.8
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.4e-64 249.6 233 66.5
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.0e-63 248.1 214 70.6
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.3e-63 247.7 233 66.5
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 2.7e-61 240.0 143 79.7
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 3.5e-61 239.6 233 66.5
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 3.1e-57 226.5 300 46.0
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 5.9e-56 222.2 239 60.3
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.0e-55 221.5 243 53.1
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 3.8e-55 219.5 235 64.3
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.9e-54 217.2 235 53.2
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.9e-54 217.2 235 53.2
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.2e-48 198.0 246 59.8
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.6e-45 186.0 146 77.4
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 6.1e-45 185.7 328 43.3
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 3.9e-44 183.0 186 61.8
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 4.4e-43 179.5 282 41.8
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-42 177.9 172 56.4
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 8.2e-42 175.3 243 51.4
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 4.5e-40 169.5 161 57.8
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 2.9e-39 166.8 149 74.5
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 4.2e-38 162.9 321 35.2
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 9.4e-38 161.8 245 45.3
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.1e-33 146.7 74 85.1
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 8.0e-29 132.1 169 47.9
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.0e-28 129.8 156 62.2
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 1.5e-27 127.9 73 72.6
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 4.4e-27 126.3 73 76.7
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.8e-20 104.4 87 62.1
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.8e-20 104.4 59 71.2
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 4.0e-20 103.2 152 39.5
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 8.3e-18 95.5 132 33.3
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 1.7e-15 87.8 50 68.0
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.9e-14 84.3 132 39.4
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 4.7e-13 79.7 84 54.8
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 3.7e-10 70.1 89 47.2
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 3.5e-08 63.5 100 40.0
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 5.6e-06 56.2 42 66.7
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 5.6e-06 56.2 42 66.7


User provided reference genes

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